BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898329
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31180.1 | Symbols: | Class II aminoacyl-tRNA and biotin sy... 1639 0.0
> AT4G31180.1 | Symbols: | Class II aminoacyl-tRNA and biotin
synthetases superfamily protein | chr4:15155879-15159589 FORWARD
LENGTH=2126
Length=2126
Score = 1639 bits (887), Expect = 0.0
Identities = 1372/1595 (86%), Gaps = 77/1595 (5%)
Strand=Plus/Plus
Query 111 AGAGAAGTTACGCA-GCCGGCAGGAACAAGAGGAAGCCACTCGTAAG-ACAGCTTCAAAG 168
|||||||||| | | | || || |||||||||||||| || ||| | |||||||| |
Sbjct 330 AGAGAAGTTAAG-ACGTCGTCAAGAACAAGAGGAAGCAACGCGT-CGAACAGCTTCGATC 387
Query 169 TCTCTCGAAGAAG-ATGACGAGTTTT-CAAGTAACTACGGCGACGTGACTCTTAACGAGT 226
||||| |||| || |||||||||||| ||| ||||||||||||||||||||||| |||||
Sbjct 388 TCTCTGGAAG-AGAATGACGAGTTTTCCAA-TAACTACGGCGACGTGACTCTTACCGAGT 445
Query 227 TGCAATCGACGGAGGATCCGAAAGCC-GGAATATGGAGAGAGGCTGTTGAAGGG-AAGAA 284
|||||||| ||| ||||||||||||| |||| |||| ||||||||||| |||| ||| |
Sbjct 446 TGCAATCGTCGGCGGATCCGAAAGCCGGGAA-GTGGATAGAGGCTGTTG-AGGGAAAGGA 503
Query 285 GTGGACTGAAGTGAGTAAATTGGTGGAAGAAATAG-CGGGATCTGAGGTTTTGATAAGAG 343
|||||| || ||||| | ||||||||||| || | || ||| |||||| |||| ||||
Sbjct 504 GTGGACCGATGTGAGCGATTTGGTGGAAGAGAT-GTTGGAATCAGAGGTTCTGATCAGAG 562
Query 344 GCCGAGTTCACACGTATCGCGTACAAC--CTAGC--A-TAGTGTTTGTGATCTTGAGGAA 398
||||||| |||||| || ||| |||| ||| | | | | ||||||| |||||||| |
Sbjct 563 GCCGAGTGCACACGAAT--CGTCCAACGTCTAACAAATTGGGGTTTGTGGTCTTGAGGGA 620
Query 399 AAGTGGATCCACTGTTCAGTGCGTGGCCAAG-CAATCGGAGGAGACCAACGTTA-GCGTC 456
|| ||||| |||||||||||||||| || ||||| ||| ||||||| | || | | |
Sbjct 621 GAGCGGATCAACTGTTCAGTGCGTGG-TTAGCCAATCAGAGAAGACCAAAG-TAGGTGCC 678
Query 457 AACATGATTAAATACCTCGAGAAGCTGAGTTGCGAATCCATTGTCGATGTCATCGGTGTC 516
|||||| ||||||||||| || |||||||| |||||||| |||||||||| |||||||||
Sbjct 679 AACATGGTTAAATACCTCAAGCAGCTGAGTCGCGAATCCTTTGTCGATGTTATCGGTGTC 738
Query 517 GTCGTTCTCCCCAAAGA-CC-CTGTAAAGGGAACTACGCAGCAGGTTGAAATTCAGGTGA 574
||| ||||||||| || || ||| | ||||||||||||||||||||||||||| ||||
Sbjct 739 GTCACTCTCCCCAAGGAGCCGCTG--ACGGGAACTACGCAGCAGGTTGAAATTCAAGTGA 796
Query 575 G-AAAGCTGTACTGCGTCAACAAAGCCTT-GACAAGATTACCATTTAATGTGGAGGCTGC 632
| |||| |||||||| |||||||| |||| | ||| ||||||| ||| |||||||| |||
Sbjct 797 GAAAAG-TGTACTGCATCAACAAATCCTTGGCCAA-ATTACCACTTAGTGTGGAGGATGC 854
Query 633 TGCCCGAAGTG-A--A-A-CT-G--G-A-------AGA--CGAGCT---G-TG--CGTGT 668
||| || |||| | | | | | | | ||| | | || | || |||||
Sbjct 855 TGCTCGGAGTGAAGCAGATATCGAAGCATCTCTTCAGACTCCATCTCCAGCTGCTCGTGT 914
Query 669 CAATCAGGATACACGTTTGAATC-ATAGGGTGATTGACCTCAGAACACCGGCTAATCAAG 727
||||||||||||||||||||| | |||||||| | |||||||||||||||||||||||||
Sbjct 915 CAATCAGGATACACGTTTGAA-CTATAGGGTGCTCGACCTCAGAACACCGGCTAATCAAG 973
Query 728 CCATCGTCGC-CCTTAAGTCCCAACTCGTAA-ATTTTTTCAGTGAAAATTTGCTATCCAA 785
||||| || | ||| ||| | || ||| || || ||||| ||||| || | || ||
Sbjct 974 CCATCTTC-CAGCTTCAGTACGAAGTCG-AATATGCCTTCAGAGAAAAATTACGATTTAA 1031
Query 786 GGATTTCGTT-AATATCTTCACACCGAAACTCCTGGCCGGTAGTAGTGAAGGAGGTTCTG 844
| |||| ||| | ||| |||||| ||||| |||| ||||||||||||||||||||||
Sbjct 1032 GAATTTTGTTGGA-ATCCACACACCAAAACTGATGGCTGGTAGTAGTGAAGGAGGTTCTG 1090
Query 845 CTGTATTTAGGTTGGAATACCAAGGACAGCCTGCTTGTCTAGCTCAGTCTCCTCAGCTTC 904
|||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| |
Sbjct 1091 CTGTATTTAGGTTGGAATACAAAGGGCAACCTGCTTGTCTAGCTCAGTCTCCTCAGCTCC 1150
Query 905 ACAAGCAAATGGCAATATGTGGTGACTTACGACGCGTCTTTGAGATAGGTCCTGTTTTCA 964
|||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||
Sbjct 1151 ACAAGCAAATGGCAATATGTGGTGACTTGCGACGTGTCTTTGAGGTAGGTCCTGTTTTCA 1210
Query 965 GAGCAGAAAAGTCGTTCTCTCATAGACATCTGTGTGAATTTGTGGGTCTTGATGTGGAGA 1024
| || ||| | || ||| |||||||||| ||||||||||| || ||||||||||||||||
Sbjct 1211 GGGCCGAAGACTCCTTCACTCATAGACACCTGTGTGAATTCGTTGGTCTTGATGTGGAGA 1270
Query 1025 TGGAGATT-GATAAACACTATTCTGAGATAATGGACCTTGTGGACGAGTTATTTGTGGCT 1083
|||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1271 TGGAGATTCG-GAAACACTATTCTGAGATAATGGATCTTGTGGACGAGTTATTTGTGTTT 1329
Query 1084 ATATTCACTAGTTTGAAT-AGCAAGTGCAAAAAGGAACTTG-AAGCTATTGGAAAGCAAT 1141
|||||||||||||||||| || | ||||||||| |||| || ||||| ||||||||||||
Sbjct 1330 ATATTCACTAGTTTGAATGAG-AGGTGCAAAAAAGAAC-TGCAAGCTGTTGGAAAGCAAT 1387
Query 1142 ACCCATTTGAACCTTTGAAGTTTCT-TGAAAAGACATTGAGGTTAACCTTTGAAGAAGGG 1200
||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 1388 ACCCATTTGAACCTTTGAAGTTTCTACCAAAA-ACATTGAGGTTAACGTTTGAAGAAGGG 1446
Query 1201 GTTCAAATGCTTAAGGAAGCTGGTGTGGAGATTGATCCTCTAGGCGATCTAAACACTGAA 1260
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1447 GTTCAAATGCTTAAGGAAGCTGGTGTGGAGGTTGATCCTCTTGGCGATCTAAACACTGAA 1506
Query 1261 TCTGAGAGAAAACTTGGCCAACTTGTACTGGAAAAGTACAACACTGAGTTCTATATTCTG 1320
|||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1507 TCTGAGAGAAAACTAGGCCAGCTTGTATTGGAAAAGTACAACACTGAGTTCTATATTCTG 1566
Query 1321 CATAGGTTTCCTACGGCCGTTAGGCCTTTCTACACTATGACTTGTGTTGATAATCCTCTT 1380
||| ||| ||||| ||| ||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1567 CATCGGTATCCTAAGGCAGTTAGGCCTTTCTACACAATGACTTGTGCCGATAATCCTCTT 1626
Query 1381 TACAGCAACTCCTTTGATGTCTTCATCAGAGGTGAGGAGATCATATCAGGAGCTCAACGT 1440
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1627 TACAGCAACTCTTTTGATGTCTTCATCAGAGGTGAGGAGATCATATCAGGAGCTCAACGT 1686
Query 1441 GTCCATATCCCAGAATTATTGGAGCAACGTGCGAGGGAGCACG-GG-ATTGATGTCAAGA 1498
||||||||||||||| | |||||||||||||| ||| || | | || |||||||||||||
Sbjct 1687 GTCCATATCCCAGAAGTCTTGGAGCAACGTGC-AGG-AGAATGTGGCATTGATGTCAAGA 1744
Query 1499 CAATATCCACATACATCGATTCATTCAGGTATGGTGCGCCTCCACACGGTGGATTTGGAG 1558
|||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1745 CAATATCCACATACATTGATTCATTCAGGTACGGTGCGCCTCTACACGGTGGATTTGGAG 1804
Query 1559 CGGGGCTGGAGCGAGTGGTCATGCTTTTCTGTGGACTGAACAACATCCGGAAAACATCGC 1618
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
Sbjct 1805 TGGGGCTGGAGCGAGTGGTCATGCTTTTCTGTGCACTGAACAACATTCGGAAAACATCCC 1864
Query 1619 TCTTCCCTCGCGACCCTCAAAGGCTTGCACCCTAA 1653
|||||||||| ||||||||||||||| ||||||||
Sbjct 1865 TCTTCCCTCGTGACCCTCAAAGGCTTTCACCCTAA 1899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81676286715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5