BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898314
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53790.1 | Symbols: TRFL4 | TRF-like 4 | chr3:19928478-19930... 972 0.0
> AT3G53790.1 | Symbols: TRFL4 | TRF-like 4 | chr3:19928478-19930267
FORWARD LENGTH=1065
Length=1065
Score = 972 bits (526), Expect = 0.0
Identities = 639/693 (92%), Gaps = 10/693 (1%)
Strand=Plus/Plus
Query 513 CGTTAAGTTCGGTATCAAATCATTGCAA-ATCTCGGAGCTATTGGTGGACATTCCCGAAT 571
||| || |||||||| || || ||| || ||||||||||||||||| ||| |||||||||
Sbjct 378 CGTGAAATTCGGTATTAAGTCGTTG-AATATCTCGGAGCTATTGGTAGACGTTCCCGAAT 436
Query 572 CAGCCACGGTTGGCTCACTGAAACTAGCGGTATTGGACGCAGTAACGCGGATTCTTAAGG 631
||||||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||
Sbjct 437 CAGCCACGGTTGGCTCACTGAAACTAGCGGTATTGGAGGCGGTAACGCAGATTCTCAAGG 496
Query 632 ATGGATTAAACATTGGAGTGCTTC-TTCGAGGTAAAACCATCGTTGATGACTCCAAAATG 690
|||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| |
Sbjct 497 GTGGATTAAACATTGGAGTGC-TCTTTCAAGGTAAAACCATCGTTGATGACTCCAAAACG 555
Query 691 CTCCTTCAGATTGGGATCCCACACGATGATGACGATGACCAGAACCTCAGTTCATTGGGA 750
|| |||||||||||||||||| ||||||||||||||||| | |||||| |||| ||||||
Sbjct 556 CTTCTTCAGATTGGGATCCCATACGATGATGACGATGACGAAAACCTCGGTTCTTTGGGA 615
Query 751 TTCATGCTAGAACCACAGAAATCAGAAACAACGACAATAACAACGTTAAACAATGTTTAC 810
|||||||||||||| || |||||||||||||| |||||||||||||||| || ||||| |
Sbjct 616 TTCATGCTAGAACCGCAAAAATCAGAAACAACAACAATAACAACGTTAACCACTGTTTCC 675
Query 811 CCGAGAACACGACTTAGACAAAAT-AGGGTTCTAGGGTCCGTGGATAGCACTGAGGTGA- 868
|||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| |
Sbjct 676 CCGAGAACACGACTTAGACAAAATCA-GGTCCTAGGGTCCGTGGATAGCACTGAGG-CAG 733
Query 869 TGGCAGCTAAATCCGTGGTTCCGGTGCGCATGAAACCGGCCTCGCAGCCAGAGATAGTTC 928
| |||||||||||||||||||| || || ||||||||||||| |||||||||||| ||||
Sbjct 734 TAGCAGCTAAATCCGTGGTTCCAGTACGTATGAAACCGGCCTGGCAGCCAGAGATGGTTC 793
Query 929 AACGGAGAATCAGACGTCCATTCACTGTCTCAGAAGTAGAAGCTTTAGTTCAGGCCGTAG 988
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 794 AACGGAGAATAAGACGGCCATTCACTGTCTCAGAAGTAGAAGCTTTGGTTCAGGCCGTAG 853
Query 989 AGAGGCTCGGCACCGGAAGGTGGCGCGACGTTAAGTGTCATGCATTTGACCATGCT-AAT 1047
||||||||||||||||||||||||||||||| |||| |||||||||| |||||| | |||
Sbjct 854 AGAGGCTCGGCACCGGAAGGTGGCGCGACGTGAAGTCTCATGCATTTAACCATG-TAAAT 912
Query 1048 CATCGAACTTACGTTGACCTCAAGGATAAATGGAAAACGTTGGTTCACACGGCAAAGATA 1107
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 CATCGTACCTACGTTGACCTCAAGGATAAATGGAAAACGTTGGTTCACACGGCAAAGATA 972
Query 1108 TCAGCAAGACAAAGGAGAGGCGAACCTGTGCCTCAAGACCTTCTTGATAGGGTTTTAGCT 1167
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 TCAGCAAGGCAAAGGAGAGGCGAACCTGTGCCTCAAGACCTTCTTGATAGGGTTTTAGCT 1032
Query 1168 GCTCATGCTTTCTGGTCTGACCGGACCAGATGA 1200
||||||||||||||||||||||||||| |||||
Sbjct 1033 GCTCATGCTTTCTGGTCTGACCGGACCGGATGA 1065
Score = 448 bits (242), Expect = 8e-125
Identities = 337/382 (88%), Gaps = 9/382 (2%)
Strand=Plus/Plus
Query 1 ATGGTGGACTGTGGTGTCGATGCCTACCAACTTCCTGTTGTTCCTAGGGCATGTAGATCA 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGGACTGTGGTGTCGATATTTACCAACTTCCTGTTGTTCCTAGGGCATGTAGATCA 60
Query 61 CCCAGAGGACGCATGC-AAAGACTGATGAAAAAACAAAGATCTGATTTCGAGGTTTTAGC 119
||||||||||||| || ||| | | |||| |||||||||||| || ||||||||||||||
Sbjct 61 CCCAGAGGACGCAGGCTAAAAATT-ATGAGAAAACAAAGATCGGAGTTCGAGGTTTTAGC 119
Query 120 CCAAGTGGCTGAAAAGCT-CTCAGGCGAGCGCAAGCACCGAGTTGCTATCGGCTCGTTGG 178
||||||||||| || | | |||||| ||||| || ||||| ||| ||||||||||||||
Sbjct 120 CCAAGTGGCTGGAA-GATTCTCAGGTGAGCGTAAAAACCGAATTGTTATCGGCTCGTTGG 178
Query 179 CCCATAAAACAAAGGAGACAAAGAACGAT--T-TCATCTTCAATAACTTCTTGGAGACAA 235
| || ||||||||||||| ||| ||||| | || || |||||||||||||||||||||
Sbjct 179 CTCACGAAACAAAGGAGACGAAGGACGATAATGTCGTCGTCAATAACTTCTTGGAGACAA 238
Query 236 TGGAAGTTGAGGTTAAGCCTCAACTTGGTCCGGAGAAACCTT-CTCAGGTGTTATTGTCT 294
||||||||||||||||||| |||| ||||| |||||| |||| |||||||||||||||||
Sbjct 239 TGGAAGTTGAGGTTAAGCCGCAACCTGGTCTGGAGAA-CCTTTCTCAGGTGTTATTGTCT 297
Query 295 AAGGACTGGCTAGCTCTTGGTCCTTCCGCGTCTAACTCTCCAATCTCACAAGAAGAAAAG 354
||||||||| |||||||||| |||||| | ||||||| |||||| |||||||||||||
Sbjct 298 AAGGACTGGTTAGCTCTTGGCCCTTCCATGCCTAACTCGCCAATCACACAAGAAGAAAAC 357
Query 355 TTTGATTCACATTCCAAGATCG 376
|||||||||| |||||||||||
Sbjct 358 TTTGATTCACGTTCCAAGATCG 379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58935439830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5