BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898394
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54550.1 | Symbols: | Protein of unknown function (DUF506) ... 1173 0.0
> AT3G54550.1 | Symbols: | Protein of unknown function (DUF506)
| chr3:20193627-20194663 REVERSE LENGTH=867
Length=867
Score = 1173 bits (635), Expect = 0.0
Identities = 786/858 (92%), Gaps = 13/858 (2%)
Strand=Plus/Plus
Query 1 ATGCCTTTCCGTTCTAAAGTCCAGCCTATCAACATCAATGGTGTAGCGATGAGACAAGCG 60
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGCCTTTCCGTTCCAAAGTCCAGCCTATCAACATCAATGGTGTAGGGATGAGACAAGCG 60
Query 61 CCGAGATCACGACTGAAGCGGCTTTTTGAACGTCAGTTCTCTCTGAAGAACTTAGCCGGT 120
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CCGAGATCTCGACTGAAGCGGCTTTTTGAACGTCCGTTCTCTCTGAAGAACTTAGCCGGT 120
Query 121 GTAGATTCATCGCTTTCTAGAAG-CAA-TCCGGAAGAATTCGAACCTAGCTCGGTCTGTT 178
|||||||||||||||||||| || || ||| |||||| ||||||| |||||||||||||
Sbjct 121 GTAGATTCATCGCTTTCTAG-AGAAAATTCC-GAAGAAATCGAACCGAGCTCGGTCTGTT 178
Query 179 TGAGGAGGATGGTTCAGAACTATATCGAGGATCCAGACAGTGAGACACAATCACAGTGCA 238
||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 179 TGAGGAGGATGGTGCAGAACTATATCGAGGATCCAGACAGTGAGAAACAATCAAAGTGCA 238
Query 239 TTGTTCGTAACC-ACTTCAACTGCTTCAGTGGAAGTGGCACTGATAGCTCCGACGA-G-- 294
|||||||||||| | | ||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 239 TTGTTCGTAACCGA-TGCAACTGCTTCAGTGGAAGTGGTACTGATAGCTCTGACGAGGAC 297
Query 295 GACGAAGAATCTTCTTCTTCCAGCAGAGTTCTTCGAAGCCTCAAGAGTCTGTTACTTTGT 354
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 298 GACGAAGAATCTTCTTCTTCTAGAAGAGTTCTTCGAAGCCTCAAGAGTCTTTTACTTTGT 357
Query 355 GCTAACGTCTCTGAGAGTGATCTTGAGAC-AAAAGCCAGCGAGATTGTCAAGAGAGAGGT 413
|| ||||| |||||| ||||||| ||||| |||| | | |||||| || ||||||||||
Sbjct 358 GCGAACGTATCTGAGCGTGATCTCGAGACGAAAA-CAACCGAGATCGTTGAGAGAGAGGT 416
Query 414 TGAAGATAAGTCCAGACTGAAGAATGTTGCCGATGAACTGGTGGCTTTAGGCTATGATGC 473
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 417 TGAAGATAAGTCCAGACTGAAAAATGTTGTTGATGAACTGGTGGCTTTAGGCTATGATGC 476
Query 474 GGCAATATGCAAATCTCGCTGGGAGAAATC-AAAATTGAAATCGTATCGTGTTCCTGCTG 532
||||||||||||||||||||||||||||| |||| |||||||||| ||||||| ||||
Sbjct 477 AGCAATATGCAAATCTCGCTGGGAGAAATCGAAAA-CGAAATCGTATTGTGTTCCCGCTG 535
Query 533 GGGACTATGAGTACTTGGATGTTAACATCGGAGGAGAAAGAGTGCTCATCGACATTGATT 592
||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 536 GGGACTATGAGTATTTGGATGTTAACATTGGAGGAGAAAGAGTGCTCATCGACTTTGATT 595
Query 593 TCCAATCGAAGTTTGAGATTGCTAAACCAACCAAGACTTACGAGTCGATATCGAAGACAT 652
||||||||||||| || ||||||| | | | |||||||||||||||||||||||||||
Sbjct 596 TCCAATCGAAGTTCGAAATTGCTAGATCGAGTGAGACTTACGAGTCGATATCGAAGACAT 655
Query 653 TGCCTAACATTTTTGTTGGACAAGTTGAGAGGTTAAAGAAAGTTGTGGTGTTTGTGTCTA 712
||||| || | ||||||||||||||||| ||||| | ||| |||||||| ||| ||||||
Sbjct 656 TGCCTTACGTCTTTGTTGGACAAGTTGACAGGTTGACGAAGGTTGTGGTATTTTTGTCTA 715
Query 713 AAGCTGCAAAGAAGAGCTTCAAGAAGAAAGGGCTATTTATGCCACCATGGAGGAGAGCAG 772
|||| ||||||| |||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 716 AAGCCGCAAAGACGAGCTTTAGGAAGAAAGGGCTATTTATGCCACCATGGAGGAGAGCAG 775
Query 773 AGTATTTGTTAACCAAATGGGTGTCTCAATATGATCGTGCTAAGCAAACTCAAAGAGAAA 832
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 776 AGTATTTGTTAACCAAATGGGTGTCTCAATATGATCGTACTAAGCAAACTCAAGGAGAAA 835
Query 833 CCAGTGGAGAAGCTGGTG 850
|||||||| |||||||||
Sbjct 836 CCAGTGGACAAGCTGGTG 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5