BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898300
Length=294
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53650.1 | Symbols: | Histone superfamily protein | chr3:19... 477 2e-134
AT5G22880.1 | Symbols: H2B, HTB2 | histone B2 | chr5:7651957-76... 322 1e-87
AT3G09480.1 | Symbols: | Histone superfamily protein | chr3:29... 296 7e-80
AT5G02570.1 | Symbols: | Histone superfamily protein | chr5:57... 283 6e-76
AT3G45980.1 | Symbols: H2B, HTB9 | Histone superfamily protein ... 252 2e-66
AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein | ch... 252 2e-66
> AT3G53650.1 | Symbols: | Histone superfamily protein | chr3:19889358-19889774
FORWARD LENGTH=417
Length=417
Score = 477 bits (258), Expect = 2e-134
Identities = 276/285 (97%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 3 GAAGAAATCGAAGAAGAACATCGAGACGTACAAGATCTACATCTTCAAGGTTTTGAAGCA 62
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 123 GAAGAAATCGAAGAAGAACATCGAGACGTACAAGATCTACATCTTCAAGGTTCTGAAACA 182
Query 63 AGTTCATCCAGATATCGGAATCTCTGGGAAAGCGATGGGAATCATGAACAGTTTCATCAA 122
||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 183 AGTTCATCCTGATATCGGAATCTCCGGGAAAGCGATGGGGATCATGAACAGTTTCATCAA 242
Query 123 CGACATCTTCGAGAAACTCGCTCAGGAATCATCGCGATTGGCTAGGTACAACAAGAAGCC 182
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 243 CGACATCTTCGAGAAACTAGCTCAGGAATCATCGCGATTGGCTAGGTACAACAAGAAACC 302
Query 183 GACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTGTTGCCTGGAGAACTCTC 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 303 GACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTGTTGCCTGGAGAGCTCTC 362
Query 243 GAAACACGCTGTTTCTGAAGGCACTAAGGCGGTTACAAAATTCAC 287
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 363 GAAACACGCTGTTTCTGAAGGCACTAAGGCGGTTACTAAATTCAC 407
> AT5G22880.1 | Symbols: H2B, HTB2 | histone B2 | chr5:7651957-7652622
REVERSE LENGTH=666
Length=666
Score = 322 bits (174), Expect = 1e-87
Identities = 244/278 (88%), Gaps = 4/278 (1%)
Strand=Plus/Plus
Query 3 GAAGAAATCGAAGAAGAACATCGAGACGTACAAGATCTACATCTTCAAGGTTTTGAAGCA 62
||||| ||| ||||||||| | ||||| ||||||||||||||||||||||| ||||||||
Sbjct 199 GAAGAGATCAAAGAAGAACGTTGAGACATACAAGATCTACATCTTCAAGGTGTTGAAGCA 258
Query 63 AGTTCATCCAGATATCGGAATCTCTGGGAAAGCGATGGGAATCATGAACAGTTTCATCAA 122
|||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 259 AGTTCATCCAGATATCGGAATCTCCAGCAAAGCCATGGGAATCATGAACAGTTTCATCAA 318
Query 123 CGACATCTTCGAGAAACTCGCTCAG-GAATCATCGC-GATTGGCTAGGTACAACAAGAAG 180
|| ||||| |||||||| ||| | || || ||| | ||| | |||||||||||||||
Sbjct 319 TGATATCTTTGAGAAACTTGCTG-GTGAGTCTTCGAAGCTTG-CGAGGTACAACAAGAAG 376
Query 181 CCGACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTGTTGCCTGGAGAACTC 240
|||||||| |||||| |||| |||||||| |||||||||||||||||||||||||| |
Sbjct 377 CCGACGATTACTTCTAGGGAGATTCAGACTGCGGTGAGACTTGTGTTGCCTGGAGAGTTG 436
Query 241 TCGAAACACGCTGTTTCTGAAGGCACTAAGGCGGTTAC 278
||||||| |||||||||||||| ||||||||||||||
Sbjct 437 GCGAAACATGCTGTTTCTGAAGGGACTAAGGCGGTTAC 474
> AT3G09480.1 | Symbols: | Histone superfamily protein | chr3:2914714-2915321
REVERSE LENGTH=608
Length=608
Score = 296 bits (160), Expect = 7e-80
Identities = 246/288 (85%), Gaps = 4/288 (1%)
Strand=Plus/Plus
Query 3 GAAGAA-ATCGAAGAAGAACATC-GAGACGTACAAGATCTACATCTTCAAGGTTTTGAAG 60
|||||| | | ||||||| || | |||||||||||||||||| | |||||||| |||||
Sbjct 138 GAAGAAGA-CTAAGAAGAGCA-CAGAGACGTACAAGATCTACCTATTCAAGGTGTTGAAA 195
Query 61 CAAGTTCATCCAGATATCGGAATCTCTGGGAAAGCGATGGGAATCATGAACAGTTTCATC 120
||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 196 CAAGTTCATCCTGATATCGGGATCTCTGGAAAAGCCATGGGAATCATGAACAGTTTCATC 255
Query 121 AACGACATCTTCGAGAAACTCGCTCAGGAATCATCGCGATTGGCTAGGTACAACAAGAAG 180
||||||| |||||||||| | |||| |||||| ||||||||||||||||| ||||||||
Sbjct 256 AACGACACCTTCGAGAAAATTGCTCTGGAATCGTCGCGATTGGCTAGGTATAACAAGAAA 315
Query 181 CCGACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTGTTGCCTGGAGAACTC 240
||||||||||| || |||||||| || || || || || || ||||||||||| ||| |
Sbjct 316 CCGACGATCACGTCCCGGGAAATCCAAACCGCCGTAAGGCTCGTGTTGCCTGGTGAATTA 375
Query 241 TCGAAACACGCTGTTTCTGAAGGCACTAAGGCGGTTACAAAATTCACC 288
|||| |||||||||||||| || || || || || || |||||||||
Sbjct 376 GCGAAGCACGCTGTTTCTGAGGGTACCAAAGCCGTCACCAAATTCACC 423
> AT5G02570.1 | Symbols: | Histone superfamily protein | chr5:576742-577140
REVERSE LENGTH=399
Length=399
Score = 283 bits (153), Expect = 6e-76
Identities = 245/289 (85%), Gaps = 8/289 (3%)
Strand=Plus/Plus
Query 3 GAAGAA-ATCGAAGAAGAACATC-GAGACGTACAAGATCTACATCTTCAAGGTTTTGAAG 60
|||||| | ||||||||| || | |||||||||||||||||||| |||||||| |||||
Sbjct 105 GAAGAAGA-CGAAGAAGAGCA-CAGAGACGTACAAGATCTACATTTTCAAGGTATTGAAA 162
Query 61 CAAGTTCATCCAGATATCGGAATCTCTGGGAAAGCGATGGGAATCATGAACAGTTTCATC 120
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 163 CAGGTTCATCCAGATATTGGAATCTCTGGTAAAGCGATGGGAATCATGAACAGTTTCATC 222
Query 121 AACGACATCTTCGAGAAACTCGCTCAGGAATCATCGCGAT-TGGCTAGGTACAACAAGAA 179
|||||||| ||||||||||||||||||||||| || || | | ||| | ||||| |||||
Sbjct 223 AACGACATTTTCGAGAAACTCGCTCAGGAATCGTCTCG-TCTCGCTCGTTACAATAAGAA 281
Query 180 GCCGACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTGT-TGCCTGGAGAAC 238
||||||||||| ||||| ||||| || || || ||||||||||| | ||||||| |||
Sbjct 282 ACCGACGATCACGTCTCGTGAAATCCAAACCGCCGTGAGACTTGT-TCTGCCTGGTGAAT 340
Query 239 TCTCGAAACACGCTGTTTCTGAAGGCACTAAGGCGGTTACAAAATTCAC 287
| | || || || || |||||||| || || || || || ||||||||
Sbjct 341 TGGCTAAGCATGCCGTCTCTGAAGGAACCAAAGCTGTCACCAAATTCAC 389
> AT3G45980.1 | Symbols: H2B, HTB9 | Histone superfamily protein
| chr3:16897287-16898013 REVERSE LENGTH=727
Length=727
Score = 252 bits (136), Expect = 2e-66
Identities = 242/292 (83%), Gaps = 11/292 (4%)
Strand=Plus/Plus
Query 3 GAAGAA-ATCGAAGAAGAACA---TCGAGACGTACAAGATCTACATCTTCAAGGTTTTGA 58
|||||| || ||||||||| | | || || |||||||||||||||||||||||| |||
Sbjct 225 GAAGAAGAT-GAAGAAGAAGAGTGTGGAAACTTACAAGATCTACATCTTCAAGGTTCTGA 283
Query 59 AGCAAGTTCATCCAGATATCGGAATCTCTGGGAAAGCGATGGGAATCATGAACAGTTTCA 118
| ||||||||||||||||| || || || | || || ||||| || |||||||||||||
Sbjct 284 AACAAGTTCATCCAGATATTGGTATTTCAAGCAAGGCTATGGGTATTATGAACAGTTTCA 343
Query 119 TCAACGACATCTTCGAGAAACTCGC-TCAGGAATCATCGC-GATTGGCTAGGTACAACAA 176
|||||||||||||||||||| | || || |||||| || | | | ||||||| |||||
Sbjct 344 TCAACGACATCTTCGAGAAATTGGCATC-GGAATCTTCAAAGCTCG-CTAGGTATAACAA 401
Query 177 GAAGCCGACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTG-TTGCCTGGAG 235
|||||||||||| ||||||||||| |||||||| || || ||||| || || ||||| |
Sbjct 402 GAAGCCGACGATTACTTCTCGGGAGATTCAGACTGCTGTTAGACTCGTTCTT-CCTGGTG 460
Query 236 AACTCTCGAAACACGCTGTTTCTGAAGGCACTAAGGCGGTTACAAAATTCAC 287
| ||| | |||||||||||||||||||| || ||||| ||||| ||||||||
Sbjct 461 AGCTCGCTAAACACGCTGTTTCTGAAGGAACCAAGGCTGTTACCAAATTCAC 512
> AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein |
chr3:16913448-16914131 REVERSE LENGTH=684
Length=684
Score = 252 bits (136), Expect = 2e-66
Identities = 235/281 (84%), Gaps = 13/281 (5%)
Strand=Plus/Plus
Query 3 GAAGAA-ATCGAAGAAGAACA---TCGAGACGTACAAGATCTACATCTTCAAGGTTTTGA 58
|||||| || ||||||||| | | |||||||||||||||||||||||||||||| |||
Sbjct 221 GAAGAAGAT-GAAGAAGAAGAGTGTTGAGACGTACAAGATCTACATCTTCAAGGTTCTGA 279
Query 59 AGCAAGTTCATCCAGATATCGGAATCTCTGGGAAAGCGATGGGAATCATGAACAGTTTCA 118
| ||||||||||||||||| || || || | ||||| ||||| || |||||||||||||
Sbjct 280 AACAAGTTCATCCAGATATTGGTATTTCAAGCAAAGCTATGGGGATTATGAACAGTTTCA 339
Query 119 TCAACGACATCTTCGAGAAACTCGC-TCAGGAATCATCGC-GATTGGCTAGGTACAACAA 176
||||||||||||| |||||| | || || |||||| ||| | | | | ||||| || ||
Sbjct 340 TCAACGACATCTTTGAGAAATTGGCATC-GGAATCGTCGAAGCTCG-CGAGGTATAATAA 397
Query 177 GAAGCCGACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTG-TTGCCTGGAG 235
|||||||||||| ||||||||||| |||||||| || || |||||||| || ||||| |
Sbjct 398 GAAGCCGACGATTACTTCTCGGGAGATTCAGACTGCTGTTAGACTTGTTCTT-CCTGGTG 456
Query 236 AACTCT-CGAAACACGCTGTTTCTGAAGGCACTAAGGCGGT 275
| || | ||||||| |||||||||||||| |||||||||||
Sbjct 457 AGCT-TGCGAAACATGCTGTTTCTGAAGGAACTAAGGCGGT 496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13572292230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5