BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg898582

Length=807
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G56390.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   412    2e-114


> AT3G56390.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: WRKY DNA-binding protein 55 (TAIR:AT2G40740.2); Has 
12 Blast hits to 12 proteins in 2 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; 
Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20907354-20907697 
FORWARD LENGTH=344
Length=344

 Score =  412 bits (223),  Expect = 2e-114
 Identities = 308/346 (89%), Gaps = 17/346 (5%)
 Strand=Plus/Plus

Query  1    ATGGAGGAG--A-TAATGTCAATGATATTCAACGGAATCAATCTGGTTAAGGAGCTAGAG  57
            |||||||||  | |||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct  1    ATGGAGGAGATATTAATGTCAATGATATTCAACGGAATCAATCTGGTCAAGGAGCTTGAG  60

Query  58   TTCAGCTTATCATCACAAGAGTCACCAGAATCAGATTTGTCGAGTTATCTAAGCTCGATC  117
            ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct  61   TTCAGTTTATCATCACAAGAGTCACCAGAATCAGATTTGTCGAGTTCTCTAAGCTCGATA  120

Query  118  TCCACTCTATTCGGAGACGCCAACGAGCGGCTGAAAATCCTACTTGCGTGGAGGAACTCT  177
            ||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct  121  TCCACTCTATTCGGAGACGTCAACGAGCGGCTGAAAACCCTACTAGCGTGGAGGAACTCT  180

Query  178  TTGGCACAGTACCAGCCTGAACCGGAACCGGTTCCAATGTTTGATAT-AC-------CGA  229
             || |||||||||||||||||||||||||||||  |||||| ||||| ||       |||
Sbjct  181  CTGTCACAGTACCAGCCTGAACCGGAACCGGTTTTAATGTTGGATATGACGAATTGACGA  240

Query  230  TGCAGAATGATCAGAGTCTGATGCAGGACCACTGGTTTAACTTTAGGTATCCAGTGATGC  289
            |||||| ||| | |||||||||||||||||||||||| || |   | |||||||| ||||
Sbjct  241  TGCAGATTGAACCGAGTCTGATGCAGGACCACTGGTT-AA-T---G-TATCCAGTTATGC  294

Query  290  AGACAGTGGAGGGTAATGCTACCTCAAGACCAAGGCATCAAAGAAG  335
            ||||||||||||||||||  ||||| ||||||||||||| ||||||
Sbjct  295  AGACAGTGGAGGGTAATGAAACCTCGAGACCAAGGCATCGAAGAAG  340



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39283102954


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5