BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898661
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57200.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2333 0.0
AT2G41451.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1064 0.0
> AT3G57200.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G41451.1);
Has 94 Blast hits to 94 proteins in 31 species: Archae - 0;
Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 77; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr3:21169265-21172316
FORWARD LENGTH=1906
Length=1906
Score = 2333 bits (1263), Expect = 0.0
Identities = 1374/1428 (96%), Gaps = 5/1428 (0%)
Strand=Plus/Plus
Query 49 tct-tcttcttcAACATCATCGTCATCTTACTCGCGTCTTTTCTTGCTCGTGACGCTTCT 107
||| |||||||| | || || ||||||| ||||||||||||| |||||||||| |||||
Sbjct 190 TCTGTCTTCTTCTCCTTCTTCATCATCTTCCTCGCGTCTTTTCCTGCTCGTGACCCTTCT 249
Query 108 TCCTCTCTCTCTCGCCTGTCTCGCCTTCGTTCTCCAATGGCGTGGCGGACTCGACGACCC 167
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 250 TCCTCTCTCTCTCGCCTGTTTCGCCTTCGTTCTCCAATGGCGTGGCGGTCTCGACGACCC 309
Query 168 GGTTACGCGTTGGTCAATAGATCATCACGAGTTTCCCGGAATGGTTACAACCCAAGAGAA 227
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 CGTTACGCATTGGTCAATAGATCATCACGAGTTTCCCGGAATGGTTACAACCCAAGAGAA 369
Query 228 ACGGTCCT-TGCGTCGTTCAGTTTCTGATTCGGGTTGCGTTGATCTTCTAGGTCAGAGTC 286
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 ACGGT-CTCTGCGTCGTTCAGTTTCTGATTCGGGTTGCGTTGATCTTCTAGGTCAGAGTC 428
Query 287 GTGCCCCTTCGTTTCCTTATTTCCGGAATTGGAAATTTGATTACGACTCGGATCTGAAAC 346
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 429 GTTCCCCTTCGTTTCCTTATTTCCGGAATTGGAAATTTGATTACCACTCGGATCTGAAAC 488
Query 347 CTAGGATATGCATTACAACAAGCACTTCTGCTGGCTTAGAGCAAACACTGCCATGGATTT 406
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 489 CCAGGATATGCATTACAACAAGCACTTCTGCTGGCTTAGAGCAAACATTGCCATGGATTT 548
Query 407 ACTTTCACAAAGTTATTGGAGTTTCAACATTTTATCTATTTGTTGAGGGGAAGGCTGCAT 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 ACTTTCACAAAGTTATTGGAGTTTCAACATTTTATCTATTTGTTGAGGGGAAGGCTGCAT 608
Query 467 CTCCAAATGTGTCTCGAGTTTTGGAGACCATCCCTGGTGTAAAAGTTATACACAGGACAA 526
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 609 CTCCAAATGTGTCTCGAGTTTTGGAGACCATCCCTGGTGTAAAAGTTATTTACAGGACAA 668
Query 527 AAGAGTTGGAAGAAAAACAGGCTAAAAGCCGGATTTGGAATGAGACTTGGCTGTCGAGCT 586
| || || |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 669 AGGAATTAGAAGAAAAACAGGCTAAAAGCCGGATATGGAATGAGACTTGGCTGTCGAGCT 728
Query 587 TCTTCTACAAACCGTGTAACTATGAATTATTCGTGAAACAGTCCTTGAACATGGAAATGG 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 TCTTCTACAAACCGTGTAACTATGAATTATTCGTGAAACAGTCCTTGAACATGGAAATGG 788
Query 647 CAATCACCATGGCTCAGGATGCTGGTATGGAATGGATAATTCATCTTGACACCGATGAGC 706
||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 789 CAATCACCATGGCTCAGGACGCTGGTATGGAATGGATCATTCATCTTGACACTGATGAGC 848
Query 707 TTATACATCCTTCTGGAACCCATGAATATTCTTTACGGAAGTTGCTGGGAAATATTTCTG 766
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 849 TTATACATCCTTCTGGAACCCATGAATATTCTTTACGCAAGTTGCTGGGAAATATTTCTG 908
Query 767 CAGACGTAGATATAGTTATCTTTCCAAATTATGAGAGCAGCGTTGAGCGAGATGATATCA 826
||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 909 CAGACGTGGATGTAGTTATCTTTCCAAATTATGAGAGCAGCGTTGAGAGAGATGATATCA 968
Query 827 GGGAACCTTTTAGCGAGGTATCAATGTTCAAGAAGAATTATGACCATCTTCTGAGAGATG 886
|||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 969 GGGAACCTTTCAGTGAGGTATCAATGTTCAAGAAGAATTTTGACCATCTTCTGAGAGATG 1028
Query 887 TCTACTTTGGAAACTATAAAGACGCCACTCGTGGAAATCCAAACTATTTCTTAACCTATG 946
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1029 TCTACTTTGGAAACTATAAAGATGCCACTCGTGGAAATCCAAACTATTTCTTAACCTATG 1088
Query 947 GAAATGGGAAAGCTGCTGCCCGTGTTCAGGACCATCTTCGTCCCAATGGTGCTCATCGAT 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 GAAATGGGAAAGCTGCTGCCCGTGTTCAGGACCATCTTCGTCCCAATGGTGCTCATCGAT 1148
Query 1007 GGCACAACTACAGAAAGAGTCCAAATGAGGTCAAACTAGAAGAAGCTGCCGTGCTGCACT 1066
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1149 GGCACAACTACAGAAAGAGTCCAAATGAGGTCAAACTTGAAGAAGCTGCCGTGCTGCACT 1208
Query 1067 ACACTTATCCCAGATTTTCAGATCTTACTTCAAGACGTGATCGTTGTGGCTGTAAGCCCA 1126
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 ATACTTATCCCAGATTTTCAGATCTTACTTCAAGACGTGATCGTTGTGGCTGTAAGCCCA 1268
Query 1127 CTAAAGTGGATGTCAAGAGATGTTTCATGCTGGAGTTTGACAGAGCTGCATTTATTATTG 1186
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1269 CTAAAGTGGATGTCAAGAGATGTTTCATGCTAGAGTTTGACAGAGCTGCATTTATTATTG 1328
Query 1187 CTTCAACCGCGAGTTCAGAGGAAATGCTTCAATGGTACAGAGAGCATGTTGTGTGGACTG 1246
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1329 CTTCAACAGCGAGTTCAGAGGAAATGCTGCAATGGTACAGAGAGCATGTTGTGTGGACTG 1388
Query 1247 ATGAAAAATTGAAGTTGAAACTCATTAGGAAGGGAATTCTGACCCGCATTTATGCCCCCA 1306
||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||
Sbjct 1389 ATGAAAAATTGAAGTTGAAACTCCTTAGGAAGGGAATTCTAACCCGCATTTATGCTCCCA 1448
Query 1307 TGGTTATAATCCAAGAGCTAAGAGAAGCGGGTGTTTTTAGCTCTGTGGTAATCGCAGCTC 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 TGGTTATAATCCAAGAGCTAAGAGAAGCGGGTGTTTTTAGCTCTGTGGTAATCGCAGCTC 1508
Query 1367 ACATGTCTCTCT-CGAACAACCCTTCAACTGCTGATTCAACATCAGGCATTACCCGAGAA 1425
||| ||||| || |||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1509 ACAAGTCTC-CTTCGAAGAACTCTTCAACTGCTGATTCGACATCAGGCATTACCCGAGAA 1567
Query 1426 TCATCTGAGGCAACTGGTAGGAGGAGGGTGTTGGAGTTCCATCTTGAT 1473
|||||| ||| |||||||| ||||||||||||||| ||||||||||||
Sbjct 1568 TCATCTCAGGAAACTGGTAAGAGGAGGGTGTTGGAATTCCATCTTGAT 1615
> AT2G41451.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G57200.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr2:17282899-17285361 FORWARD LENGTH=1511
Length=1511
Score = 1064 bits (576), Expect = 0.0
Identities = 1088/1325 (82%), Gaps = 75/1325 (6%)
Strand=Plus/Plus
Query 88 TTCTTGCTCGTGACGC-TTCTTCCTCTCT-CTCTCGCCTGTC-TCGCCTTCGTTCTCCAA 144
||||| ||| | || | |||||||||| | || | ||||| | | |||||| | ||||||
Sbjct 92 TTCTTACTCATCAC-CTTTCTTCCTCTTTCCT-TGGCCTG-CTTGGCCTTCCTCCTCCAA 148
Query 145 TGGCGTGGCGGACTCGACGA-CCCGGTTACGC-GTTGG-TCAATAGATCATC-A-CGAGT 199
||||| ||||| || |||| || ||||||| | ||| | || ||| | | | | |
Sbjct 149 TGGCGAAGCGGAGTCAACGATTCC-GTTACGCAG-TGGTTTGAT-GAT-AACTATC-CG- 202
Query 200 TTCCC-GGAATGGTTAC-AAC-CCAAGAGAAACGGTCCTTGCGTCGTTCAGTTTCTGATT 256
||||| ||||||| || | || ||||||| | || | || ||| | ||||||||
Sbjct 203 TTCCCAGGAATGGCCACTGTCTCC--GAGAAAC-G---TT-C-TC-TTC-G-TTCTGATT 251
Query 257 CGGGTTGCGTTGATCTTCTAGGTCAGAGTCGTGCCCCTTCGTTTCCTTATTTCCGGA-AT 315
|| | |||||| |||||| |||||||| ||| | | ||||||||||| ||| || ||
Sbjct 252 CGAGCTGCGTTTCTCTTCTGGGTCAGAGCCGTACGCAAGCGTTTCCTTATCTCC-GAGAT 310
Query 316 TGGAAATTTGATTACGA-CTCGGATCTGAAACCTAGGATATGCATTACAACAAGCACTTC 374
| ||| ||||| || | | | ||||| |||||||||||||| || || || ||||||||
Sbjct 311 TTGAAGCTTGATCACAAGC-CCGATCTTAAACCTAGGATATGTATAACGACGAGCACTTC 369
Query 375 TGCTGGCTTAGAGCAAACACTGCCATGGAT-TTACTTTCACAAAGTTATTGGAGTTTCAA 433
|||||| |||||||| ||| |||||||||| || || |||||| || ||||||||| ||
Sbjct 370 TGCTGGGTTAGAGCAGACATTGCCATGGATATT-CTATCACAAGGTCATTGGAGTTGAAA 428
Query 434 CATTTTATCTATTTGTTGAGGGGAAGGCTGCATCTCCAAATGTGTCTCGAGTTTTGGAGA 493
| ||||||||||||||||| || | ||||| || ||||| || ||||||||||||||||
Sbjct 429 CTTTTTATCTATTTGTTGAAGGCACTGCTGCTTCCCCAAACGTTTCTCGAGTTTTGGAGA 488
Query 494 CCATCCCTGGTGTAAAAGTTATACACAGGACAAAAGAGTTGGAAGAAAAACAGGCTAAAA 553
| |||||||||||||| |||||| ||||||||| |||||| |||||| |||| |||||||
Sbjct 489 CAATCCCTGGTGTAAATGTTATATACAGGACAAGAGAGTTAGAAGAAGAACAAGCTAAAA 548
Query 554 GCCGGATTTGGAATGAGACTTGGCTGTCG-AGCTTCTTCTACAAACCGTGTAACTATGAA 612
||||||| ||||||||||||||| || | || || ||||||||||||||||| || |||
Sbjct 549 GCCGGATATGGAATGAGACTTGGTTGGAGAAG-TTTTTCTACAAACCGTGTAATTACGAA 607
Query 613 TTATTCGTGAAACAGTCCTTGAACATGGAAATGGCAATCACCATGGCTCA-GGATGCTGG 671
|||||||| ||||| |||||| ||||||||||| ||||||||||| | |||||||||
Sbjct 608 TTATTCGTCAAACAAAACTTGAATATGGAAATGGCTATCACCATGGC-AAGGGATGCTGG 666
Query 672 TATGGAATGGATAATTCATCTTGACACCGATGAGCTTATACATCCTTCTGGAACCCATGA 731
|||||| |||||| | |||||||| || ||||||||| |||||||||||||||||| |||
Sbjct 667 TATGGACTGGATACTGCATCTTGATACTGATGAGCTTGTACATCCTTCTGGAACCCGTGA 726
Query 732 ATATT-CTTTACGGAAGTTGCTGGGAAATATTTCTGCAGACGTAGAT-ATAGTTATCTTT 789
||||| ||| | | || ||||| || || || ||||||| || ||| | ||||||||||
Sbjct 727 ATATTCCTTGA-GAAATTTGCTCAGAGATGTTCCTGCAGATGTGGATGA-AGTTATCTTT 784
Query 790 CCAAATTATGAGAGCAGCGTTGAGCGAGATGATATCAGGGAACCTTTTAGC-GAGGTATC 848
||||||| |||||||||||||||||||||||||||| ||||||||| | | || |||||
Sbjct 785 ACAAATTACGAGAGCAGCGTTGAGCGAGATGATATCAAGGAACCTTTCA-CTGAAGTATC 843
Query 849 AATGTTCAAGAAGAATTATGACCATCTT-CTGAGAGATGTCTACTTTGGAAACTATAAAG 907
||||||||||||||||| | | |||||| || ||||| || |||| ||||||||||||||
Sbjct 844 AATGTTCAAGAAGAATTTTAAACATCTTCCT-AGAGAAGTTTACTATGGAAACTATAAAG 902
Query 908 ACGCCACTCGTGGAAATCCAAACTA-TTTCTTAACCTATGGAAATGGGAAAGCTGCTGCC 966
| || |||||||| ||||||||||| |||||| ||||||| |||||||||| | |||||
Sbjct 903 AGGCAACTCGTGGCAATCCAAACTATTTTCTT-ACCTATGCAAATGGGAAATCCGCTGCT 961
Query 967 CGTG-TTCAGGACCATCTTCGTCCCAATGGTGCTCATCGATGGCACAACTAC-AGAAAG- 1023
|| | |||| ||||||||||| ||||||||||||||||| |||||||||||| || | |
Sbjct 962 CG-GATTCAAGACCATCTTCGGCCCAATGGTGCTCATCGCTGGCACAACTACAAG-ACGT 1019
Query 1024 AGTCC-AA-AT-GAGGTCAAACTAGAAGAAGCTGCCG-TGCTGCACTACACTTATC-CCA 1078
| ||| || || ||| ||||||| ||||||| || | || ||||||||||| | | |
Sbjct 1020 A-TCCAAACATCAAGG---AACTAGACGAAGCTG-CGATTCTTCACTACACTTA-CTCGA 1073
Query 1079 GATTTTCAGATCTTACTTCAAGACGTGATCGTTGTGGCTGTAAGCCCACTAAAGTGGATG 1138
|||||||||||||||||||||||||||||| |||||||| || || || ||| ||||
Sbjct 1074 AATTTTCAGATCTTACTTCAAGACGTGATCGATGTGGCTGCAAACCAACAAAAAAAGATG 1133
Query 1139 TCAAGAGATGTTTCATGCTGGAGTTTGACAGAGCTGCATTTATTATTGCTTCAACCGCGA 1198
||||||||||||||||||| || ||||||||||| ||||| || ||||||||||| | |
Sbjct 1134 TCAAGAGATGTTTCATGCTAGACTTTGACAGAGCCGCATTCATCATTGCTTCAACTTCAA 1193
Query 1199 GTTCAGAGGAAATGCTTCAATGGTACAGAGA--GCATGTTGTGTGGACTGATGAAAAATT 1256
||||||||||||||| |||||||||||||| | | ||||| |||||||| || || ||
Sbjct 1194 CTTCAGAGGAAATGCTCCAATGGTACAGAGAAAG-A-GTTGTATGGACTGACGATAATTT 1251
Query 1257 GAAGTTGAAACT-CATTAGGAAGGGAATTCTGACCCGCATTTATGCCCCCATGGTTATAA 1315
|| | ||||| | ||||||| ||||||||||| ||||||||||| || ||||||||||
Sbjct 1252 GATCCTAAAACTTC-TTAGGAAAGGAATTCTGACTCGCATTTATGCACCAATGGTTATAA 1310
Query 1316 TCCAAGAGCTAAGAGAAGCGGGTGTTTTTAGCTCTGTGGTAA-TCGCAGCTCACATGTCT 1374
||||||||||||||||||| |||||||| ||||| ||||||| | ||||||| ||||||
Sbjct 1311 TCCAAGAGCTAAGAGAAGCCGGTGTTTTCAGCTCAGTGGTAACTT-CAGCTCATATGTCT 1369
Query 1375 CTCTC 1379
|||||
Sbjct 1370 CTCTC 1374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72941391885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5