BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898458
Length=1902
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55220.1 | Symbols: | Cleavage and polyadenylation specific... 3282 0.0
AT3G55200.1 | Symbols: | Cleavage and polyadenylation specific... 3277 0.0
> AT3G55220.1 | Symbols: | Cleavage and polyadenylation specificity
factor (CPSF) A subunit protein | chr3:20466921-20470944
REVERSE LENGTH=3840
Length=3840
Score = 3282 bits (1777), Expect = 0.0
Identities = 1856/1894 (98%), Gaps = 5/1894 (0%)
Strand=Plus/Plus
Query 12 GTGGCTTG-CT-GACATTG-CCCTGTTCC-GAAGGAAGACAAAGGTCTCGC-TTCTTGCT 66
|||||||| || ||||||| ||||||||| ||||||||| ||||||||||| ||||||||
Sbjct 1750 GTGGCTTGCCTGGACATTGCCCCTGTTCCTGAAGGAAGAAAAAGGTCTCGCTTTCTTGCT 1809
Query 67 GTGGGATCTTACGATAATACCGTGCGCATTCTATCTTTGGATCCTGACGACTGTCTGCAG 126
||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1810 GTGGGATCTTATGATAATACTGTGCGCATTCTATCTCTGGATCCTGACGACTGTCTGCAG 1869
Query 127 ATTCTCAGCGTGCAAAGTGTCTCTTCGGCTCCGGAGTCTCTGCTATTCCTCGAAGTTCAG 186
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1870 ATTCTCAGCGTGCAAAGTGTCTCTTCAGCTCCGGAGTCTCTGCTATTCCTCGAAGTTCAG 1929
Query 187 GCATCGATTGGTGGAGAGGATGGTGCTGATCACCCGGCTAATCTCTTCCTCAATTCTGGT 246
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1930 GCATCGATTGGTGGAGATGATGGTGCTGATCACCCGGCAAATCTCTTCCTCAATTCTGGG 1989
Query 247 CTGCAGAATGGTGTTCTTTTCAGAACGGTGGTGGACATGGTGACTGGTCAGCTTTCGGAT 306
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1990 CTGCAGAATGGTGTTCTTTTCAGAACTGTGGTGGACATGGTGACTGGTCAGCTTTCGGAT 2049
Query 307 TCTCGCTCCCGGTTCTTGGGGCTGAAGCCTCCCAAGCTATTCTCCATTTCTGTGAGAGGC 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2050 TCTCGCTCCCGGTTCTTGGGGCTGAAGCCTCCCAAGCTATTCTCCATTTCTGTGAGAGGC 2109
Query 367 CGGTCTGCAATGCTGTGTTTGTCTAGCCGACCTTGGCTTGGTTATATTCACCGGGGACAC 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2110 CGGTCTGCAATGCTGTGTTTGTCTAGCCGACCTTGGCTTGGTTATATTCACCGGGGACAC 2169
Query 427 TTCCACTTGACGCCTCTGTCTTATGAGACTTTGGAATTTGCTGCCCCCTTTTCATCTGAT 486
||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 2170 TTCCATTTGACGCCTCTGTCTTACGAGACTCTGGAATTTGCTGCCCCCTTTTCATCTGAT 2229
Query 487 CAGTGCGCTGAAGGTGTTGTCTCTGTCGCAGGGGATGCTCTGAGAATTTTCATGATTGAT 546
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 2230 CAGTGCGCTGAAGGTGTTGTCTCTGTCGCTGGGGATGCTCTGAGAATTTTTATGATTGAT 2289
Query 547 CGTCTTGGTGAAACGTTCAACGAAACAGTGGTCCCTCTGAGGTACACGCCTAGAAAGTTT 606
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2290 CGTCTTGGTGAAACATTCAACGAAACAGTGGTCCCTCTGAGGTACACGCCTAGAAAGTTT 2349
Query 607 GTTCTCCAACCCAAGCGGAAGTTGTTGGTTATTATCGAGAGTGACCAGGGAGCATTCACC 666
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2350 GTTCTCCATCCCAAGCGGAAGTTGTTGGTTATTATCGAGAGTGACCAGGGAGCATTCACC 2409
Query 667 GCAGAAGAGCGTGAAGCTGCAAGAAAGGAGTGCTTCGAGGCTGGTGGAGTGGGAGAAAAT 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2410 GCAGAAGAGCGTGAAGCTGCAAGAAAGGAGTGCTTCGAGGCTGGTGGAGTGGGAGAAAAT 2469
Query 727 GGTAATGGCAATGCAGATCAGATGGAGAATGGTGCGGATGATGAAGATAAGGAAGACCCG 786
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2470 GGCAATGGCAATGCAGATCAGATGGAGAATGGTGCGGATGATGAAGATAAGGAAGACCCG 2529
Query 787 CTTTCTGATGAGCAGTACGGTTATCCAAAAGCAGAGTCTGAAAAGTGGGTTTCTTGCATC 846
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2530 CTTTCTGATGAGCAGTACGGTTATCCAAAAGCAGAGTCTGAAAAGTGGGTCTCTTGCATC 2589
Query 847 AGAGTTCTTGATCCCAAGACAGCTACGACAACTTGTCTCCTGGAACTTCAAGACAACGAA 906
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2590 AGAGTTCTTGATCCCAAGACAGCTACGACAACTTGTCTCCTGGAACTTCAGGACAACGAA 2649
Query 907 GCTGCATACAGTGTCTGTACGGTGAATTTCCATGATAAAGAGTATGGTACATTGTTGGCT 966
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2650 GCTGCATACAGTGTCTGTACGGTGAATTTCCATGATAAAGAGTATGGTACACTGTTGGCT 2709
Query 967 GTTGGTACAGTCAAAGGGATGCAGTTCTGGCCCAAAAAGAATCTAGTGGCTGGGTTCATA 1026
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2710 GTTGGTACGGTCAAAGGGATGCAGTTCTGGCCCAAGAAGAATCTAGTGGCTGGGTTCATA 2769
Query 1027 CATATTTATAGGTTTGTGGAGGAAGGGAAATCTCTTGAGCTTCTTCATAAGACGCAAGTA 1086
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2770 CATATTTATAGGTTTGTGGAGGATGGGAAATCTCTTGAGCTTCTTCATAAGACGCAAGTA 2829
Query 1087 GAAGGTGTTCCTCTTGCTCTGTGCCAGTTCCAAGGAAGACTGCTGGCAGGGATCGGACCT 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2830 GAAGGTGTTCCTCTTGCTCTGTGCCAGTTCCAAGGAAGACTGCTGGCAGGGATCGGACCT 2889
Query 1147 GTCCTCAGATTGTATGATTTGGGGAAAAAGAGACTGCTTAGGAAATGTGAAAACAAGCTC 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2890 GTCCTCAGATTGTATGATTTGGGGAAAAAGAGACTGCTTAGGAAATGTGAAAACAAGCTC 2949
Query 1207 TTTCCAAACACCATTATCTCTATCCAAACTTACCGTGACCGTATATACGTTGGTGACATT 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2950 TTTCCAAACACCATTATCTCTATCCAAACTTACCGTGACCGTATATACGTTGGTGACATT 3009
Query 1267 CAGGAGTCTTTCCATTACTGCAAGTACAGGCGCGACGAGAATCAGCTATACATATTTGCG 1326
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3010 CAGGAGTCTTTCCATTACTGCAAGTACAGGCGCGACGAGAATCAGCTGTACATATTTGCG 3069
Query 1327 GATGACTGCGTGCCGAGGTGGCTGACAGCATCGCACCATGTGGATTTCGATACCATGGCA 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3070 GATGACTGCGTGCCGAGGTGGCTGACAGCATCGCACCATGTGGATTTCGATACCATGGCA 3129
Query 1387 GGTGCAGATAAGTTTGGGAATGTGTATTTTGTGCGGTTGCCTCAGGATCTGTCTGAGGAG 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3130 GGTGCAGATAAGTTTGGGAATGTGTATTTTGTGCGGTTGCCTCAGGATCTGTCGGAGGAG 3189
Query 1447 ATAGAAGAAGACCCGACAGGCGGGAAGATAAAGTGGGAGCAAGGAAAGCTGAATGGAGCA 1506
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3190 ATAGAAGAAGACCCGACTGGCGGGAAGATCAAGTGGGAGCAAGGAAAGCTGAATGGAGCA 3249
Query 1507 CCGAACAAAGTGGATGAGATAGTACAGTTCCATGTTGGGGACGTAGTGACGTGCTTGCAG 1566
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3250 CCGAACAAAGTGGATGAGATAGTACAGTTCCATGTTGGGGACGTTGTGACGTGCTTGCAG 3309
Query 1567 AAAGCTTCGATGATCCCAGGTGGATCGGAATCCATAATGTATGGAACAGTGATGGGTAGC 1626
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3310 AAAGCTTCGATGATCCCAGGTGGATCGGAATCGATAATGTATGGAACAGTGATGGGTAGC 3369
Query 1627 ATAGGGGCATTACATGCTTTCACATCGCGTGATGATGTGGATTTCTTCTCTCATCTGGAG 1686
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3370 ATAGGGGCATTACATGCTTTCACATCCCGTGATGATGTGGATTTCTTCTCTCATCTGGAG 3429
Query 1687 ATGCACATGAGGCAGGAGTATCCTCCTCTCTGCGGGAGAGACCACATGGCTTACAGATCT 1746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3430 ATGCACATGAGGCAGGAGTATCCTCCTCTCTGCGGGAGAGACCACATGGCTTACAGATCT 3489
Query 1747 GCATATTTTCCGGTCAAGGACGTGATAGATGGAGATCTGTGTGAGCAGTTCCCGACACTC 1806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3490 GCATATTTTCCGGTCAAGGACGTGATAGATGGAGATCTGTGTGAGCAGTTCCCGACACTC 3549
Query 1807 CCAATGGACTTGCAGAGGAAAATAGCAGACGAGTTGGATCGAACACCTGCGGAGATTCTG 1866
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 3550 CCAATGGACTTGCAGAGGAAAATAGCAGACGAGCTGGATAGAACACCTGCGGAGATTCTG 3609
Query 1867 AAGAAGCTCGAAGACGCAAGGAATAAGATCATTT 1900
||||||||||||||||||||||| ||||||||||
Sbjct 3610 AAGAAGCTCGAAGACGCAAGGAACAAGATCATTT 3643
> AT3G55200.1 | Symbols: | Cleavage and polyadenylation specificity
factor (CPSF) A subunit protein | chr3:20460533-20464556
FORWARD LENGTH=3840
Length=3840
Score = 3277 bits (1774), Expect = 0.0
Identities = 1855/1894 (98%), Gaps = 5/1894 (0%)
Strand=Plus/Plus
Query 12 GTGGCTTG-CT-GACATTG-CCCTGTTCC-GAAGGAAGACAAAGGTCTCGC-TTCTTGCT 66
|||||||| || ||||||| ||||||||| ||||||||| ||||||||||| ||||||||
Sbjct 1750 GTGGCTTGCCTGGACATTGCCCCTGTTCCTGAAGGAAGAAAAAGGTCTCGCTTTCTTGCT 1809
Query 67 GTGGGATCTTACGATAATACCGTGCGCATTCTATCTTTGGATCCTGACGACTGTCTGCAG 126
||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1810 GTGGGATCTTATGATAATACTGTGCGCATTCTATCTCTGGATCCTGACGACTGTCTGCAG 1869
Query 127 ATTCTCAGCGTGCAAAGTGTCTCTTCGGCTCCGGAGTCTCTGCTATTCCTCGAAGTTCAG 186
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1870 ATTCTCAGCGTGCAAAGTGTCTCTTCAGCTCCGGAGTCTCTGCTATTCCTCGAAGTTCAG 1929
Query 187 GCATCGATTGGTGGAGAGGATGGTGCTGATCACCCGGCTAATCTCTTCCTCAATTCTGGT 246
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1930 GCATCGATTGGTGGAGATGATGGTGCTGATCACCCGGCAAATCTCTTCCTCAATTCTGGG 1989
Query 247 CTGCAGAATGGTGTTCTTTTCAGAACGGTGGTGGACATGGTGACTGGTCAGCTTTCGGAT 306
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1990 CTGCAGAATGGTGTTCTTTTCAGAACTGTGGTGGACATGGTGACTGGTCAGCTTTCGGAT 2049
Query 307 TCTCGCTCCCGGTTCTTGGGGCTGAAGCCTCCCAAGCTATTCTCCATTTCTGTGAGAGGC 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2050 TCTCGCTCCCGGTTCTTGGGGCTGAAGCCTCCCAAGCTATTCTCCATTTCTGTGAGAGGC 2109
Query 367 CGGTCTGCAATGCTGTGTTTGTCTAGCCGACCTTGGCTTGGTTATATTCACCGGGGACAC 426
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2110 CGGTCTGCAATGCTGTGTTTGTCTAGCCGACCTTGGCTTGGTTATATTCACCGAGGACAC 2169
Query 427 TTCCACTTGACGCCTCTGTCTTATGAGACTTTGGAATTTGCTGCCCCCTTTTCATCTGAT 486
||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 2170 TTCCATTTGACGCCTCTGTCTTACGAGACTCTGGAATTTGCTGCCCCCTTTTCATCTGAT 2229
Query 487 CAGTGCGCTGAAGGTGTTGTCTCTGTCGCAGGGGATGCTCTGAGAATTTTCATGATTGAT 546
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 2230 CAGTGCGCTGAAGGTGTTGTCTCTGTCGCTGGGGATGCTCTGAGAATTTTTATGATTGAT 2289
Query 547 CGTCTTGGTGAAACGTTCAACGAAACAGTGGTCCCTCTGAGGTACACGCCTAGAAAGTTT 606
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2290 CGTCTTGGTGAAACATTCAACGAAACAGTGGTCCCTCTGAGGTACACGCCTAGAAAGTTT 2349
Query 607 GTTCTCCAACCCAAGCGGAAGTTGTTGGTTATTATCGAGAGTGACCAGGGAGCATTCACC 666
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2350 GTTCTCCATCCCAAGCGGAAGTTGTTGGTTATTATCGAGAGTGACCAGGGAGCATTCACC 2409
Query 667 GCAGAAGAGCGTGAAGCTGCAAGAAAGGAGTGCTTCGAGGCTGGTGGAGTGGGAGAAAAT 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2410 GCAGAAGAGCGTGAAGCTGCAAGAAAGGAGTGCTTCGAGGCTGGTGGAGTGGGAGAAAAT 2469
Query 727 GGTAATGGCAATGCAGATCAGATGGAGAATGGTGCGGATGATGAAGATAAGGAAGACCCG 786
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2470 GGCAATGGCAATGCAGATCAGATGGAGAATGGTGCGGATGATGAAGATAAGGAAGACCCG 2529
Query 787 CTTTCTGATGAGCAGTACGGTTATCCAAAAGCAGAGTCTGAAAAGTGGGTTTCTTGCATC 846
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2530 CTTTCTGATGAGCAGTACGGTTATCCAAAAGCAGAGTCTGAAAAGTGGGTCTCTTGCATC 2589
Query 847 AGAGTTCTTGATCCCAAGACAGCTACGACAACTTGTCTCCTGGAACTTCAAGACAACGAA 906
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2590 AGAGTTCTTGATCCCAAGACAGCTACGACAACTTGTCTCCTGGAACTTCAGGACAACGAA 2649
Query 907 GCTGCATACAGTGTCTGTACGGTGAATTTCCATGATAAAGAGTATGGTACATTGTTGGCT 966
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2650 GCTGCATACAGTGTCTGTACGGTGAATTTCCATGATAAAGAGTATGGTACACTGTTGGCT 2709
Query 967 GTTGGTACAGTCAAAGGGATGCAGTTCTGGCCCAAAAAGAATCTAGTGGCTGGGTTCATA 1026
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2710 GTTGGTACGGTCAAAGGGATGCAGTTCTGGCCCAAGAAGAATCTAGTGGCTGGGTTCATA 2769
Query 1027 CATATTTATAGGTTTGTGGAGGAAGGGAAATCTCTTGAGCTTCTTCATAAGACGCAAGTA 1086
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2770 CATATTTATAGGTTTGTGGAGGATGGGAAATCTCTTGAGCTTCTTCATAAGACGCAAGTA 2829
Query 1087 GAAGGTGTTCCTCTTGCTCTGTGCCAGTTCCAAGGAAGACTGCTGGCAGGGATCGGACCT 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2830 GAAGGTGTTCCTCTTGCTCTGTGCCAGTTCCAAGGAAGACTGCTGGCAGGGATCGGACCT 2889
Query 1147 GTCCTCAGATTGTATGATTTGGGGAAAAAGAGACTGCTTAGGAAATGTGAAAACAAGCTC 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2890 GTCCTCAGATTGTATGATTTGGGGAAAAAGAGACTGCTTAGGAAATGTGAAAACAAGCTC 2949
Query 1207 TTTCCAAACACCATTATCTCTATCCAAACTTACCGTGACCGTATATACGTTGGTGACATT 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2950 TTTCCAAACACCATTATCTCTATCCAAACTTACCGTGACCGTATATACGTTGGTGACATT 3009
Query 1267 CAGGAGTCTTTCCATTACTGCAAGTACAGGCGCGACGAGAATCAGCTATACATATTTGCG 1326
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3010 CAGGAGTCTTTCCATTACTGCAAGTACAGGCGCGACGAGAATCAGCTGTACATATTTGCG 3069
Query 1327 GATGACTGCGTGCCGAGGTGGCTGACAGCATCGCACCATGTGGATTTCGATACCATGGCA 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3070 GATGACTGCGTGCCGAGGTGGCTGACAGCATCGCACCATGTGGATTTCGATACCATGGCA 3129
Query 1387 GGTGCAGATAAGTTTGGGAATGTGTATTTTGTGCGGTTGCCTCAGGATCTGTCTGAGGAG 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3130 GGTGCAGATAAGTTTGGGAATGTGTATTTTGTGCGGTTGCCTCAGGATCTGTCGGAGGAG 3189
Query 1447 ATAGAAGAAGACCCGACAGGCGGGAAGATAAAGTGGGAGCAAGGAAAGCTGAATGGAGCA 1506
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3190 ATAGAAGAAGACCCGACTGGCGGGAAGATCAAGTGGGAGCAAGGAAAGCTGAATGGAGCA 3249
Query 1507 CCGAACAAAGTGGATGAGATAGTACAGTTCCATGTTGGGGACGTAGTGACGTGCTTGCAG 1566
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3250 CCGAACAAAGTGGATGAGATAGTACAGTTCCATGTTGGGGACGTTGTGACGTGCTTGCAG 3309
Query 1567 AAAGCTTCGATGATCCCAGGTGGATCGGAATCCATAATGTATGGAACAGTGATGGGTAGC 1626
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3310 AAAGCTTCGATGATCCCAGGTGGATCGGAATCGATAATGTATGGAACAGTGATGGGTAGC 3369
Query 1627 ATAGGGGCATTACATGCTTTCACATCGCGTGATGATGTGGATTTCTTCTCTCATCTGGAG 1686
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3370 ATAGGGGCATTACATGCTTTCACATCCCGTGATGATGTGGATTTCTTCTCTCATCTGGAG 3429
Query 1687 ATGCACATGAGGCAGGAGTATCCTCCTCTCTGCGGGAGAGACCACATGGCTTACAGATCT 1746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3430 ATGCACATGAGGCAGGAGTATCCTCCTCTCTGCGGGAGAGACCACATGGCTTACAGATCT 3489
Query 1747 GCATATTTTCCGGTCAAGGACGTGATAGATGGAGATCTGTGTGAGCAGTTCCCGACACTC 1806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3490 GCATATTTTCCGGTCAAGGACGTGATAGATGGAGATCTGTGTGAGCAGTTCCCGACACTC 3549
Query 1807 CCAATGGACTTGCAGAGGAAAATAGCAGACGAGTTGGATCGAACACCTGCGGAGATTCTG 1866
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 3550 CCAATGGACTTGCAGAGGAAAATAGCAGACGAGCTGGATAGAACACCTGCGGAGATTCTG 3609
Query 1867 AAGAAGCTCGAAGACGCAAGGAATAAGATCATTT 1900
||||||||||||||||||||||| ||||||||||
Sbjct 3610 AAGAAGCTCGAAGACGCAAGGAACAAGATCATTT 3643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94176222420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5