BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898471
Length=2820
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07650.2 | Symbols: | Leucine-rich repeat transmembrane pro... 1103 0.0
> AT1G07650.2 | Symbols: | Leucine-rich repeat transmembrane protein
kinase | chr1:2359673-2366447 REVERSE LENGTH=3231
Length=3231
Score = 1103 bits (597), Expect = 0.0
Identities = 1301/1632 (80%), Gaps = 83/1632 (5%)
Strand=Plus/Plus
Query 1113 TGGCTCTGACAAGCACTGGGCATTTAGCAGCACC-GGACACTTCAT-G--AATGATCTTA 1168
|||| || |||||| |||||| || ||||||||| ||| ||||||| | ||||| | |
Sbjct 1380 TGGCGCTAACAAGCGCTGGGCGTTGAGCAGCACCGGGA-ACTTCATGGACAATGA--TGA 1436
Query 1169 CAGAAG-TGGATGACTACACCGTGTC-TAACACCTCTACACTATTAGCTGATGCTTCGTC 1226
| || | | ||||| || || ||| | ||||| || | ||| || | ||||||| ||
Sbjct 1437 C-GATGCT-GATGAGTATACTGTG-CAGAACACATCCAGGTTATCAGTTAATGCTTCCTC 1493
Query 1227 TCCAAG-TTTCGTGTTGTACAAGACGGCTCGGA-TTTCTCCTCTCTTGTTGACTTACTAC 1284
||| || ||| | || || | ||| |||| || | |||||| | | |||||||||||||
Sbjct 1494 TCCCAGCTTTGGACTT-TATAGGACAGCTC-GAGTCTCTCCTTTATCGTTGACTTACTAC 1551
Query 1285 GGACTCTGTCTCGGCAATGGGGAGTACACTGTGAGTCTCCACTTCGCAGAGATAATATTT 1344
||| ||||||| || |||||| | |||||||||| ||||||||| || ||||| || |||
Sbjct 1552 GGAATCTGTCTTGGAAATGGGAACTACACTGTGAATCTCCACTTTGCTGAGATCATCTTT 1611
Query 1345 ACCAG-CGACAATACATTCTACAGTCTTGGGAAAAGAGTGTTCGATATTTATGTTCAGGA 1403
||| | ||||||||||| |||||||| || ||| | |||| |||||||||||||||||
Sbjct 1612 ACC-GATGACAATACATTATACAGTCTCGGCAAACGTTTGTTTGATATTTATGTTCAGGA 1670
Query 1404 TAAGTTGATGATTAAAAACTTCAACATTAAAGAAGCTGCTGGTGGATCGGGGAAGCCAAT 1463
| ||||| ||||||||||||| |||||| ||||||||||| | ||||| || ||||||||
Sbjct 1671 TCAGTTGGTGATTAAAAACTTTAACATTCAAGAAGCTGCTCGAGGATCAGGTAAGCCAAT 1730
Query 1464 CA-TAAAGACATTTTTGGTAGATGTAACAAATCACAATCTGAAGATCAGCTTGAGGTGGG 1522
|| |||| | ||| ||||| ||||||| | || | ||||||||| | ||| | ||||
Sbjct 1731 CATTAAA-TCGTTTCTGGTAAATGTAACGGACCATACTCTGAAGATTGGTTTGCGATGGG 1789
Query 1523 CTGGCAAAGGGACAACTACGC-TTCCAATTAGAGGAGTTTACGGCCCTATGATCTCAGCC 1581
|||||||||||||||| | || |||| |||||||| || || || |||||||| |||||
Sbjct 1790 CTGGCAAAGGGACAAC-AGGCATTCCGATTAGAGGGGTATATGGTCCTATGATTTCAGCT 1848
Query 1582 ATATCAGTTGAACCTAATTTTAAATCTCCGG-AGCATGATGACA-AGAAGAATATCCTAC 1639
||||| || ||||| ||||| ||| |||||| | || |||||| | ||| ||||| |||
Sbjct 1849 ATATCTGTGGAACCCAATTTCAAACCTCCGGTA-TATTATGACACA-AAGGATATCATAC 1906
Query 1640 TAATAGTAGGAATTA--TAGTTGCCGCAGTAATC-C-TCATTGTGGTCATCATCACAGTG 1695
||| ||| || || | || || |||| || | | || || | || | |||| ||||
Sbjct 1907 TAAAAGT-GGGGGTACCT-GTCGCTGCAGCAA-CACTTC-TT-TTGT--TTATCATAGTG 1959
Query 1696 ATCATTTGCTTGTGGAAAAGAAGGTGTTACAAAAATGCA-ATGGACAAAGAGCTGAGGGG 1754
| | || ||||||| |||| || ||||||||| | || ||||||||||| |||||
Sbjct 1960 --GGTGT-ATTCTGGAAAAAAAGGCGTGACAAAAATG-ATATTGACAAAGAGCTAAGGGG 2015
Query 1755 TTTAGATCTTCAGACTGGAACCTTCACTCTTCGACATATAAAAGCGGCCACTAATAACTT 1814
| |||||||||| |||||||| || ||||| || || |||||||| |||||| |||| ||
Sbjct 2016 TCTAGATCTTCAAACTGGAACTTTTACTCTACGGCAGATAAAAGCAGCCACTGATAA-TT 2074
Query 1815 T-GATGCAGCAA-ACAAGATTGGTGAAGGTGGATTTGGCTCTGTTTACAAGGGTGTGTTA 1872
| |||| | ||| | |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2075 TCGATGTAACAAGA-AAGATTGGTGAAGGTGGATTTGGCTCTGTTTACAAGGGTGAATTA 2133
Query 1873 TCCGAGGGGAGGA-CGATTGCGGTTAAAAAATTGTCTTCAAAGTCCAATCAAGGAAGCCG 1931
|| ||||||| | ||||| |||||| || ||||| |||| || | || |||| ||
Sbjct 2134 TCTGAGGGGA-AATTAATTGCAGTTAAACAACTGTCTGCAAAATCGAGGCAGGGAAATCG 2192
Query 1932 AGAGTTTGTGAATGA-ATTAGGGATGATCTCATCTCTACAACATCCAAATCTTGTGAAAC 1990
|||||||| ||||| | |||| ||||||||| |||| |||||||| ||||||||||| |
Sbjct 2193 CGAGTTTGTAAATGAGA-TAGGAATGATCTCAGCTCTTCAACATCCGAATCTTGTGAAGC 2251
Query 1991 TATATGGATGTTGTG-TGGAGAAGAAGCAACTGATATTGGTCTACGAGTATTTGGAGAAC 2049
||||||||||||||| || || | || ||| |||||||||| || ||||| |||||||||
Sbjct 2252 TATATGGATGTTGTGTTGAAGGA-AACCAATTGATATTGGTGTATGAGTACTTGGAGAAC 2310
Query 2050 AACTGTCTTTCTCGTGC-TCTA-TT--------TG-GA--TCGAGACTGAAATTAGAATG 2096
|||||||| ||||| || | || || || || || ||||||||| |||| ||
Sbjct 2311 AACTGTCTATCTCGAGCGT-TATTTGGAAAGGATGAGAGTTCTAGACTGAAACTAGACTG 2369
Query 2097 GCCAACAAGGAAGAAGATTTGTTTGGGCATAGCTAAAGGACTAACATTTCTCCATGAAGA 2156
| |||||||||||||||||| |||||| ||||| || ||||| |||||||||||||||||
Sbjct 2370 GTCAACAAGGAAGAAGATTTTTTTGGGGATAGCCAAGGGACTGACATTTCTCCATGAAGA 2429
Query 2157 ATCT-GTGATCAAGATTGTGCACAGGGATATTAAAG-CGAGCAACGTGTTGCTAGATGAG 2214
|||| | ||| |||||||| ||||| ||||| |||| | ||||| ||||| || ||| ||
Sbjct 2430 ATCTAG-GATAAAGATTGTACACAGAGATAT-AAAGGCAAGCAATGTGTTACTCGATAAG 2487
Query 2215 GATCTCAATGCCAAAATCTCTGACTTTGGTTTGGCAAAGCTGAATGATGATGAAAACACG 2274
|||||||| || ||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 2488 GATCTCAACGCTAAAATTTCTGACTTTGGTTTGGCAAAGCTGAATGATGATGGAAACACA 2547
Query 2275 CACATCAACACTCGTATCGCCGGAAC-ACCAGGATATATGGCTCCGGAATACGCCATGCG 2333
||||||| ||||||||| || ||||| | ||| ||||||||||| ||||| || |||||
Sbjct 2548 CACATCAGCACTCGTATTGCAGGAACTAT-AGGTTATATGGCTCCTGAATATGCAATGCG 2606
Query 2334 GGGTCATTTGACCGAAAAAGCAGATGTTTATAGCTTTGGCGTCGTTGCCCTTGAAATCGT 2393
||| | ||||| |||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct 2607 TGGTTACTTGACTGAAAAAGCGGATGTTTATAGCTTCGGCGTCGTTGCACTCGAAATCGT 2666
Query 2394 CAGTGGAAAGAGTAACTCAAACGTCAAACAACCAAGCGAGAACTTGGAGTGCCTTCTTGA 2453
||||||||||||||| ||||| | | | | || |||| |||| | | |||||||||
Sbjct 2667 TAGTGGAAAGAGTAACACAAACTTTAGGC--C-AACCGAGGACTTTGTTTACCTTCTTGA 2723
Query 2454 TCAGGCCTACGTTTTGCAAGACATG-GGATGCTTACTAGA-CTTGGTTGACCCAGTGCTA 2511
| ||| |||||||||||||| | | ||| |||||||||| || |||||| ||| | ||
Sbjct 2724 TTGGGCTTACGTTTTGCAAGAGA-GAGGAAGCTTACTAGAGCT-GGTTGATCCAACGTTA 2781
Query 2512 GGTTCAGCTTACTCAAAAGAGGAAGCAATGGTGAT-CTTGAACGTGGCGCTAATGTGCAC 2570
| |||| ||||||| |||||||||| ||| |||| || ||||||||| | ||||||||
Sbjct 2782 GCCTCAGATTACTCAGAAGAGGAAGCCATGTTGATGCT-GAACGTGGCATTGATGTGCAC 2840
Query 2571 TAACACGTCCCCGGCGT-TAAGGCCAAAAATGTCGCAGGTCGTGAGTCTCCTCGAGGAAA 2629
|||| | || ||| | | ||||||| | |||||||||||| ||||||||| | |||| |
Sbjct 2841 TAACGCATCACCGAC-TCTAAGGCCTACAATGTCGCAGGTGGTGAGTCTCATAGAGGGGA 2899
Query 2630 AGACCGCAATGAAAAACCTGTTGTCGGACCCAAACTTCTCAGCAGTGAACCCGAAGCTGA 2689
|||| || ||| || | || ||||||| || | ||||||| | || ||||||||||| |
Sbjct 2900 AGACAGCGATGCAAGAGTTGCTGTCGGATCCGAGCTTCTCAACGGTTAACCCGAAGCTTA 2959
Query 2690 AGGCTTTAAGGA 2701
| || || ||||
Sbjct 2960 AAGCCTTGAGGA 2971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 140116271799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5