BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898575
Length=1809
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56320.1 | Symbols: | PAP/OAS1 substrate-binding domain sup... 2534 0.0
> AT3G56320.1 | Symbols: | PAP/OAS1 substrate-binding domain superfamily
| chr3:20885894-20889656 REVERSE LENGTH=2424
Length=2424
Score = 2534 bits (1372), Expect = 0.0
Identities = 1704/1850 (92%), Gaps = 79/1850 (4%)
Strand=Plus/Plus
Query 1 ATGGGTGATATTCAAGAAAGATTGTCAGTTTCATCATCTTCGTCTTCTTCATCATCCTCA 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 ATGGGTGAAATTCAAGAAAGATTGTCAGTTTCATCATCTTCGTCTTCTTCATCATCCTCA 373
Query 61 TTGTCACTATCAACATCACAACCTAAAGCG-GATTCATTGCTGATAGA-GGAGGAATCTT 118
|||||||||||||| ||| |||||||| | |||||||||| |||||| | | || ||||
Sbjct 374 TTGTCACTATCAACGGCACTACCTAAAG-GAGATTCATTGCCGATAGATGCA-GATTCTT 431
Query 119 GGATGATTGCAGAGGAGAGAGCTCATGAGATACTTTGCACTATCCAACCTGCCCTTGTTT 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 GGATGATTGCAGAGGAGAGAGCTCATGAGATACTTTGCACTATCCAACCTGCCCTTGTTT 491
Query 179 CAGACAAAAGTAGGAATGAGATCATTGATTATGTACGAACTCTAATCAAGAGTCATGATG 238
|||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||| |
Sbjct 492 CAGACAGAAGTAGGAATGAGATCATTGATTATGTACGAACTCTTATCATGAGTCATGAGG 551
Query 239 GAATTGAGGTCTTTTCATTTGGTTCAGTGCCACTAAAAACTTATCTCCCAGACGGAGATA 298
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 552 GAATTGAGGTCTTTTCATTTGGTTCAGTGCCACTAAAAACCTATCTCCCGGACGGGGATA 611
Query 299 TCGACCTGACTGTCCTAACTAAGCAAAATATGGACGACGATTTTTATGGACAATTATGCA 358
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 612 TCGATCTGACTGTCCTAACTAAGCAAAATATGGATGACGATTTTTATGGACAATTGTGCA 671
Query 359 GCCGGCTTCAAAATGAAGAAAGAGAATCTGAATTCCATGCAACAGATGTTCGA-TTTATC 417
| ||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 672 GTAGGCTTCAGAATGAAGAAAGAGAATCTGAATTCCATGCAACAGATGTTC-AGTTTATC 730
Query 418 CCTGCACAGGTCAAGGTCATAAAATGCAATATCAGGAACATTGCTGTGGATATCTCTTTT 477
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 731 CCTGCACAGGTCAAGGTCATAAAATGCAATATCAGGAACATTGCTGTTGATATCTCTTTT 790
Query 478 AATCAAACGGCAGGTCTCTGTGCTTTATGTTTTCTCGAACAGGTTGACCAACTCTTTGGG 537
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 791 AATCAAACGGCAGGTCTCTGTGCTTTATGTTTTCTGGAGCAGGTTGACCAACTCTTTGGG 850
Query 538 AGAGATCATCTTTTCAAGCGTAGCATCATCCTAGTCAAAGCTTGGTGCTATTACGAGAGT 597
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 851 AGAGATCATCTTTTCAAGCGTAGCATCATCCTTGTCAAAGCTTGGTGCTATTACGAGAGT 910
Query 598 CGAATTCTTGGTGCTAACACTGGATTGATCTCAACATATGCATTGGCAGTGCTAGTTTTG 657
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 911 CGAATTCTTGGTGCTAACACTGGATTGATCTCAACATATGCATTGGCAGTACTAGTTTTG 970
Query 658 TACATCATCAACCTATCTCATTCATCTTTATCTGGCCCTTTAGCGGTTCTGTATAAGTTC 717
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 TACATCATCAACCTGTTTCATTCATCTTTATCTGGCCCTTTAGCGGTTCTGTATAAGTTC 1030
Query 718 TTGGATTACTATGGTTCATTTGACTGGAACAACTACTGTATCAGTGTCAATGGTCCTGTG 777
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1031 TTGGATTACTATGGTTCATTTGATTGGAACAACTACTGTATCAGTGTCAATGGTCCTGTG 1090
Query 778 CCAATATCTTCCCTTCCAGAACTTACGGCAGCTTCTCCAGAAAATGGGCATGAGTTATTG 837
|||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1091 CCAATATCGTCCCTTCCAGAACTTACAGCAGCATCTCCAGAAAATGGGCATGAGTTATTA 1150
Query 838 CTTGACGAGAAGTTTTTAAGAAACTGTGTAGAGTTATATTCTGCTCCAACTAAAGCTGTT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 CTTGACGAGAAGTTTTTAAGAAACTGTGTAGAGTTATATTCTGCTCCAACTAAAGCTGTT 1210
Query 898 GACTCAAATGGTCTTGAGTTTCCTATCAAACATCTCAACATAGTTGATCCTCTAAAATAC 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 GACTCAAATGGTCTTGAGTTTCCTATCAAACATCTCAACATAGTTGATCCTCTAAAATAC 1270
Query 958 AGCAACAACCTCGGAAAAAGTGTTACACAAGGAAATGTCCAACGAATAAGACATGCTTTT 1017
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 AGCAACAACCTCGGCAAAAGTGTTACACAAGGAAATGTCCAACGAATAAGACATGCTTTT 1330
Query 1018 ACACTTGGAGCTCGAAAGCTCAGAGATGTTCTTTCATTACCTGGTGACACCATGGGATGG 1077
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1331 ACACTTGGAGCTCGAAAGCTAAGAGATGTTCTTTCACTACCTGGTGACACCATGGGATGG 1390
Query 1078 AGATTGGAGAAGTTCTTTCGTAACTCTTTGGAGAGAAATGGTAAGGGACAAAGGCAAGAT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 AGATTGGAGAAGTTCTTTCGTAACTCTTTGGAGAGAAATGGTAAGGGACAAAGGCAAGAT 1450
Query 1138 GTGAATGATCCCGTTACTGCGTTT-GGTACTGGAAGATCAGAATTGTCTGAACTTAGTGG 1196
|||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||
Sbjct 1451 GTGAATGATCCCGTTACTGC-TTTCGGTACTGGAAGATCAGAATTATCTGAACTTAGTGG 1509
Query 1197 AGATTTCGA-AGGTTACTTTGGAAGACTTGTGTATGGGCAAA--T-TCATGGGTATAGCT 1252
||||||||| | ||| |||||||||||||||||||||||||| | ||||||| ||||||
Sbjct 1510 AGATTTCGATA-GTTCCTTTGGAAGACTTGTGTATGGGCAAATGTATCATGGGCATAGCT 1568
Query 1253 TACCTGGAACATTTCAGCATGGCTATATCCCGGTTAGTTCTCAAGTTACGGACCCAAGTG 1312
||||||||||||||||||||||||||||||||||||| | || | | ||| ||||
Sbjct 1569 TACCTGGAACATTTCAGCATGGCTATATCCCGGTTAG-T-TC----T-C--ACCTGAGTG 1619
Query 1313 GTTGGGATATTGTTCGTCACCTTGTGACTTACCGGAAGAACGAGTTTTATCTTAAAAGTC 1372
|||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||
Sbjct 1620 GTTGGGATATTGTTCGTCACCTTGTGACTTACCGAAAGAACGAGTTCCATCTTAGAAGTC 1679
Query 1373 TCAATG--T--A--TC-A---A--------C----C--TCTTTACCTAATGGCTGTCAAA 1408
|||||| | | || | | | | ||||||||||||||||||||||
Sbjct 1680 TCAATGTATCAACCTCTATGCAGCCTTTTCCTTTGCATTCTTTACCTAATGGCTGTCAAA 1739
Query 1409 CCAT--G--AG--GAGAGGAACCGGCACTTATATTCCTGAAATGAGTCAACAGGTATACT 1462
||| | || ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1740 ACATGAGAAAGACGAGAGGAACCGGCACTTATATTCCTGACATGAGTCAACAGGTATACT 1799
Query 1463 CTGACAGGTTCAGAGACTCATGTACTGGAACCTCATCAACTCATCACTTAGAAGCTTCCG 1522
|||||||||||||||| ||| ||||||||||||||||||| |||| ||||||||||||
Sbjct 1800 CTGACAGGTTCAGAGAATCAGGTACTGGAACCTCATCAACGAATCATTTAGAAGCTTCCT 1859
Query 1523 CTGAGGCAATAGACAACGATGGAGCCAGTAGTTGCTGCAATCTTTCTGGTGAAGTGTCTA 1582
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1860 CTGAGGCAATAGACAATGATGGAGCCAGTAGTTGCTGCAATCTTTCCGGTGAAGTGTCTA 1919
Query 1583 CTT---GTACCGGTAACAAAGGAGAAGAATGTGTGAGACCAGAGACTAATAGTAACCCAG 1639
||| ||||| ||||||||||||||||||||||||||||||||| || |
Sbjct 1920 CTTCTTGTACCAGTAACAAAGGAGAAGAATGTGTGAGACCAGAGA------GT------G 1967
Query 1640 ATCAGAAGCCTGTGCTGAAATCTCAAAGATCTGAGCATTTGGAGATTGATGACAATTGCC 1699
| | | || |||||||||||||||| | |||||||| |||||||||||||||
Sbjct 1968 -T--G---C-TG-----AAATCTCAAAGATCTGCGAATTTGGAGCTTGATGACAATTGCC 2015
Query 1700 AATTTCCACCACCACAAAACCCAGTAGAACCTCTATCTTCAAGCACATTGGTATTGGAAA 1759
|||||||||||||| |||||| |||||||||| | ||||||||||||||||||||||||
Sbjct 2016 AATTTCCACCACCAGAAAACCTAGTAGAACCTAGAACTTCAAGCACATTGGTATTGGAAA 2075
Query 1760 ATGGCAAAGAAGAGAACAGCAGATCCTCCCAAACCATGAACGGTTCTTGA 1809
||||||||||||||| | |||||||||||||||||||||||| ||||||
Sbjct 2076 ATGGCAAAGAAGAGAGTATCAGATCCTCCCAAACCATGAACGGCTCTTGA 2125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89507571735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5