BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg898391 Length=936 Score E Sequences producing significant alignments: (Bits) Value AT3G54530.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1221 0.0 > AT3G54530.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54520.1); Has 159 Blast hits to 159 proteins in 50 species: Archae - 2; Bacteria - 26; Metazoa - 55; Fungi - 5; Plants - 20; Viruses - 2; Other Eukaryotes - 49 (source: NCBI BLink). | chr3:20186145-20187585 REVERSE LENGTH=1075 Length=1075 Score = 1221 bits (661), Expect = 0.0 Identities = 864/958 (90%), Gaps = 29/958 (3%) Strand=Plus/Plus Query 5 AAGCCGATGGTCAGGAAACTTCTACTTCCAAAACAATATCCATCCCTGTTGGTATAGGAT 64 |||||||||||||||||||||||| || |||||||||||||||| | |||||||| |||| Sbjct 90 AAGCCGATGGTCAGGAAACTTCTAATTTCAAAACAATATCCATCTCAGTTGGTATGGGAT 149 Query 65 GCAACTATAGTAAAACGAGTTCCGAGAAACTTTCCTGCAACGTAGTGTCGCCATGCCTTG 124 ||||||||||||||| | | ||||||||||||||||||||| | || || ||||||| || Sbjct 150 GCAACTATAGTAAAAAGGGCTCCGAGAAACTTTCCTGCAACATGGTTTCACCATGCCCTG 209 Query 125 GCCCATTTGGGCGTTCATCATTTGCAGAAGCAAAGAAGCGATTGGAAAAGCTCGAGCGAG 184 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 210 GCTCATTTGGGCGTTCATCATTTGCAGAAGCAAAGAAGCGATTGGAAAAGCTCGAGCAAG 269 Query 185 ATTATCAACACACCTACAAGAAGTACACAGAACTACAATCAGACAGGTATAGGTACTACA 244 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 270 ATTATCAACACACCTACGAGAAGTACACAGAACTACAATCAGACAGGTATATGTACTACA 329 Query 245 TTG-TTTTACAACATCCAGGACATCACAGTCGCTGGGTTGGCTACTGTATCGTTCGCAGC 303 ||| |||| |||| |||||||||||||||||||||||||||||||||||||| || || | Sbjct 330 TTGCTTTT-CAACGTCCAGGACATCACAGTCGCTGGGTTGGCTACTGTATCGATCACATC 388 Query 304 AAAAATGTAGTGGAGCAACTGCAGAATGTTCTTGACAAGCTGAATACAGAAGAAGCATCA 363 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 389 GAAAATGTAGTAGAGCAACTGCAGAATGTTCTTGACAAGCTGAATACAGAAGAAGCATCA 448 Query 364 CAAAGAGGAAGAGAAACACCTACAAATGGCAAGCAATTCTTCTTGATGCACGGTCGTAAA 423 |||||||||||||||||||| ||||| || |||||||||||||||| ||||||| ||||| Sbjct 449 CAAAGAGGAAGAGAAACACCAACAAACGGTAAGCAATTCTTCTTGACGCACGGTTGTAAA 508 Query 424 AGCTTGGCACAAGAAAAGATGGTACTGCAGCAGCTGAAAGCAGAAAACAAAGAGCAATAC 483 ||||||||||||||||| |||||||| ||| ||||||||||||||| ||||||||||||| Sbjct 509 AGCTTGGCACAAGAAAATATGGTACTTCAGAAGCTGAAAGCAGAAACCAAAGAGCAATAC 568 Query 484 ACTGATGGCCTGTGCCAAGAAACAATTGACGTCAAAAGAATTAAT-GAGGAGTTCAGGTG 542 |||||||| ||||| |||||||||||||| ||||||||||||||| | |||||||| || Sbjct 569 ACTGATGGTCTGTGTCAAGAAACAATTGATGTCAAAAGAATTAATTG-GGAGTTCATTTG 627 Query 543 CATTCAAAGAATAGTTCCACGGACTAGCAACAAGAAATCTATACATGATCTGTTGAGGAG 602 |||||||||||||||||||| || |||||||||||||||| |||| |||||||||||||| Sbjct 628 CATTCAAAGAATAGTTCCACAGAATAGCAACAAGAAATCTGTACACGATCTGTTGAGGAG 687 Query 603 AGTTAAAGAGATAAAGAAGCTGACACAAAAGGCTATTTCCAATGGTGCACTAATGGGCAA 662 |||||| |||| | ||||| ||||| |||| ||||||||||||||||||||||||||||| Sbjct 688 AGTTAATGAGACACAGAAGTTGACAGAAAAAGCTATTTCCAATGGTGCACTAATGGGCAA 747 Query 663 CCACACGAGTCTGGACAATATGAAAAATTCTACAAGTGTCTTAATAAAG-TT-TGA-GAA 719 || ||||||||||||||||||||||||||||||||||| |||||||||| || ||| ||| Sbjct 748 CCTCACGAGTCTGGACAATATGAAAAATTCTACAAGTGACTTAATAAAGATTGTGACGAA 807 Query 720 AG-A----GA-A-T-A-AG---GAG----T----T-AGAGAATATTTTGCAAGACAGAGT 758 | | || | | | || ||| | | |||||||||||||||||||||| | Sbjct 808 TGTACACAGAGAGTTAGAGAAAGAGAAAATAGAGTTAGAGAATATTTTGCAAGACAGAAT 867 Query 759 ACATTTTGCAAgaaaaaatgaaaaaggatacaccgaaaaaatgagggttctatgggaaaa 818 |||||||||||||||||||||||||||||||| |||||||| |||||| || ||||||| Sbjct 868 ACATTTTGCAAGAAAAAATGAAAAAGGATACATAGAAAAAATAAGGGTTTTACGGGAAAA 927 Query 819 atgtaaatgCATAGGTGAGAAACGTGATGCAGAAAAGAAATTTTTGCTCGATTTGAAGAA 878 |||||||||||||| ||||| |||||||||||||||||||| |||||||||||| |||| Sbjct 928 ATGTAAATGCATAGTTGAGAGACGTGATGCAGAAAAGAAATACTTGCTCGATTTGGAGAA 987 Query 879 AAGTTTCAGGGAGATGCACAAAACTGCTTCACAAAGAAAAGGCTGCCGAAAAGGGTAA 936 || ||||||||| ||| |||||||||||||||| |||||||||||||||||||| ||| Sbjct 988 AAATTTCAGGGATATGAACAAAACTGCTTCACAGAGAAAAGGCTGCCGAAAAGG-TAA 1044 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45763307917 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5