BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898320
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1072 0.0
AT2G31600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 861 0.0
> AT3G53860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G31600.1); Has 70 Blast
hits to 70 proteins in 17 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other
Eukaryotes - 4 (source: NCBI BLink). | chr3:19949562-19951290
REVERSE LENGTH=1154
Length=1154
Score = 1072 bits (580), Expect = 0.0
Identities = 786/879 (89%), Gaps = 39/879 (4%)
Strand=Plus/Plus
Query 1 ATGGCGTCAGCTCCCAAGAACATTGAGCAAAAGCCTTTCTCCTTAAAACCCCCAAGGCCT 60
|||||||||||| ||||||||| ||||||||| ||||||||||| ||||||||||| |||
Sbjct 21 ATGGCGTCAGCTGCCAAGAACACTGAGCAAAACCCTTTCTCCTTGAAACCCCCAAGACCT 80
Query 61 CCGTCTTCCTCCGGCGCTGTATCTTCAACCTTC-GTTGCTTCCACTTCAGTAGAACCCCA 119
|||||||||||| ||||| |||||| ||| | || |||||||||||||| ||||||||
Sbjct 81 CCGTCTTCCTCCAACGCTGCATCTTCCACC-GCTGTGGCTTCCACTTCAGTTGAACCCCA 139
Query 120 AATTAGGAACCCTAACCCTAGCACAAACGCCTTACCATCGACCTCGAATTCACCAATTAC 179
|||| |||||||||| ||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 140 AATTCGGAACCCTAAACCTAGCACAAACGTCTTACCATCGACCTCGAATTCACCGATTAC 199
Query 180 GATGTCACAAGAAGATGAATTACTCGCACGCTCCAGTCACCTCACACCCCCAGAGC-TCT 238
||||| ||||||||||||| | |||||| |||| ||||||||||||| |||||||| ||
Sbjct 200 GATGTTACAAGAAGATGAAATCCTCGCAAGCTCTAGTCACCTCACACGCCCAGAGCTTC- 258
Query 239 TACGACGCCGAGCACACAATCTTAAGCAGCTCGCCAAGTGCTATAAAAACCATTATTGGG 298
| |||||||||||| |||| || |||||||| |||||||| |||||||||||||||||||
Sbjct 259 TCCGACGCCGAGCAGACAACCTAAAGCAGCTGGCCAAGTGTTATAAAAACCATTATTGGG 318
Query 299 CTTTAATGGAGGATCTCAAGACGCAACACAGGGATTATTGGTGCAAGTATGGGATTAGTC 358
|||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||
Sbjct 319 CTTTAATGGAGGATCTCAAGGCGCAACACAGGGATTATTGGTGTAAGTATGGGGTTAGTC 378
Query 359 AGTTCAAAGACCAACAGAATCAATCGAATAAGAGACGGAGGCTTGGTCCAGAAGGAGAAA 418
|||| |||||| |||| ||||||||||||||||||||||||| | | | |
Sbjct 379 AGTTTAAAGACGAACAAAATCAATCGAATAAGAGACGGAGGC-T--T---------G--A 424
Query 419 TCGGAGCCGTTGAAGGTAGTGGAGATAAGGCTAATGATGGTGGTAATGGTGATGTGTATG 478
| || ||||||||||||||||||| |||||||||| | | | | |||||
Sbjct 425 T-----CC--AGAAGGTAGTGGAGATAAGGGTAATGATGGT-G--A---TCA---GTATG 468
Query 479 CAAACAACAA-T--GGGAGCTGTATGTATGGATGCAAAGCTAAAGCTATGGCGCTTACCA 535
|||||| ||| | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 469 CAAACAGCAATTCCGGGTTCTGTATGTATGGATGCAAAGCTAAAGCTATGGCGCTTACCA 528
Query 536 AATACTGTCAACTGCATATTCTCAAAGATAGTAAGCAGAAGCTCTACACTGGTTGCACAA 595
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 529 AATACTGTCAATTGCATATTCTCAAGGATAGTAAGCAGAAGCTCTACACTGGTTGCACAA 588
Query 596 ACGTCATCAACAGATCTCCAGCAGGACCATTACTTTGTGGAAAACCAACACTTGCATCGA 655
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 589 ACGTCATCAACAGATCTCCAGCAGGACCATTACTTTGTGGAAAACCAACACTAGCATCGA 648
Query 656 CTGTTCCTGTACTGTGTAATGTGCACTACCAGAGAGCACAAAAGAATGTTGCCAAAGCTT 715
||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||
Sbjct 649 CTGTTCCTGTACTGTGTAACGTGCACTACCAGAAAGCACAGAAGAATGTTGCCAAAGCTT 708
Query 716 TAAAAGATGCTGGTCATAATGTCTCTTCAACAAGCAAGCCTCCCCCAAAGCTCCATGCTT 775
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 709 TAAAAGATGCTGGTCACAATGTCTCTTCAACAAGCAAGCCTCCCCCAAAGCTCCATG-TT 767
Query 776 -TAGTAGCTGCATTTGTGCATCACATTCAAGCACAGAGAAAAAAGGCACACAAGGATGGT 834
|||||||||||||||||||||||||||||||||| |||||||| |||| ||||| |||
Sbjct 768 ATAGTAGCTGCATTTGTGCATCACATTCAAGCACAAAGAAAAAATCCACATAAGGAGGGT 827
Query 835 AAACTTAAAAGCGTAGTAAAAGAAGAAATGACAAGCTGA 873
||||||||||| |||||||| ||||||||||||||||||
Sbjct 828 AAACTTAAAAGTGTAGTAAAGGAAGAAATGACAAGCTGA 866
> AT2G31600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G53860.1); Has 35333
Blast hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr2:13448190-13450095 REVERSE LENGTH=1269
Length=1269
Score = 861 bits (466), Expect = 0.0
Identities = 775/916 (85%), Gaps = 53/916 (6%)
Strand=Plus/Plus
Query 1 ATGGCGTCAGCTCCCAAGAACATTGAGCAAAAGCCTTTCTCCTTAAAACCCCCAAGGCCT 60
|||||||||||| ||||||||||| ||||||| |||||||||| ||||| ||| |||||
Sbjct 13 ATGGCGTCAGCTTCCAAGAACATTCAGCAAAACCCTTTCTCCTCGAAACCACCACGGCCT 72
Query 61 CCGTCTTCCTCCGGCGCTGTATCTTCAACCTTC-GTTGCTTCCACTTCAGTAGA-ACCC- 117
|||| |||||||||||||| ||| ||||| | || |||||||| |||| || |||
Sbjct 73 CCGTATTCCTCCGGCGCTGCATCAACAACC-GCAGTGGCTTCCACCTCAGCCGAGCCCCT 131
Query 118 ----C-AAA-T-TA---GGAACCCTAACCCTAGCACAAACGCCTTACCATCGACCTCGAA 167
| ||| | || || |||||||||||||| | || |||||| ||||| |||||
Sbjct 132 AATTCGAAACTCTACCTTAAATCCTAACCCTAGCACCAGCGGCTTACCGTCGACATCGAA 191
Query 168 TTCACCAATTACGATGTCACAAGAAGATGAATTACTCGCACGCTCCAGTCACCTCACACC 227
|||||| |||||||||||||||||||||||| | |||||||||||||||||| | | |||
Sbjct 192 TTCACCGATTACGATGTCACAAGAAGATGAAATCCTCGCACGCTCCAGTCACAT-A-ACC 249
Query 228 C--CCAGAGC-TCTTACGACGCCGAGCACACAATCTTAAGCAGCTCGCCAAGTGCTATAA 284
| | |||| ||| | ||||||| ||||||| || |||||||| |||||||| ||||
Sbjct 250 CGGTCGGAGCTTCTCA-AACGCCGATCACACAACCTGAAGCAGCTGGCCAAGTGTTATAG 308
Query 285 AAACCATTATTGGGCTTTAATGGAGGATCTCAAGACGCAACACAGGGATTATTGGTGCAA 344
| || ||||||||||||||||||||||| ||||| | |||||||||||||||||||| ||
Sbjct 309 AGACAATTATTGGGCTTTAATGGAGGATGTCAAGGCACAACACAGGGATTATTGGTGGAA 368
Query 345 GTATGGGATTAGTCAGTTCAAAGACCAACAGAATCAATCGAATAAGAGACGGAGGCTTGG 404
|||||||||||||||||| |||||| || | |||||||||||||||||||||||||||||
Sbjct 369 GTATGGGATTAGTCAGTTTAAAGACGAAAATAATCAATCGAATAAGAGACGGAGGCTTGG 428
Query 405 TCCAGAAGGAG--A----A-A---TCG-GA-GCCGTTGAAGGTAGTGGAGATAA-G--GC 449
|| ||| |||| | | | | | || || ||||||||||||||||| || | |
Sbjct 429 TCAAGAGGGAGATATCGGAGATGGTGGTGATGCTGTTGAAGGTAGTGGAGACAATGTTAC 488
Query 450 T---AATGATGGTGGTAATG-GTGATGTGTATGC-AA-A-CAACAATGGGAGCTGTATGT 502
| |||||||||| ||| | ||||| |||||| || | || |||||| |||||||
Sbjct 489 TAACAATGATGGTGTTAA-GAGTGATCAGTATGCGAATAGTAATTGTGGGAGTTGTATGT 547
Query 503 ATGGATGCAAAGCTAAAGCTATGGCGCTTACCAAATACTGTCAACTGCATATTCTCAAAG 562
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
Sbjct 548 ATGGATGCAAAGCTAAAGCTATGGCGCTTACGAAATACTGTCAATTGCATATTCTCAAGG 607
Query 563 ATAGTAAGCAGAAGCTCTACACTGGTTGCACAAACGTCA-TCAACAGATCTCCAGCAGGA 621
||||||||||||||||||||||||||||||||||||||| | ||| || | |||||||||
Sbjct 608 ATAGTAAGCAGAAGCTCTACACTGGTTGCACAAACGTCATTAAAC-GAGCCCCAGCAGGA 666
Query 622 CCATTACTTTGTGGAAAACCAACACTTGCATCGACTGTTCCTGTACTGTGTAATGTGCAC 681
||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | |||
Sbjct 667 CCATTACTTTGTGGAAAACCAACACTTGCGTCGACTGTTCCTGCACTGTGTAATATACAC 726
Query 682 TACCAGAGAGCACAAAAGAATGTTGCCAAAGCTTTAAAAGATGCTGGTCATAATGTCTCT 741
| ||||| ||| |||||| |||| || ||||||||||| |||||||||||||||||||||
Sbjct 727 TTCCAGAAAGCCCAAAAGCATGTGGCTAAAGCTTTAAAGGATGCTGGTCATAATGTCTCT 786
Query 742 TCAACAAGCAAGCCTCCCCCAAAGCTCCATGCTT-TAGTAGCTGCATTTGTGCATCACAT 800
||||||||||||||||||||||||||||||| || |||||||||| ||||||||||| ||
Sbjct 787 TCAACAAGCAAGCCTCCCCCAAAGCTCCATG-TTATAGTAGCTGCGTTTGTGCATCATAT 845
Query 801 TCAAGC-ACAGAGAAAAAAGGCACACAAGGA-TGGTAAACTTAAAAGCGTAGTAAAAGAA 858
|||||| | | ||||||| |||| ||||| || |||||||||||| ||||||||||||
Sbjct 846 TCAAGCGAAAC-GAAAAAATCCACAGAAGGAGTG-TAAACTTAAAAGTGTAGTAAAAGAA 903
Query 859 GAAA-TGACAAGCTGA 873
|||| | |||||||||
Sbjct 904 GAAAAT-ACAAGCTGA 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42598556656
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5