BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg898394 Length=864 Score E Sequences producing significant alignments: (Bits) Value AT3G54550.1 | Symbols: | Protein of unknown function (DUF506) ... 1173 0.0 > AT3G54550.1 | Symbols: | Protein of unknown function (DUF506) | chr3:20193627-20194663 REVERSE LENGTH=867 Length=867 Score = 1173 bits (635), Expect = 0.0 Identities = 786/858 (92%), Gaps = 13/858 (2%) Strand=Plus/Plus Query 1 ATGCCTTTCCGTTCTAAAGTCCAGCCTATCAACATCAATGGTGTAGCGATGAGACAAGCG 60 |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1 ATGCCTTTCCGTTCCAAAGTCCAGCCTATCAACATCAATGGTGTAGGGATGAGACAAGCG 60 Query 61 CCGAGATCACGACTGAAGCGGCTTTTTGAACGTCAGTTCTCTCTGAAGAACTTAGCCGGT 120 |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 61 CCGAGATCTCGACTGAAGCGGCTTTTTGAACGTCCGTTCTCTCTGAAGAACTTAGCCGGT 120 Query 121 GTAGATTCATCGCTTTCTAGAAG-CAA-TCCGGAAGAATTCGAACCTAGCTCGGTCTGTT 178 |||||||||||||||||||| || || ||| |||||| ||||||| ||||||||||||| Sbjct 121 GTAGATTCATCGCTTTCTAG-AGAAAATTCC-GAAGAAATCGAACCGAGCTCGGTCTGTT 178 Query 179 TGAGGAGGATGGTTCAGAACTATATCGAGGATCCAGACAGTGAGACACAATCACAGTGCA 238 ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 179 TGAGGAGGATGGTGCAGAACTATATCGAGGATCCAGACAGTGAGAAACAATCAAAGTGCA 238 Query 239 TTGTTCGTAACC-ACTTCAACTGCTTCAGTGGAAGTGGCACTGATAGCTCCGACGA-G-- 294 |||||||||||| | | ||||||||||||||||||||| ||||||||||| ||||| | Sbjct 239 TTGTTCGTAACCGA-TGCAACTGCTTCAGTGGAAGTGGTACTGATAGCTCTGACGAGGAC 297 Query 295 GACGAAGAATCTTCTTCTTCCAGCAGAGTTCTTCGAAGCCTCAAGAGTCTGTTACTTTGT 354 |||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| Sbjct 298 GACGAAGAATCTTCTTCTTCTAGAAGAGTTCTTCGAAGCCTCAAGAGTCTTTTACTTTGT 357 Query 355 GCTAACGTCTCTGAGAGTGATCTTGAGAC-AAAAGCCAGCGAGATTGTCAAGAGAGAGGT 413 || ||||| |||||| ||||||| ||||| |||| | | |||||| || |||||||||| Sbjct 358 GCGAACGTATCTGAGCGTGATCTCGAGACGAAAA-CAACCGAGATCGTTGAGAGAGAGGT 416 Query 414 TGAAGATAAGTCCAGACTGAAGAATGTTGCCGATGAACTGGTGGCTTTAGGCTATGATGC 473 ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 417 TGAAGATAAGTCCAGACTGAAAAATGTTGTTGATGAACTGGTGGCTTTAGGCTATGATGC 476 Query 474 GGCAATATGCAAATCTCGCTGGGAGAAATC-AAAATTGAAATCGTATCGTGTTCCTGCTG 532 ||||||||||||||||||||||||||||| |||| |||||||||| ||||||| |||| Sbjct 477 AGCAATATGCAAATCTCGCTGGGAGAAATCGAAAA-CGAAATCGTATTGTGTTCCCGCTG 535 Query 533 GGGACTATGAGTACTTGGATGTTAACATCGGAGGAGAAAGAGTGCTCATCGACATTGATT 592 ||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 536 GGGACTATGAGTATTTGGATGTTAACATTGGAGGAGAAAGAGTGCTCATCGACTTTGATT 595 Query 593 TCCAATCGAAGTTTGAGATTGCTAAACCAACCAAGACTTACGAGTCGATATCGAAGACAT 652 ||||||||||||| || ||||||| | | | ||||||||||||||||||||||||||| Sbjct 596 TCCAATCGAAGTTCGAAATTGCTAGATCGAGTGAGACTTACGAGTCGATATCGAAGACAT 655 Query 653 TGCCTAACATTTTTGTTGGACAAGTTGAGAGGTTAAAGAAAGTTGTGGTGTTTGTGTCTA 712 ||||| || | ||||||||||||||||| ||||| | ||| |||||||| ||| |||||| Sbjct 656 TGCCTTACGTCTTTGTTGGACAAGTTGACAGGTTGACGAAGGTTGTGGTATTTTTGTCTA 715 Query 713 AAGCTGCAAAGAAGAGCTTCAAGAAGAAAGGGCTATTTATGCCACCATGGAGGAGAGCAG 772 |||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 716 AAGCCGCAAAGACGAGCTTTAGGAAGAAAGGGCTATTTATGCCACCATGGAGGAGAGCAG 775 Query 773 AGTATTTGTTAACCAAATGGGTGTCTCAATATGATCGTGCTAAGCAAACTCAAAGAGAAA 832 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 776 AGTATTTGTTAACCAAATGGGTGTCTCAATATGATCGTACTAAGCAAACTCAAGGAGAAA 835 Query 833 CCAGTGGAGAAGCTGGTG 850 |||||||| ||||||||| Sbjct 836 CCAGTGGACAAGCTGGTG 853 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42146449333 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5