BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898568
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56250.1 | Symbols: | unknown protein; Has 109 Blast hits t... 998 0.0
> AT3G56250.1 | Symbols: | unknown protein; Has 109 Blast hits
to 83 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa
- 18; Fungi - 20; Plants - 21; Viruses - 0; Other Eukaryotes
- 44 (source: NCBI BLink). | chr3:20866120-20867840 FORWARD
LENGTH=669
Length=669
Score = 998 bits (540), Expect = 0.0
Identities = 633/677 (94%), Gaps = 10/677 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGCTCCTCGCTCCGTCGGAGGAAGAATACAGAGGAAACCGCTCGCGGATTGTACC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGCTCCTCGCTCCGTCGGAGGAAGAATACAGAGGAAACCGCTCGCGGATTGTACT 60
Query 61 AACACCGTCTCCAGATCTTCTCAACAGTCATCTTCTTCAGTCAAATTCGCGAATCCGAGT 120
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 61 AACACCGTCTCCAGATCTTCTCAACAGTCATCTTCTTCTGTAAAATTCGCGAATCCGAGT 120
Query 121 CTCACTTCTTCACTTAAGAGGAT-AGTAGAACAAACTACGCTCAAGGAGAAACCCAAAGA 179
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCACTTCTTCACTAAAGAG-ATTAGTAGAACAAACTACGCTCAAGGAGAAACCCAAAGA 179
Query 180 TGTTATTACTTCAGAGACTACTTCTGAGAGCGCTTCTCGGTCTCTTGCCACGAACGTTAG 239
||||| |||||| | |||| || | || | |||||||||| || || ||||| |||||||
Sbjct 180 TGTTAATACTTCGGCGACTGCTCCCGAAATCGCTTCTCGGCCTATTACCACGGACGTTAG 239
Query 240 ACCCGTAACTCGCCGTATGTCTGCCGATCTGGGTTCTCCGGCCTCTGCTCCTTCTCGTCC 299
|||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||
Sbjct 240 ACCCGTAACTCGCCGTATGTCTGCTGATCTGGCTTCTCCGGCCTCAGCTCCTTCTCGTCC 299
Query 300 CCAAACATCGCGATCTGATATGGGCGTTAGTGACAAGGATGATTTTGCTGAGCCTTGGTC 359
|||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||
Sbjct 300 CCAAACATCGCGATCTGATATGGGTGTTAGTGACAAGGAT--TTTA-CTGAGCCTTGGTC 356
Query 360 TGTTTACACGGTAAGAAGGAAGGCCTCTGGACAAAAAAGGAGTAAAGACGCTTCTTCCTC 419
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 357 TGTTTACACGGTAAGAAGGAAGGCCTCTGGACAAAAAAGAAGTAAAGACGCATCTTCCTC 416
Query 420 TACTAGTGCAGCAGCTCGCCTTCGTCTCGACTTGACATCAAGCTCTCGGAAGAAAACACA 479
||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 417 TACTAGTGCAGCAGCTCGCATTCGTCTCGACTTGTCATCAAGCTCTGGGAAGAAAACACG 476
Query 480 TCAAGCAAGTGAAAACAAAAAGAAGACGACCTTGAAAGTGGCTCCAAAAAAGAGACAGCG 539
|||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 477 TCAAGCTAGTGAAAACAAAAAGAAGAC--C-TTGAAAGTGGCTCCAAAAAAGAGACAGCG 533
Query 540 GACGTTAAAGCCAGAGAAAAAGGATCCGGTTAATGCAGCTTGTCAGGATTATATCGAGAA 599
|||| |||||| ||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 534 GACGGTAAAGCAAGAGAAAGAGGATCCGGTTAGTGCAGCTTGTCAGGATTATATCGAGAA 593
Query 600 GCAGAAAGCTTATTTTGCAGAGATCGATGCATTTGAGCTGCCCA-TAGAAGAGGTATCTA 658
|||||||||||| ||||||||||| ||||||||||||||||| | |||||||||||||||
Sbjct 594 GCAGAAAGCTTACTTTGCAGAGATTGATGCATTTGAGCTGCC-AGTAGAAGAGGTATCTA 652
Query 659 ATAGCGACTCAGACTAA 675
|||||||||||||||||
Sbjct 653 ATAGCGACTCAGACTAA 669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32652195550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5