BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg898422

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G54840.1 | Symbols: ARA6, ATRABF1, ARA-6, ATRAB5C | Ras-rela...  1020    0.0  


> AT3G54840.1 | Symbols: ARA6, ATRABF1, ARA-6, ATRAB5C | Ras-related 
small GTP-binding family protein | chr3:20318412-20321001 
FORWARD LENGTH=1013
Length=1013

 Score = 1020 bits (552),  Expect = 0.0
 Identities = 590/609 (97%), Gaps = 0/609 (0%)
 Strand=Plus/Plus

Query  1    ATGGGATGTGCTACTTCTCTTCCAGATAGGAACTCTGGAGCTTTAAGTGGTCTTAGCAAT  60
            |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  186  ATGGGATGTGCTTCTTCTCTTCCAGATAGGAACTCTGGAACTTTAAGTGGTCTTAGCAAT  245

Query  61   TCAGAGAATGCTGTTCCAGCTGATGCTAAAAATCTACGTGTGAAGTTAGTTCTATTAGGA  120
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  246  TCAGAGAATGCTGTTCCAGCTGATGCCAAAAATCTACGTGTGAAGTTAGTTCTATTAGGA  305

Query  121  GATTCTGGTGTTGGTAAAAGCTGTATTGTCCTTCGATTTGTTCGTGGTCAGTTTGACGCT  180
            || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct  306  GACTCTGGTGTTGGTAAAAGTTGTATTGTCCTTCGATTTGTACGTGGTCAGTTTGACGCT  365

Query  181  ACATCTAAGGTAACTGTTGGAGCCTCGTTCTTGTCCCAAACAATAGCATTGCAAGACTCT  240
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  366  ACATCTAAGGTAACTGTTGGAGCCTCGTTCTTGTCCCAAACTATAGCATTGCAAGACTCT  425

Query  241  ACCACAGTGAAGTTTGAAATATGGGATACAGCAGGACAAGAGAGGTATTCTGCTCTTGCA  300
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  426  ACCACAGTGAAGTTTGAAATATGGGATACAGCAGGACAGGAGAGGTATTCTGCTCTTGCA  485

Query  301  CCACTATACTACCGTGGAGCTGGAGTTGCTGTTATTGTGTATGATATAACAAGTCCTGAA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  486  CCACTATACTACCGTGGAGCTGGAGTTGCTGTTATTGTGTATGATATAACAAGCCCTGAA  545

Query  361  TCGTTCAAGAAAGCTCAGTATTGGGTTAAGGAACTGCAAAAGCATGGAAGCCCAGATATT  420
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  546  TCGTTCAAGAAAGCACAGTATTGGGTTAAGGAACTGCAAAAGCATGGAAGCCCAGATATT  605

Query  421  GTTATGGCTCTGGTTGGTAACAAAGCTGATCTACATGAGAAAAGAGAAGTACCAACCGAG  480
            |||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct  606  GTTATGGCTCTGGTTGGTAACAAAGCTGATCTACATGAAAAAAGAGAAGTACCTACTGAG  665

Query  481  GATGGGATAGAGCTTGCAGAGAAGAACGGCATGTTCTTTATTGAGACGTCAGCCAAAACA  540
            ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct  666  GATGGAATGGAGCTTGCAGAGAAGAACGGCATGTTCTTCATTGAGACGTCAGCCAAGACA  725

Query  541  GCCGATAACATAAATCAACTGTTTGAGGAAATCGGCAAGAGGCTACCTCGTCCTGCTCCT  600
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  726  GCCGATAACATAAATCAACTGTTTGAGGAAATTGGCAAGAGGCTACCTCGTCCTGCTCCT  785

Query  601  GCGTCATGA  609
             ||||||||
Sbjct  786  TCGTCATGA  794



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29336741848


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5