BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898573
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38830.1 | Symbols: | Cysteinyl-tRNA synthetase, class Ia f... 929 0.0
AT3G56300.1 | Symbols: | Cysteinyl-tRNA synthetase, class Ia f... 900 0.0
> AT5G38830.1 | Symbols: | Cysteinyl-tRNA synthetase, class Ia
family protein | chr5:15545569-15548186 REVERSE LENGTH=1823
Length=1823
Score = 929 bits (503), Expect = 0.0
Identities = 912/1106 (82%), Gaps = 41/1106 (4%)
Strand=Plus/Plus
Query 1 ATGGAGGAGGAGAAACCGGAGTTGACA-TTGTATAACACGATGACTCAGTTGAAAGAAGT 59
||||||| ||||||| ||| |||| | | || ||||||||||| || |||||||||
Sbjct 93 ATGGAGGCGGAGAAAATGGAATTGA-AGCTCTACAACACGATGACGCAACAGAAAGAAGT 151
Query 60 TTTTAAGCCGATCAATCCCGGCAAGATCGGGA-TGTATGTCTGTGGCATCACCGCCTACG 118
||| | || |||| ||| ||||| ||| ||| | || |||||||| |||||||| ||||
Sbjct 152 TTTGATTCCAATCACTCCTGGCAAAATC-GGATTATACGTCTGTGGTATCACCGCTTACG 210
Query 119 ATTAT-AGCCATATTGGGCACGCTCGTGCCGCCGTCTCTTTTGACCTCCTTTACAGGTAC 177
||| | |||||||| || || ||||| |||||||| || || || | |||||||| |||
Sbjct 211 ATT-TCAGCCATATCGGCCATGCTCGCGCCGCCGTTTCCTTCGATGTTCTTTACAGATAC 269
Query 178 TT-AAGGCACTTGGGTTATGAAGTTAATTATGTCAGAAATTTTACAGATGTTGATGACAA 236
|| || ||| |||| |||||| |||| || |||| | ||||| || ||||||||||||||
Sbjct 270 TTGAA-GCATTTGGATTATGATGTTACTTTTGTCCGCAATTTCACTGATGTTGATGACAA 328
Query 237 GGCTA--AAAAGTG----T--G--GGGAGAAG--CCGTTAGATTTGAGTAATCGCTTTTG 284
| || | ||| | | ||||||| |||||||||||||||||||| |||||
Sbjct 329 GATTATTGATCGTGCTAATAAGAATGGAGAAGACCCGTTAGATTTGAGTAATCGGTTTTG 388
Query 285 CGAGGAGTATCTT-CTAGATATGACTGCTCTTCAGTGCCTCCTTCCCACCCGCCAGCCTC 343
||| || ||| || |||||||| |||||| |||||||||| |||||||| ||||||||
Sbjct 389 CGATGAATAT-TTGGTAGATATGGGTGCTCTGCAGTGCCTCCCTCCCACCCACCAGCCTC 447
Query 344 GTGTCAGTGACCATATGGAGC-ACATCATTAAGATGATAGAAAAGATCATTGA-AAACGG 401
||||||| || |||||||| | ||||||||||||||||||||||||||||||| ||| |
Sbjct 448 GTGTCAGCGAACATATGGA-CAACATCATTAAGATGATAGAAAAGATCATTGAGAAA--G 504
Query 402 A-TGTGGGTATGCT-GTGGGTGGAGATGTGTTCTTCTCAGTGGATAAATCACCGAATTAC 459
| |||||||||| | |||| || |||||||||||||| || || ||||||||||||||
Sbjct 505 ATTGTGGGTATG-TAGTGGAAGGGGATGTGTTCTTCTCCGTTGACAAATCACCGAATTAT 563
Query 460 GGTCAATTATCTGGGCA-ACGACTGGATCATACTCAAGCTGGTAAGCGTGTTGCTGTTGA 518
|| ||||||||||||| | |||| ||||| | ||||||| ||||||||||||||||
Sbjct 564 GGGAAATTATCTGGGCAGTTG-TTGGAACATACACGAGCTGGTGAGCGTGTTGCTGTTGA 622
Query 519 CTCAAGGAAGCGCAATCCTGCTGACTTTGCATTATGGAAGGCTGCAAAATCTGGTGAACC 578
|| || ||||| || |||||||| ||||||||||||||||| ||||| ||| ||| ||
Sbjct 623 TTCGAGAAAGCGTAACCCTGCTGATTTTGCATTATGGAAGGCGGCAAAGCCTGATGAGCC 682
Query 579 AAGTTGGGAGAGTCCTTGGGGTCCAGGAAGACCAGGATGGCACATTGAGTGCAGTGCCAT 638
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 683 AAGTTGGGAGAGCCCTTGGGGTCCAGGAAGACCAGGATGGCACATCGAGTGCAGTGCAAT 742
Query 639 GAGTGCTCATTACCTGTCTCAGAGATTTGACATTCATGGTGGTGGCGCAGATCTAAAATT 698
||||| |||||| ||||||| || |||||| |||||||| ||||| |||||||| |||||
Sbjct 743 GAGTGTTCATTATCTGTCTCCGAAATTTGATATTCATGGAGGTGGTGCAGATCTTAAATT 802
Query 699 CCCGCACCATGAAAATGAGATCGCCCAGACATGTGCTGCTTGTGAAGATAGTGGTGTGAA 758
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 803 CCCGCATCATGAAAATGAGATCGCCCAGACATGTGCTGCATGTGAGGATAGTGGTGTAAA 862
Query 759 TTACTGGTTGCATAATGGGCATGTCACCAACAACAATGTGAAGATGGGAAAATCACTGGA 818
||||||||||||||||||||||||||| | |||||| | |||||||| ||||||| | |
Sbjct 863 TTACTGGTTGCATAATGGGCATGTCACTATCAACAACGAGAAGATGGCAAAATCAAAGCA 922
Query 819 CAACTTTTTTACGATTAGAGAAATCACGGCTAAG-TATCATCCACTGGCTCTGAGACACT 877
||||||| |||||||||||||| || |||| | || |||||| |||||||||| ||||
Sbjct 923 CAACTTTAAAACGATTAGAGAAATAACCGCTA-GCTACCATCCATTGGCTCTGAGGCACT 981
Query 878 TCTTGATGAGTGCACAGTACCGTTCTCCTCTGAACTATTCGGTG--TCGCAGCTAGAGAG 935
|||||||||||||||||||||| |||||||||| | ||| || ||||||||||||||
Sbjct 982 TCTTGATGAGTGCACAGTACCGGTCTCCTCTGAG-T-TTCACTGCCTCGCAGCTAGAGAG 1039
Query 936 TTCATCGGATGCTTTATATTGTGTTTATCAGACATTAGAAGACCTTGTTAAAGCTCTATC 995
||| || || |||||||| | |||||| ||||| ||| |||| |||| | ||| ||| ||
Sbjct 1040 TTCGTCAGAAGCTTTATACTATGTTTACCAGACTTTACAAGATCTTGATGAAGGTCTGTC 1099
Query 996 GCCATATCGAGAAGAAATGAGTGGAGATGTTGGAAAGA-CTCAACAGTCTGCGGAAGCCA 1054
||||||| ||| | | || || ||||| |||||| | || |||| |||| |||| |
Sbjct 1100 ACCATATCAAGACGCATTGTCTGAAGATGGTGGAAA-ATCTGAACAAACTGCAGAAGGAA 1158
Query 1055 AAGAGATGATAAAGAAGGTGAAAAAC 1080
|||| || || |||||| | ||||||
Sbjct 1159 AAGACATCATTAAGAAGCT-AAAAAC 1183
> AT3G56300.1 | Symbols: | Cysteinyl-tRNA synthetase, class Ia
family protein | chr3:20880169-20882366 FORWARD LENGTH=1470
Length=1470
Score = 900 bits (487), Expect = 0.0
Identities = 582/629 (93%), Gaps = 2/629 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAGGAGAAACCGGAGTTGACATTGTATAACACGATGACTCAGTTGAAAGAAGTT 60
||||||| |||||||||||| ||||||||||| ||||| |||||||| |||| ||||||
Sbjct 10 ATGGAGGTGGAGAAACCGGATTTGACATTGTACAACACAATGACTCAACTGAAGGAAGTT 69
Query 61 TTTAAGCCGATCAATCCCGGCAAGATCGGGATGTATGTCTGTGGCATCACCGCCTACGAT 120
| ||||||||| ||||||||||| ||||| || ||||| || || |||||||| ||||||
Sbjct 70 TATAAGCCGATGAATCCCGGCAAAATCGGAATCTATGTATGCGGTATCACCGCTTACGAT 129
Query 121 TATAGCCATATTGGGCACGCTCGTGCCGCCGTCTCTTTTGACCTCCTTTACAGGTACTTA 180
|||||||| ||||| ||||||||||||||||| || || |||||||||||||| ||||||
Sbjct 130 TATAGCCACATTGGCCACGCTCGTGCCGCCGTGTCCTTCGACCTCCTTTACAGATACTTA 189
Query 181 AGGCACTTGGGTTATGAAGTTAATTATGTCAGAAATTTTACAGATGTTGATGACAAGGCT 240
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 190 AGGCACTTGGGTTATCAAGTTACTTATGTCAGAAATTTTACAGATGTTGATGACAAGGCT 249
Query 241 AAAAAGTGTGGGGAGAAGCCGTTAGATTTGAGTAATCGCTTTTGCGAGGAGTATCTTCTA 300
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 250 AAAAACTGTGGAGAGAAGCCGTTAGATTTGAGTAATCGCTTTTGCGAGGAGTATCTTTTA 309
Query 301 GATATGACTGCTCTTCAGTGCCTCCTTCCCACCCGCCAGCCTCGTGTCAGTGACCATATG 360
|||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 310 GATATGGCTGCTCTTCAGTGCCTCCTTCCCACCCACCAGCCTCGTGTCAGTGATCATATG 369
Query 361 GAGCACATCATTAAGATGATAGAAAAGATCATTGAAAACGGATGTGGGTATGCTGTGGGT 420
|| || ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 370 GAACAGATCATTAAGATGATAGAAAAGATCATTGAGAATGGATGTGGGTATGCTGTGGGT 429
Query 421 GGAGATGTGTTCTTCTCAGTGGATAAATCACCGAATTACGGTCAATTATCTGGGCAACGA 480
|| |||||||||||||||||||| |||||||||| ||| ||||| |||||||| |||||
Sbjct 430 GGTGATGTGTTCTTCTCAGTGGACAAATCACCGAGTTATGGTCAGTTATCTGGTCAACGG 489
Query 481 CTGGATCATACTCAAGCTGGTAAGCGTGTTGCTGTTGACTCAAGGAAGCGCAATCCTGCT 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 490 CTGGATCATACTCAAGCTGGTAAGCGTGTTGCTGTTGACTCAAGGAAGCGTAATCCTGCT 549
Query 541 GACTTTGCATTATGGAAGGCTGCAAAATCTGGTGAACCAAGTTGGGAGAGTCCTTGGGGT 600
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 550 GACTTTGCATTACGGAAGGCTGCAAAATCTGGTGAACCAAGTTGGGAGAGCCCTTGGGGT 609
Query 601 CCA-GGAAGACCAGGATGGCACATTGAGT 628
| | |||||||||||||||||||| ||||
Sbjct 610 C-ATGGAAGACCAGGATGGCACATCGAGT 637
Score = 652 bits (353), Expect = 0.0
Identities = 437/476 (92%), Gaps = 11/476 (2%)
Strand=Plus/Plus
Query 989 CTCTATCGCCATATCGAGAAGAAATGAGTGGAGATGTTGGAAAGACTCAACAGTCTGCGG 1048
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 929 CTCTATCGCCATATCGAGAAGAAATGAGTGGAGATGTTGGAAAGACTCAACAGTCTGCAG 988
Query 1049 AAGCCAAAGAGATGATAAAGAAGGTGAAAAACGCATTGAAATTCATCAACGTTTCAATCT 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 AAGCCAAAGAGATGATAAAGAAGGTGAAAAACGCATTGAAATTCATCAACGTTTCAATCT 1048
Query 1109 CCAAGCTCAAGAAAATTCAGAAAAAGCAGCGGATGTCGCTGGTTGTGTCACTGGTCGAGG 1168
|||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1049 CCAAGCTCAAGAAAATGCAGAAGAAGCAGCGGATGTCGCTGGTAGTGTCACTGGTCGAGG 1108
Query 1169 TTGAGAAAGCAGTGAGGGAAGTTCTTGATGTGCTTGGTTTGCTCACGACTCTAAGCTACG 1228
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 TTGAGAAGGCAGTGAGGGAAGTTCTTGATGTGCTTGGTTTGCTCACGACTCTAAGCTACG 1168
Query 1229 GTGAGTTTTTGAAAGAGATGAAACAAAAGGCATTAACAAGAGCAGGAATGGGAGAAGAAG 1288
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 GTGAGCTTTTGAAAGACATGAAACAAAAGGCATTAACAAGAGCAGGAATGGGAGAAGAAG 1228
Query 1289 AGGTCTTGCGGAGGATTGAAGAGAGGAGACTA-G-CCCGAAAGAATAAAGATTTCAAGAG 1346
||||||||| |||||||||||| |||| | || | |||| |||| |||||||||| |||
Sbjct 1229 AGGTCTTGCAGAGGATTGAAGAAAGGA-A-TATGGCCCGGAAGAGCAAAGATTTCAGGAG 1286
Query 1347 AAGCGATCAAATTAGAGAGTTGTTGGCAGCTAAAGGAATCGCCCTGGAGGATATTCCTGG 1406
|||||||| ||| ||||| |||||||| |||||||||| ||| |||||| |||||||
Sbjct 1287 AAGCGATCGGATTCGAGAGCTGTTGGCATTTAAAGGAATCTTCCTCGAGGATGTTCCTGG 1346
Query 1407 AAAAGACACGGTGTGGAGACCATGCACCCCTTTGA----GCCTAAATCCGGTTTAG 1458
| ||||| ||||||||||| | |||||| |||| ||||||||| |||||||
Sbjct 1347 A---GACACTGTGTGGAGACCTTCCACCCCATTGACCAAGCCTAAATCTGGTTTAG 1399
Score = 464 bits (251), Expect = 1e-129
Identities = 280/294 (95%), Gaps = 1/294 (0%)
Strand=Plus/Plus
Query 660 GAGATTTGACATTCATGGTGGTGGCGCAGATCTAAAATTCCCGCACCATGAAAATGAGAT 719
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 634 GAG-TTTGACATTCATGGTGGTGGCGCAGATCTCAAATTCCCGCACCATGAAAATGAGAT 692
Query 720 CGCCCAGACATGTGCTGCTTGTGAAGATAGTGGTGTGAATTACTGGTTGCATAATGGGCA 779
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 693 CGCCCAGACATGTGCTGCTTGTGAAGATAGTGGTGTGAACTACTGGTTGCATAACGGGCA 752
Query 780 TGTCACCAACAACAATGTGAAGATGGGAAAATCACTGGACAACTTTTTTACGATTAGAGA 839
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 753 TGTCACCAACAACAATGTGAAGATGGGAAAATCATTGAACAACTTTTTTACGATTAGACA 812
Query 840 AATCACGGCTAAGTATCATCCACTGGCTCTGAGACACTTCTTGATGAGTGCACAGTACCG 899
|||| ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 813 AATCGCGGCTAACTATCATCCACTGGCTTTGAGACATTTCTTGATGAGTGCACAGTACCG 872
Query 900 TTCTCCTCTGAACTATTCGGTGTCGCAGCTAGAGAGTTCATCGGATGCTTTATA 953
||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 873 TTCTCCTCTCAACTATTCGGTTTCGCAGCTTGAGAGTTCATCGGATGCTTTATA 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71887180440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5