BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898662
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57210.1 | Symbols: | Protein of unknown function (DUF626) ... 612 2e-174
> AT3G57210.1 | Symbols: | Protein of unknown function (DUF626)
| chr3:21172827-21174172 REVERSE LENGTH=1231
Length=1231
Score = 612 bits (331), Expect = 2e-174
Identities = 553/653 (85%), Gaps = 43/653 (7%)
Strand=Plus/Plus
Query 11 ATCAGGGGACAAACTTAGATATCTCTCACGTTAAGAGATACAACATGACTCTGACT-CT- 68
||||||||||||||||| | |||||||||||||||||||||||| ||||||| || ||
Sbjct 128 ATCAGGGGACAAACTTAAAGCTCTCTCACGTTAAGAGATACAACAGGACTCTGGCTGCTG 187
Query 69 -TGC-TGCCTCTTACTACATTACTTTGGTTGCAATGGATCCATCTAGTGGAAAAC-TTGT 125
||| || || || |||||||||||||||||||||| | ||||||||||||| | || |
Sbjct 188 GTGCTTG-CTGTTTCTACATTACTTTGGTTGCAATGCAGCCATCTAGTGGAAGGCGTT-T 245
Query 126 TCA-TTTTCAGACTAACGTTAATGAAGAATG-TTGTGGCAAGTTTGCTTTGACCTCCTTT 183
| | |||||||||| |||| |||||||| | ||||||| | ||| |||||||||||||
Sbjct 246 T-ACTTTTCAGACTTCCGTTTATGAAGAA-GCTTGTGGCCGGCTTGTTTTGACCTCCTTT 303
Query 184 ATTGCT---AGACCTCGTCGAGGCCCTAAAGC--TACAGA-TTCGTCTGG-AAGAAG-AT 235
|||||| |||| ||||| ||| | || | || | | |||| ||| ||| || ||
Sbjct 304 ATTGCTGAAAGACGTCGTCCAGGGAC--AATCATTA-AAACGTCGT-TGGAAAG-AGAAT 358
Query 236 TCTGTCC-CATGGGTAGCTTGCCTGAGTTCCCGCAGGAGAATCCTTTCGAAAACGA-AAA 293
||| || |||||||||||||||||||||||||| |||||| |||||||||||| | |||
Sbjct 359 TCT-ACCGCATGGGTAGCTTGCCTGAGTTCCCGCTGGAGAACCCTTTCGAAAAC-AGAAA 416
Query 294 CCGATTTTACTTGGT-G--GATGAATCAGAGCTG-GAAGACAATGACTGGATTCGTCTGT 349
|||||||||| |||| | ||||||||||||||| | || ||||||||||||||||||||
Sbjct 417 CCGATTTTACGTGGTGGATGATGAATCAGAGCTGCG-AGCCAATGACTGGATTCGTCTGT 475
Query 350 ATTTGGAACTTTCTGTTGCCAGATCTGATTGGACCAGCAAGGATCATGATCTTTCCCACT 409
|| |||||||||||||||||| ||||||| |||||| || |||||||||||||||| ||
Sbjct 476 ATCTGGAACTTTCTGTTGCCATATCTGATAGGACCACCACGGATCATGATCTTTCCGGCT 535
Query 410 TGAAGATTGTG-AATGTAGCCATAGAAACTATGGAGCCACCGAGTGAGTCCTCTCTCACT 468
||| ||||||| | |||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 536 TGAGGATTGTGTCA-GTAGCCATTCAAACTATGGAGCCACCCAGTGAGTCCTCTCTCACT 594
Query 469 GCCAAAAATGCAACTGTCTACATAAGGTACATTGACTCTTGTGTGGCTCGCTGTGGTCAG 528
|| || ||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 595 GCTAAGAATGCAACTGTCTACATAAGGTACATTGACTTTTGTAAGGCTCGCTGTGGTCAG 654
Query 529 AAATTTGATCGCATTGCTGTAGTTAGAAGAAGA--TTCAATGAG-CTTACGGGATGCTTC 585
|| |||||||||| |||||||||||||||| | ||||||||| || |||||||||||
Sbjct 655 AACCTTGATCGCATAGCTGTAGTTAGAAGAA-ACCTTCAATGAGACT-ACGGGATGCTTT 712
Query 586 ATTCTCGACGGTTGGAATCAGAGCTCAGAGATTATTCC-AGAAAAGCAGAGCT 637
| |||||||||||||||||| |||||||| || || || | ||||| || |||
Sbjct 713 AGTCTCGACGGTTGGAATCAAAGCTCAGATATCATACCCA-AAAAGAAG-GCT 763
Score = 169 bits (91), Expect = 6e-41
Identities = 135/155 (87%), Gaps = 8/155 (5%)
Strand=Plus/Plus
Query 768 GCGTTTAATTCGCAAATCACGGC-GCACATGGCGGGGGCGCTGTGCTTACACAAACGATG 826
||||||||||| ||||||||||| | | ||||| || | || | || ||||||| |||
Sbjct 787 GCGTTTAATTCACAAATCACGGCAG-ATATGGC-GGCG-GC-G-GC--GCACAAACCATG 839
Query 827 GTGTTGGCTTGGCTCATCGTCTTTGCAAAACAAGATCCATAGAATCAGCCATCAGAAAGT 886
| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 840 GCGTTGGCTTGGCTCATCGTCTTCGCAAAACAAGATCCATAGAATCAGCCATCCGAAAGT 899
Query 887 ATACCCAAAAAGGGTATGACTCTGATTGTGAAACT 921
|||||||||||||||| || ||||| ||||||||
Sbjct 900 ATACCCAAAAAGGGTACGAGTCTGAGCGTGAAACT 934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5