BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg898607

Length=759
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G56670.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   462    2e-129
  AT5G33405.1 | Symbols:  | pseudogene, hypothetical protein | ch...   196    2e-49 


> AT3G56670.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: F-box and associated interaction domains-containing 
protein (TAIR:AT1G32420.1); Has 58 Blast hits to 47 proteins 
in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr3:20989035-20989995 REVERSE LENGTH=702
Length=702

 Score =  462 bits (250),  Expect = 2e-129
 Identities = 355/406 (87%), Gaps = 5/406 (1%)
 Strand=Plus/Plus

Query  1    ATGATGAAGAGAGGACGCGAAGAGAATTGCCATGAGACCTCACCCTCGCCGAAACGACTT  60
            ||||||| |||||||||| |||||||| || | ||||||||||||||||||| || ||||
Sbjct  1    ATGATGACGAGAGGACGCAAAGAGAATAGCAACGAGACCTCACCCTCGCCGACACTACTT  60

Query  61   CTTCACGGCGGAGTTATTGATATTCCTCTGGAT-CTGACCGTAGAGAT-ACTaaaaaaaC  118
            ||||||||||||||||| ||||| |||||| || ||||| || ||| | |||||||| ||
Sbjct  61   CTTCACGGCGGAGTTATCGATATCCCTCTGAATACTGACAGTGGAG-TGACTAAAAACAC  119

Query  119  TCCCGGCGAAAT--CTCTAGTGAGGTTCCAATGTGTGTCGAAGCTGTGGTCATCCATTAT  176
            ||||||||||||  | ||| |||||||| ||| ||| |||||||||||||||||||||||
Sbjct  120  TCCCGGCGAAATCGCACTATTGAGGTTCAAATCTGTCTCGAAGCTGTGGTCATCCATTAT  179

Query  177  CAGCAGTCGTAGAGACTTCATAGAGTCGATAGTCACTCGATCTCTGACTCAGCCTCCTCG  236
            |||||||||||||||||||||||| |||||||| ||||||| | ||||||||||||||| 
Sbjct  180  CAGCAGTCGTAGAGACTTCATAGAATCGATAGTGACTCGATTTTTGACTCAGCCTCCTCA  239

Query  237  TGATGCCCATTTCATCTTCGACGTCGCTCCAGGCCCCTACGTGGAATGTTTCTTAGCCTT  296
            |||||||||||||||||||| | ||| | ||||||| ||||||||||||||||||| |||
Sbjct  240  TGATGCCCATTTCATCTTCGGCTTCGATTCAGGCCCTTACGTGGAATGTTTCTTAGGCTT  299

Query  297  GTCGTCTACTTGCCCTCCAAATACTGACATAGAAGCAGAAATATCAATGCCTGGGAGATT  356
             ||||||||||  ||||||||||| ||||||||||||| | ||||||| ||||||||| |
Sbjct  300  ATCGTCTACTTATCCTCCAAATACGGACATAGAAGCAGTACTATCAATCCCTGGGAGAAT  359

Query  357  GGGGCAATACGTTCGCGGCTTGATTTGTTGTTTCTCTGGTTTGAAG  402
            || ||| || |||  ||| ||||| |||||||| |||||||| |||
Sbjct  360  GGCGCAGTATGTTTACGGTTTGATGTGTTGTTTGTCTGGTTTTAAG  405


 Score =  279 bits (151),  Expect = 2e-74
 Identities = 215/245 (88%), Gaps = 8/245 (3%)
 Strand=Plus/Plus

Query  504  TTTGAAGGATGCTGAGAAGGAGACACAAGGATGGTCCAGGATTTTCTTTTACGAGATGCA  563
            ||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  399  TTTTAAGGATGCTAAGAAGGAGACACAAGGATGGTCCAGGATTTTCTTTCACGAGATGCA  458

Query  564  TGGCTTTTCAAATTGGCGCCTCTTGGGTGCTACTCGTGGTGGTGAGATCGTTTTTGGCGA  623
            ||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| | |
Sbjct  459  TGGCTTTTCAAATTGGCGCATCTTGGGTGCTACTTGTGGTGGTGAGATCCTTTTTGCCAA  518

Query  624  GTTGAGGTACAGGC-TCTATAAC---GAA-A-A-GTTGTTACGTGTCTTATATTATGATC  676
            || || |||| | | ||||| ||   ||| | | | ||||| |||||||||||||||| |
Sbjct  519  GTGGATGTACTG-CATCTATCACTATGAAGACAAGCTGTTATGTGTCTTATATTATGAGC  577

Query  677  CGAAGCTAAACAGTATGAGGTATGTTGACCTCGAAGGTACTTTACCCAAGGATAGAAGGC  736
            |||||| |||||||||||||  ||||||| |||||||||||||||| || |||| |||||
Sbjct  578  CGAAGCGAAACAGTATGAGGGGTGTTGACGTCGAAGGTACTTTACCTAATGATACAAGGC  637

Query  737  GTTAC  741
            |||||
Sbjct  638  GTTAC  642


> AT5G33405.1 | Symbols:  | pseudogene, hypothetical protein | 
chr5:12683327-12684600 FORWARD LENGTH=1274
Length=1274

 Score =  196 bits (106),  Expect = 2e-49
 Identities = 191/230 (83%), Gaps = 13/230 (6%)
 Strand=Plus/Plus

Query  2    TGATGAAGAGAGGACGCGAAG-AGAATTGCCATGAGACCTCACCCTCGCCGAAACGACTT  60
            |||||||||||  ||||| || ||||| |||   ||||||||| ||||  ||||||||||
Sbjct  111  TGATGAAGAGAAAACGCG-AGAAGAATAGCCGCAAGACCTCACGCTCGATGAAACGACTT  169

Query  61   CTTCACGGCGGAGTTAT-TGATATTCCTCTGGATCTGACCGTAGAGATACTaaaaaaaCT  119
            |||||| || || |||| | |||| ||||  |||||||| || ||| |||||||||||||
Sbjct  170  CTTCACAGCAGATTTATCT-ATATCCCTCAAGATCTGACGGTGGAGGTACTAAAAAAACT  228

Query  120  CCCGGCGAAATCTCTAGTGAGGTTCCAATGTGTGTCGAAGCTGTGGTCATCCATTATCAG  179
            ||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||
Sbjct  229  CCCGGCGAAATCTCTAGTGAGGTTCCAGTGTGTCTCGAAGCTGTGGTCTTCAATTATCAG  288

Query  180  CAGTCGTAGAGACTTCATAGAGTCGA-TA--GTCACTCGATCTCTGACTC  226
            ||| |  | ||  | ||||||||||| ||  || ||||||||| | ||||
Sbjct  289  CAGAC--A-AG--T-CATAGAGTCGAATATAGTGACTCGATCTTTAACTC  332



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36871863898


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5