BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg898329 Length=1653 Score E Sequences producing significant alignments: (Bits) Value AT4G31180.1 | Symbols: | Class II aminoacyl-tRNA and biotin sy... 1639 0.0 > AT4G31180.1 | Symbols: | Class II aminoacyl-tRNA and biotin synthetases superfamily protein | chr4:15155879-15159589 FORWARD LENGTH=2126 Length=2126 Score = 1639 bits (887), Expect = 0.0 Identities = 1372/1595 (86%), Gaps = 77/1595 (5%) Strand=Plus/Plus Query 111 AGAGAAGTTACGCA-GCCGGCAGGAACAAGAGGAAGCCACTCGTAAG-ACAGCTTCAAAG 168 |||||||||| | | | || || |||||||||||||| || ||| | |||||||| | Sbjct 330 AGAGAAGTTAAG-ACGTCGTCAAGAACAAGAGGAAGCAACGCGT-CGAACAGCTTCGATC 387 Query 169 TCTCTCGAAGAAG-ATGACGAGTTTT-CAAGTAACTACGGCGACGTGACTCTTAACGAGT 226 ||||| |||| || |||||||||||| ||| ||||||||||||||||||||||| ||||| Sbjct 388 TCTCTGGAAG-AGAATGACGAGTTTTCCAA-TAACTACGGCGACGTGACTCTTACCGAGT 445 Query 227 TGCAATCGACGGAGGATCCGAAAGCC-GGAATATGGAGAGAGGCTGTTGAAGGG-AAGAA 284 |||||||| ||| ||||||||||||| |||| |||| ||||||||||| |||| ||| | Sbjct 446 TGCAATCGTCGGCGGATCCGAAAGCCGGGAA-GTGGATAGAGGCTGTTG-AGGGAAAGGA 503 Query 285 GTGGACTGAAGTGAGTAAATTGGTGGAAGAAATAG-CGGGATCTGAGGTTTTGATAAGAG 343 |||||| || ||||| | ||||||||||| || | || ||| |||||| |||| |||| Sbjct 504 GTGGACCGATGTGAGCGATTTGGTGGAAGAGAT-GTTGGAATCAGAGGTTCTGATCAGAG 562 Query 344 GCCGAGTTCACACGTATCGCGTACAAC--CTAGC--A-TAGTGTTTGTGATCTTGAGGAA 398 ||||||| |||||| || ||| |||| ||| | | | | ||||||| |||||||| | Sbjct 563 GCCGAGTGCACACGAAT--CGTCCAACGTCTAACAAATTGGGGTTTGTGGTCTTGAGGGA 620 Query 399 AAGTGGATCCACTGTTCAGTGCGTGGCCAAG-CAATCGGAGGAGACCAACGTTA-GCGTC 456 || ||||| |||||||||||||||| || ||||| ||| ||||||| | || | | | Sbjct 621 GAGCGGATCAACTGTTCAGTGCGTGG-TTAGCCAATCAGAGAAGACCAAAG-TAGGTGCC 678 Query 457 AACATGATTAAATACCTCGAGAAGCTGAGTTGCGAATCCATTGTCGATGTCATCGGTGTC 516 |||||| ||||||||||| || |||||||| |||||||| |||||||||| ||||||||| Sbjct 679 AACATGGTTAAATACCTCAAGCAGCTGAGTCGCGAATCCTTTGTCGATGTTATCGGTGTC 738 Query 517 GTCGTTCTCCCCAAAGA-CC-CTGTAAAGGGAACTACGCAGCAGGTTGAAATTCAGGTGA 574 ||| ||||||||| || || ||| | ||||||||||||||||||||||||||| |||| Sbjct 739 GTCACTCTCCCCAAGGAGCCGCTG--ACGGGAACTACGCAGCAGGTTGAAATTCAAGTGA 796 Query 575 G-AAAGCTGTACTGCGTCAACAAAGCCTT-GACAAGATTACCATTTAATGTGGAGGCTGC 632 | |||| |||||||| |||||||| |||| | ||| ||||||| ||| |||||||| ||| Sbjct 797 GAAAAG-TGTACTGCATCAACAAATCCTTGGCCAA-ATTACCACTTAGTGTGGAGGATGC 854 Query 633 TGCCCGAAGTG-A--A-A-CT-G--G-A-------AGA--CGAGCT---G-TG--CGTGT 668 ||| || |||| | | | | | | | ||| | | || | || ||||| Sbjct 855 TGCTCGGAGTGAAGCAGATATCGAAGCATCTCTTCAGACTCCATCTCCAGCTGCTCGTGT 914 Query 669 CAATCAGGATACACGTTTGAATC-ATAGGGTGATTGACCTCAGAACACCGGCTAATCAAG 727 ||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||| Sbjct 915 CAATCAGGATACACGTTTGAA-CTATAGGGTGCTCGACCTCAGAACACCGGCTAATCAAG 973 Query 728 CCATCGTCGC-CCTTAAGTCCCAACTCGTAA-ATTTTTTCAGTGAAAATTTGCTATCCAA 785 ||||| || | ||| ||| | || ||| || || ||||| ||||| || | || || Sbjct 974 CCATCTTC-CAGCTTCAGTACGAAGTCG-AATATGCCTTCAGAGAAAAATTACGATTTAA 1031 Query 786 GGATTTCGTT-AATATCTTCACACCGAAACTCCTGGCCGGTAGTAGTGAAGGAGGTTCTG 844 | |||| ||| | ||| |||||| ||||| |||| |||||||||||||||||||||| Sbjct 1032 GAATTTTGTTGGA-ATCCACACACCAAAACTGATGGCTGGTAGTAGTGAAGGAGGTTCTG 1090 Query 845 CTGTATTTAGGTTGGAATACCAAGGACAGCCTGCTTGTCTAGCTCAGTCTCCTCAGCTTC 904 |||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| | Sbjct 1091 CTGTATTTAGGTTGGAATACAAAGGGCAACCTGCTTGTCTAGCTCAGTCTCCTCAGCTCC 1150 Query 905 ACAAGCAAATGGCAATATGTGGTGACTTACGACGCGTCTTTGAGATAGGTCCTGTTTTCA 964 |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| Sbjct 1151 ACAAGCAAATGGCAATATGTGGTGACTTGCGACGTGTCTTTGAGGTAGGTCCTGTTTTCA 1210 Query 965 GAGCAGAAAAGTCGTTCTCTCATAGACATCTGTGTGAATTTGTGGGTCTTGATGTGGAGA 1024 | || ||| | || ||| |||||||||| ||||||||||| || |||||||||||||||| Sbjct 1211 GGGCCGAAGACTCCTTCACTCATAGACACCTGTGTGAATTCGTTGGTCTTGATGTGGAGA 1270 Query 1025 TGGAGATT-GATAAACACTATTCTGAGATAATGGACCTTGTGGACGAGTTATTTGTGGCT 1083 |||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 1271 TGGAGATTCG-GAAACACTATTCTGAGATAATGGATCTTGTGGACGAGTTATTTGTGTTT 1329 Query 1084 ATATTCACTAGTTTGAAT-AGCAAGTGCAAAAAGGAACTTG-AAGCTATTGGAAAGCAAT 1141 |||||||||||||||||| || | ||||||||| |||| || ||||| |||||||||||| Sbjct 1330 ATATTCACTAGTTTGAATGAG-AGGTGCAAAAAAGAAC-TGCAAGCTGTTGGAAAGCAAT 1387 Query 1142 ACCCATTTGAACCTTTGAAGTTTCT-TGAAAAGACATTGAGGTTAACCTTTGAAGAAGGG 1200 ||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||| Sbjct 1388 ACCCATTTGAACCTTTGAAGTTTCTACCAAAA-ACATTGAGGTTAACGTTTGAAGAAGGG 1446 Query 1201 GTTCAAATGCTTAAGGAAGCTGGTGTGGAGATTGATCCTCTAGGCGATCTAAACACTGAA 1260 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 1447 GTTCAAATGCTTAAGGAAGCTGGTGTGGAGGTTGATCCTCTTGGCGATCTAAACACTGAA 1506 Query 1261 TCTGAGAGAAAACTTGGCCAACTTGTACTGGAAAAGTACAACACTGAGTTCTATATTCTG 1320 |||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 1507 TCTGAGAGAAAACTAGGCCAGCTTGTATTGGAAAAGTACAACACTGAGTTCTATATTCTG 1566 Query 1321 CATAGGTTTCCTACGGCCGTTAGGCCTTTCTACACTATGACTTGTGTTGATAATCCTCTT 1380 ||| ||| ||||| ||| ||||||||||||||||| |||||||||| |||||||||||| Sbjct 1567 CATCGGTATCCTAAGGCAGTTAGGCCTTTCTACACAATGACTTGTGCCGATAATCCTCTT 1626 Query 1381 TACAGCAACTCCTTTGATGTCTTCATCAGAGGTGAGGAGATCATATCAGGAGCTCAACGT 1440 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1627 TACAGCAACTCTTTTGATGTCTTCATCAGAGGTGAGGAGATCATATCAGGAGCTCAACGT 1686 Query 1441 GTCCATATCCCAGAATTATTGGAGCAACGTGCGAGGGAGCACG-GG-ATTGATGTCAAGA 1498 ||||||||||||||| | |||||||||||||| ||| || | | || ||||||||||||| Sbjct 1687 GTCCATATCCCAGAAGTCTTGGAGCAACGTGC-AGG-AGAATGTGGCATTGATGTCAAGA 1744 Query 1499 CAATATCCACATACATCGATTCATTCAGGTATGGTGCGCCTCCACACGGTGGATTTGGAG 1558 |||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||| Sbjct 1745 CAATATCCACATACATTGATTCATTCAGGTACGGTGCGCCTCTACACGGTGGATTTGGAG 1804 Query 1559 CGGGGCTGGAGCGAGTGGTCATGCTTTTCTGTGGACTGAACAACATCCGGAAAACATCGC 1618 |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| | Sbjct 1805 TGGGGCTGGAGCGAGTGGTCATGCTTTTCTGTGCACTGAACAACATTCGGAAAACATCCC 1864 Query 1619 TCTTCCCTCGCGACCCTCAAAGGCTTGCACCCTAA 1653 |||||||||| ||||||||||||||| |||||||| Sbjct 1865 TCTTCCCTCGTGACCCTCAAAGGCTTTCACCCTAA 1899 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81676286715 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5