BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898391
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54530.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1221 0.0
> AT3G54530.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G54520.1);
Has 159 Blast hits to 159 proteins in 50 species: Archae -
2; Bacteria - 26; Metazoa - 55; Fungi - 5; Plants - 20; Viruses
- 2; Other Eukaryotes - 49 (source: NCBI BLink). | chr3:20186145-20187585
REVERSE LENGTH=1075
Length=1075
Score = 1221 bits (661), Expect = 0.0
Identities = 864/958 (90%), Gaps = 29/958 (3%)
Strand=Plus/Plus
Query 5 AAGCCGATGGTCAGGAAACTTCTACTTCCAAAACAATATCCATCCCTGTTGGTATAGGAT 64
|||||||||||||||||||||||| || |||||||||||||||| | |||||||| ||||
Sbjct 90 AAGCCGATGGTCAGGAAACTTCTAATTTCAAAACAATATCCATCTCAGTTGGTATGGGAT 149
Query 65 GCAACTATAGTAAAACGAGTTCCGAGAAACTTTCCTGCAACGTAGTGTCGCCATGCCTTG 124
||||||||||||||| | | ||||||||||||||||||||| | || || ||||||| ||
Sbjct 150 GCAACTATAGTAAAAAGGGCTCCGAGAAACTTTCCTGCAACATGGTTTCACCATGCCCTG 209
Query 125 GCCCATTTGGGCGTTCATCATTTGCAGAAGCAAAGAAGCGATTGGAAAAGCTCGAGCGAG 184
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 210 GCTCATTTGGGCGTTCATCATTTGCAGAAGCAAAGAAGCGATTGGAAAAGCTCGAGCAAG 269
Query 185 ATTATCAACACACCTACAAGAAGTACACAGAACTACAATCAGACAGGTATAGGTACTACA 244
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 270 ATTATCAACACACCTACGAGAAGTACACAGAACTACAATCAGACAGGTATATGTACTACA 329
Query 245 TTG-TTTTACAACATCCAGGACATCACAGTCGCTGGGTTGGCTACTGTATCGTTCGCAGC 303
||| |||| |||| |||||||||||||||||||||||||||||||||||||| || || |
Sbjct 330 TTGCTTTT-CAACGTCCAGGACATCACAGTCGCTGGGTTGGCTACTGTATCGATCACATC 388
Query 304 AAAAATGTAGTGGAGCAACTGCAGAATGTTCTTGACAAGCTGAATACAGAAGAAGCATCA 363
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 GAAAATGTAGTAGAGCAACTGCAGAATGTTCTTGACAAGCTGAATACAGAAGAAGCATCA 448
Query 364 CAAAGAGGAAGAGAAACACCTACAAATGGCAAGCAATTCTTCTTGATGCACGGTCGTAAA 423
|||||||||||||||||||| ||||| || |||||||||||||||| ||||||| |||||
Sbjct 449 CAAAGAGGAAGAGAAACACCAACAAACGGTAAGCAATTCTTCTTGACGCACGGTTGTAAA 508
Query 424 AGCTTGGCACAAGAAAAGATGGTACTGCAGCAGCTGAAAGCAGAAAACAAAGAGCAATAC 483
||||||||||||||||| |||||||| ||| ||||||||||||||| |||||||||||||
Sbjct 509 AGCTTGGCACAAGAAAATATGGTACTTCAGAAGCTGAAAGCAGAAACCAAAGAGCAATAC 568
Query 484 ACTGATGGCCTGTGCCAAGAAACAATTGACGTCAAAAGAATTAAT-GAGGAGTTCAGGTG 542
|||||||| ||||| |||||||||||||| ||||||||||||||| | |||||||| ||
Sbjct 569 ACTGATGGTCTGTGTCAAGAAACAATTGATGTCAAAAGAATTAATTG-GGAGTTCATTTG 627
Query 543 CATTCAAAGAATAGTTCCACGGACTAGCAACAAGAAATCTATACATGATCTGTTGAGGAG 602
|||||||||||||||||||| || |||||||||||||||| |||| ||||||||||||||
Sbjct 628 CATTCAAAGAATAGTTCCACAGAATAGCAACAAGAAATCTGTACACGATCTGTTGAGGAG 687
Query 603 AGTTAAAGAGATAAAGAAGCTGACACAAAAGGCTATTTCCAATGGTGCACTAATGGGCAA 662
|||||| |||| | ||||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct 688 AGTTAATGAGACACAGAAGTTGACAGAAAAAGCTATTTCCAATGGTGCACTAATGGGCAA 747
Query 663 CCACACGAGTCTGGACAATATGAAAAATTCTACAAGTGTCTTAATAAAG-TT-TGA-GAA 719
|| ||||||||||||||||||||||||||||||||||| |||||||||| || ||| |||
Sbjct 748 CCTCACGAGTCTGGACAATATGAAAAATTCTACAAGTGACTTAATAAAGATTGTGACGAA 807
Query 720 AG-A----GA-A-T-A-AG---GAG----T----T-AGAGAATATTTTGCAAGACAGAGT 758
| | || | | | || ||| | | |||||||||||||||||||||| |
Sbjct 808 TGTACACAGAGAGTTAGAGAAAGAGAAAATAGAGTTAGAGAATATTTTGCAAGACAGAAT 867
Query 759 ACATTTTGCAAgaaaaaatgaaaaaggatacaccgaaaaaatgagggttctatgggaaaa 818
|||||||||||||||||||||||||||||||| |||||||| |||||| || |||||||
Sbjct 868 ACATTTTGCAAGAAAAAATGAAAAAGGATACATAGAAAAAATAAGGGTTTTACGGGAAAA 927
Query 819 atgtaaatgCATAGGTGAGAAACGTGATGCAGAAAAGAAATTTTTGCTCGATTTGAAGAA 878
|||||||||||||| ||||| |||||||||||||||||||| |||||||||||| ||||
Sbjct 928 ATGTAAATGCATAGTTGAGAGACGTGATGCAGAAAAGAAATACTTGCTCGATTTGGAGAA 987
Query 879 AAGTTTCAGGGAGATGCACAAAACTGCTTCACAAAGAAAAGGCTGCCGAAAAGGGTAA 936
|| ||||||||| ||| |||||||||||||||| |||||||||||||||||||| |||
Sbjct 988 AAATTTCAGGGATATGAACAAAACTGCTTCACAGAGAAAAGGCTGCCGAAAAGG-TAA 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45763307917
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5