BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg898532

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G55910.1 | Symbols:  | unknown protein; Has 4 Blast hits to ...   298    2e-80


> AT3G55910.1 | Symbols:  | unknown protein; Has 4 Blast hits to 
4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 
0 (source: NCBI BLink). | chr3:20742899-20743479 FORWARD LENGTH=488
Length=488

 Score =  298 bits (161),  Expect = 2e-80
 Identities = 243/283 (86%), Gaps = 4/283 (1%)
 Strand=Plus/Plus

Query  1    ATGAAGAAGGCGCTCACTACAAGACGTCCTCCAATAGATATTTATTTTATCCGTAGCGAA  60
            ||||||||||||||||| ||||||| ||||||||||||| |||||| |||| |||| |||
Sbjct  2    ATGAAGAAGGCGCTCACCACAAGACATCCTCCAATAGATGTTTATTGTATCTGTAGGGAA  61

Query  61   GTGACAGAGGTAATGGAGAAATTGCATGCCTCCGATGCTGAAACCATCCCTCGTGCCACC  120
            |||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||| |
Sbjct  62   GTGACAGAGGTAATGGAGAAATTGCATGCCGCGGATGCTGAAACCATCCCTCTTGCCAGC  121

Query  121  CGTATAGAAATGGTCAACCAAT--TGAATTGCTACGTCATAATGTCATATTGGCGTCTTT  178
              |||| |||||||||| | ||  |||||  ||||||||| ||||| ||  ||| |||| 
Sbjct  122  AATATACAAATGGTCAA-C-ATGGTGAATAACTACGTCATTATGTCCTACGGGCTTCTTC  179

Query  179  GCGATGATTATGAATACGGACCCATAATTGAGAGTTGCCGAAAGGATGTGCTGCTCTTAT  238
             ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct  180  ACGATGATTATGAATACGGAGCCATAACTGAGAGTTGCCGAAAGGATGTGCTGCTCTTAT  239

Query  239  TGAATGAGATATATCCGCCGATAATAGATACGCCGGAAAATTA  281
            |||  ||| ||| ||||  || |||| ||  |  |||||||||
Sbjct  240  TGAGGGAGTTATTTCCGAGGAAAATATATTTGTGGGAAAATTA  282



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12969079242


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5