BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898576
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56330.1 | Symbols: | N2,N2-dimethylguanosine tRNA methyltr... 1934 0.0
> AT3G56330.1 | Symbols: | N2,N2-dimethylguanosine tRNA methyltransferase
| chr3:20890250-20892002 FORWARD LENGTH=1371
Length=1371
Score = 1934 bits (1047), Expect = 0.0
Identities = 1219/1303 (94%), Gaps = 8/1303 (1%)
Strand=Plus/Plus
Query 1 ATGTTGTCAACTCTCTCTCCTAAAACCCTA---TCTTCTT-C--CTTCACTGTGCACAAA 54
||||||| ||||||||||||||||||||| ||||||| | ||||||||||||||||
Sbjct 1 ATGTTGTTGACTCTCTCTCCTAAAACCCTATCTTCTTCTTCCTTCTTCACTGTGCACAAA 60
Query 55 TCGCAAAACCCTAGATGTAAATCCCCAAATTCATGTCGATTCCAGAG-TTCTAAATGTAG 113
||||||||||||| ||||||||| ||| |||||||||||||| |||| || ||||||||
Sbjct 61 TCGCAAAACCCTAAATGTAAATCTCCAGATTCATGTCGATTCAAGAGCTT-GAAATGTAG 119
Query 114 ATTCAATCCCATTTTCGTGAAATCCGAGGTTCAGATTGAGAGGAATCTCGAATTTGAAAC 173
|| ||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 120 TTTTGATCGAATTTTAGTGAAATCCGAGGTTCAAATTGAGAGGAATCTCGAATTTGAAAC 179
Query 174 GGGAGAGACATTTTTCCGCCATGAAAGCGCTAGAGGACGAGACCTCGGTGTTTTGTCGGC 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 GGGAGAGACATTTTTCCGCCATGAAAGCGCTAGAGGACGAGACCTCGGTGTTTTGTCAGC 239
Query 234 GACGCTATACAAGAGATCTAATGGAAGCTTACGGGTACTTGACGCAATGTGCGGATGTGG 293
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 GACGCTATACAAGAGATCTAATGGAAGCTTACGGGTACTCGACGCAATGTGCGGATGTGG 299
Query 294 AATTAGGTCGCTTCGTTATCTTGTGGAAGCTGATGCTGATTTCGTGATGGCGAATGACGC 353
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 300 AATTAGGTCGCTTCGTTATCTTGTGGAAGCTGAAGCTGATTTCGTGATGGCGAACGACGC 359
Query 354 GAACGATGCTAATCGGAGAGTGATTACGGATAATCTGAGTAAAGTAGAGAGAGGTGTTGG 413
|| |||| ||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 360 AAATGATGATAATCGGAGAGTGATTACGGATAATTTGAGTAAAGTAGAGAGAGGTACTGG 419
Query 414 TGATGAGAGGAGATGGGTCGTGACGCATATGTTGGCTAATAAAGCGATGATTGAGCGATA 473
||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||
Sbjct 420 AGATGAGAGGAGATGGGTTGTGACTCATATGTTGGCTAATAAAGCGATGATTGAGAGATA 479
Query 474 TATGGTTGCGGATTTCTTCGATATGATTGACATTGATTCGTTTGGGAGCGATTCGTCGTT 533
|||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||||
Sbjct 480 TATGGTTGCGGATTTCTTCGATATGATTGATATTGATTCGTTTGGAAGTGATTCTTCGTT 539
Query 534 TTTGAGAGATGCGTTTAATGCATTGAGATTGGGTGGTTTGCTTTACCTCACGTCAACTGA 593
|||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||
Sbjct 540 TTTGAGAGATGCGTTTAATGCATTGAGATTGGGTGGTTTGCTTTACTTGACGTCGACTGA 599
Query 594 TGGTTACTCTTCTGGTGGTCACAGACCTTATAATTCTTTAGCAGCCTATGGAGCATTTAT 653
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 TGGTTACTCTTCTGGTGGTCACAGACCTTATAATTCTTTAGCAGCTTATGGAGCATTTAT 659
Query 654 TCGACCAATGCCATTTGGGAATGAGATTGGGCTACGGATGCTTATAGGCGGAGCAGTAAG 713
|||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 660 TCGACCAATGCCGTTTGGGAATGAGATTGGGCTGCGGATGCTTATAGGTGGAGCAGTGAG 719
Query 714 AGAGGCCGCTCTGCTTGGTTATCATGTTACGCCTCTTTTCTCGTACTATTCTTATCATGG 773
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 AGAAGCTGCTCTGCTTGGTTATCATGTTACGCCTCTTTTCTCGTACTATTCTTATCACGG 779
Query 774 ACCTGTGTTTAGAGTCATGCTGAGGGTTCACCGTGGGAAGCTACATGAGGACAGGAACTA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ACCTGTGTTTAGAGTCATGCTGAGGGTTCACCGTGGGAAGCTACATGAGGACAGGAACTA 839
Query 834 TGGTTTTGTCACGCACTGTAATCTGTGTGGTCATACTCAAACATTGAGATGGGATGAACT 893
|||||||||||||||||||||||| ||||| ||| |||| |||||||||| ||||||||
Sbjct 840 TGGTTTTGTCACGCACTGTAATCTATGTGGCCATTCTCATACATTGAGATTCGATGAACT 899
Query 894 TGGTTTGATGGGATGTCCCTGCAGTGATACAAAGGCTTCTTCTTCACTAGTTGTGTCAGG 953
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 900 TGGTTTGATGGGATGTCCCTGCAGTGATACAAAGGCTTCTTCTTCACTGGTTGTGTCAGG 959
Query 954 ACCAATGTGGCTTGGACCGCTTCATGATGCATCGTATGTTACGGAAATGCTGGAATTGGC 1013
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 960 ACCAATGTGGCTCGGACCGCTTCATGATGCATCCTATGTTACGGAAATGCTGGAATTGGC 1019
Query 1014 AAAGGAATGGGGATGGGTCAGTGAAGACACTGGCATGGATCTAGAGAAGCTTCTCAGCAT 1073
|||||||||||||||||||||||||| ||||||||||||||| || ||||||||||| ||
Sbjct 1020 AAAGGAATGGGGATGGGTCAGTGAAGGCACTGGCATGGATCTGGACAAGCTTCTCAGTAT 1079
Query 1074 AATTATCGAAGAGAGTGATCCAAGACTACCCCCTGGATACACCAAAATGGATGAGATGGC 1133
||| || ||||| |||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 1080 AATGATTGAAGAAAGTGATCCCAGACTACCACCTGGATACACAAAAATGGATGAGATGGC 1139
Query 1134 CAGCCGGGCAAAGATGAACTCACCTCCGTTGAAGAAGATGATGAGTGCACTAGTTAAGGA 1193
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GAGCCGTGCGAAGATGAACTCACCTCCGTTGAAGAAGATGATGAGTGCACTAGTTAAGGA 1199
Query 1194 GGGATACGCTGTTAGTAGATCTCACATTATCCCCAATGCTCTCAAAACAGATTGTCCCAT 1253
||| ||||||| ||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1200 GGGTTACGCTGCTAGCAGATCTCACATTATTCCCAATGCTCTTAAAACAGATTGTCCCAT 1259
Query 1254 GTCACATTTCGTAAGGATTGCCAAAGATAATTTGCAGAGTTAA 1296
||| ||||| || ||||||||||| || |||||||| ||||||
Sbjct 1260 GTCCCATTTTGTTAGGATTGCCAAGGAAAATTTGCATAGTTAA 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63754692150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5