BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898355
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54170.1 | Symbols: ATFIP37, FIP37 | FKBP12 interacting prot... 1469 0.0
> AT3G54170.1 | Symbols: ATFIP37, FIP37 | FKBP12 interacting protein
37 | chr3:20056705-20059522 FORWARD LENGTH=1262
Length=1262
Score = 1469 bits (795), Expect = 0.0
Identities = 948/1017 (93%), Gaps = 30/1017 (3%)
Strand=Plus/Plus
Query 1 ATGGAGTTTTCCTTACAAGACGACGATTTTGGAGGAGATTATTCCGCTGCAAATGCCACC 60
||||||||||| | |||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 144 ATGGAGTTTTCATCACAAGACGACGATTTTGGAGGAGACGATTCCGCTGCTAATGCCACC 203
Query 61 AGGGCTTCAGGTAATAAAAGAAGCTTCGGTGATCTTGAAGACGATGAAGATGATATTTTC 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 AGGGCTTCAGGTAATAGAAGAAGCTTCGGTGATCTTGAAGACGATGAAGATGATATTTTC 263
Query 121 GGATCAAAAAAGGGTCGAACTAAAGTGGAGGAAGCTGCACCTGGTGTT-GCAACTGCGAT 179
||||| || | ||| || ||| | ||||||||| | ||||| |||
Sbjct 264 GGATC----AA----C-AAC---------GGTAGC-G--CCTGGTGTTAG-AACTGGGAT 301
Query 180 GATTTTGTCACTTCGA-GAGAGTCTTCAGAATTGTAAAGATGATCTTACTTCATGTCAAA 238
||||||||| || ||| || |||||| |||||||||||||||||||| ||||||||||||
Sbjct 302 GATTTTGTCTCTCCGAGGA-AGTCTTAAGAATTGTAAAGATGATCTTGCTTCATGTCAAA 360
Query 239 ATGAGCTTGAATCAGCGAAAACAGAGATTCAGAAGTGGAAATCAGCGTTTCAGAATGAGT 298
||||||| || ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 ATGAGCTCGAGTCAGCAAAAACAGAGATTCAGAAGTGGAAGTCAGCGTTTCAGAATGAGT 420
Query 299 CCTTTGTTCCCGCTGGGAAATCTCCTGAACCTAGATTTCTGATTGACTATATTCAAAACC 358
|||||||||||||||| |||||||||||||| |||||| ||||||| |||||||||||||
Sbjct 421 CCTTTGTTCCCGCTGGAAAATCTCCTGAACCAAGATTTTTGATTGATTATATTCAAAACC 480
Query 359 TAAAATCTTCTGAGAGATCTTTGAAAGAACAGCTAGAAATCGCAAAGAGAAAAGAAGCGT 418
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 TAAAATCTTCTGAGAAATCTTTGAAAGAACAGTTAGAAATCGCAAAGAGAAAAGAAGCGT 540
Query 419 CATGCATTGTACAATATGCAAAACGGGAACAGGAAATGGCAGAATTGAAGTCAGCTGTTC 478
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 541 CATGCATTGTACAATATGCGAAACGGGAACAAGAAATGGCAGAATTGAAGTCAGCTGTTC 600
Query 479 GCGATTTGAAATCTCAACTCAAGCCAGCGTCAATGCAGGCGAGGAGGTTGTTACTGGATC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCGATTTGAAATCTCAACTCAAGCCAGCGTCAATGCAGGCGAGGAGGTTGTTACTGGATC 660
Query 539 CAGCAATTCATGAGGAATTTTCACGTCTGAAGAATCTAGTTGAGGAAAAAGATAAGAAGA 598
||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 661 CAGCAATTCATGAAGAATTTTCACGTCTGAAGAATCTAGTAGAGGAAAAAGACAAGAAGA 720
Query 599 TCAAGGAACTCCAGGACAACATTTCAGCCGTTACTTTTACTCCTCAAAGCAAGAATGGAA 658
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 721 TCAAGGAACTCCAGGACAACATTGCAGCAGTTACTTTTACTCCTCAAAGCAAGAATGGAA 780
Query 659 AGATGCTTATGGCAAAGTGCAAAACCCTGCAAGAGGAAAATGAGGAGATTGGGCACCAGG 718
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 781 AGATGCTTATGGCAAAGTGCAGAACCCTGCAAGAGGAAAATGAGGAGATTGGGCACCAAG 840
Query 719 CTGCTGAAGGAAAGATTCATGAACTAGTAATAAAGCTTACAATGCAGAAGTCTCAAAACG 778
|||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 841 CTGCCGAAGGAAAGATTCATGAACTAGCAATAAAGCTTGCAATGCAGAAGTCTCAAAACG 900
Query 779 CAGAACTTAGAAGTCAATTTGAAGGACTATACAAACACATGGAGGAATTAACTAATGATG 838
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 901 CGGAACTTAGAAGTCAATTTGAAGGACTGTACAAACACATGGAGGAATTAACTAATGATG 960
Query 839 TTGAGAGATCAAATGAAACGGTGATAATATTGCaagagaaactggaagagaaagagaagg 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTGAGAGATCAAATGAAACGGTGATAATATTGCAAGAGAAACTGGAAGAGAAAGAGAAGG 1020
Query 899 agatagagagaataaagaaaggaatggaaaTTGTGTCTGATG-TAGTAGGTGACAAGAAA 957
||||||||||| ||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct 1021 AGATAGAGAGAGTAAAGAAAGGACTGGAAATTGTGTCTGA-GCTAGTAGGTGACAAGAAA 1079
Query 958 GATGAAGTTGATGAAATCGATGAAGATGCAAAAGAA-A--TTGCTGGTGGAGAATAG 1011
||||||||||||||||| |||||||||||||||||| | |||||||||||||||||
Sbjct 1080 GATGAAGTTGATGAAATTGATGAAGATGCAAAAGAAGAAATTGCTGGTGGAGAATAG 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5