BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898581
Length=450
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56380.1 | Symbols: ARR17, RR17 | response regulator 17 | ch... 638 0.0
> AT3G56380.1 | Symbols: ARR17, RR17 | response regulator 17 |
chr3:20905480-20906368 FORWARD LENGTH=462
Length=462
Score = 638 bits (345), Expect = 0.0
Identities = 426/463 (92%), Gaps = 14/463 (3%)
Strand=Plus/Plus
Query 1 ATGAATAACGGATGTGGAAGTGGAAGTGAGTCTTGTTTATCGTCAATGGAGGAGGAGCTT 60
|||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAATAAGGGCTGTGGAAGTGGAAGTGATTCTTGTTTATCGTCAATGGAGGAGGAGCTT 60
Query 61 CATGTTTTAGCAGTAGATGATAATCTAATTGACCGTAAA-TTCCTTGAAAGAATCCTCAA 119
||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||
Sbjct 61 CATGTTTTAGCAGTAGATGATAATCTAATTGACCGTAAACTT-GTTGAGAGAATCCTCAA 119
Query 120 GATCTCTTCTTGCAAAGTGACAACAGCAGAAAATGGGCTTAGAGCATTGGAGTACTTAGG 179
|||||||||||||||||||||||| |||||||| ||||||||||| || || || |||||
Sbjct 120 GATCTCTTCTTGCAAAGTGACAACTGCAGAAAACGGGCTTAGAGCTTTAGAATATTTAGG 179
Query 180 CTTGGGAGATCCACAAC--A--GA--C-----C-AATGTAATGAAGGTGAATCTTATCAT 227
||||||||||||||||| | || | | |||||||||||||||||||| |||||
Sbjct 180 CTTGGGAGATCCACAACAGACTGATTCATTGACTAATGTAATGAAGGTGAATCTCATCAT 239
Query 228 CACTGATTATTGTATGCCAGGAATGACAGGTTTTGAGCTTCTGAAGAAAGTGAAGGAATC 287
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 240 CACTGATTATTGTATGCCAGGAATGACAGGTTTTGAGCTGCTTAAGAAAGTGAAGGAATC 299
Query 288 ATCGAATCTAAAGGAAGTACCTGTTGTGATATTGTCTTCAGAGAACATTCCTACTCGCAT 347
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 ATCGAATCTAAAGGAAGTACCTGTTGTGATATTGTCTTCAGAGAACATTCCTACCCGCAT 359
Query 348 CAACAAATGCTTAGCTAGCGGTGCACAGATGTTTATGCAGAAGCCACTGAAATTATCTGA 407
||||||||| ||||| || || |||||||||||||||||||||||||||||| |||||||
Sbjct 360 CAACAAATGTTTAGCGAGTGGAGCACAGATGTTTATGCAGAAGCCACTGAAACTATCTGA 419
Query 408 TGTTGAGAAACTGAAATGTCATCTTTTAAACTGCAGAAGCTGA 450
||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 420 TGTAGAGAAACTGAAATGCCATCTTTTAAATTGCAGAAGCTGA 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21414061074
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5