BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg898379

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G54410.1 | Symbols:  | Protein of unknown function (DUF1163)...   383    6e-106


> AT3G54410.1 | Symbols:  | Protein of unknown function (DUF1163) 
| chr3:20144551-20145489 FORWARD LENGTH=939
Length=939

 Score =  383 bits (207),  Expect = 6e-106
 Identities = 285/322 (89%), Gaps = 8/322 (2%)
 Strand=Plus/Plus

Query  1    ATGTTACTCT-TGCTACATCATCTCCACAAAAGTAAGCTATTTATTTA-CAACAATCTCA  58
            |||||||||| |  ||| ||| ||||||||||||||||| ||||  ||  ||||| ||| 
Sbjct  368  ATGTTACTCTCT-TTACCTCACCTCCACAAAAGTAAGCTGTTTA-CTATTAACAACCTCC  425

Query  59   AATACCGCTTG-CCTCAGCTTCTTAAAGTTTCTGCGGTTGTCTCCGACGAAGATATTGGT  117
             ||||||| || ||||||||||||||||||||||  ||||||||||||||| | ||| ||
Sbjct  426  GATACCGC-TGTCCTCAGCTTCTTAAAGTTTCTGTTGTTGTCTCCGACGAAAACATTAGT  484

Query  118  TCGATTGGAACATGCAGTATGGAAGATGTCAAAGAGAGGAAGCAAGTAACGTTTGGATCA  177
            ||||||||||||| || |||||||||||||||||||| |||||||||||| |||||||  
Sbjct  485  TCGATTGGAACATACATTATGGAAGATGTCAAAGAGAAGAAGCAAGTAACTTTTGGATTG  544

Query  178  CAGTTTTCTCTTACCGATTGCAGAAAAAAGACGTCAGGAGTTATGAGTTATGCATGCCAT  237
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |
Sbjct  545  CAGTTTTCTCTTACCGATTGCAGAAAAAAGACGTTAGGAGTTATGAGTTATGCATGCTGT  604

Query  238  GAAGTGACCTTGAGGTTCGAACCCGGATCCGATATGAAGGCGTCTGTGTTTGGGAAGCAT  297
            | ||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct  605  GGAGTCACCTTGAGGTTCGAACCCGGATCTGAGATGAAGGCGTCTGTGTTTGGAAAGCAT  664

Query  298  CCAAGGTGCA-AGAATTTCTGA  318
            ||||||| || | |||||||||
Sbjct  665  CCAAGGTACACA-AATTTCTGA  685



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14778718206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5