BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg898671

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G57280.1 | Symbols:  | Transmembrane proteins 14C | chr3:211...   255    1e-67


> AT3G57280.1 | Symbols:  | Transmembrane proteins 14C | chr3:21193780-21195716 
FORWARD LENGTH=1030
Length=1030

 Score =  255 bits (138),  Expect = 1e-67
 Identities = 155/163 (95%), Gaps = 1/163 (1%)
 Strand=Plus/Plus

Query  154  CAGTCTTTTGTAGTTAGAAGCGTTGATGGGAATAGCTCTGAAACACCGGCTTCTCTAAGC  213
            |||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  277  CAGTCTTTTGTAGTTAAAAGTGTTGATGGGAATAGCTCTGAAACACCAGCTTCTCTAAGC  336

Query  214  TATACAGCTGAGGTTTCAAAACCTATTGTTGAGAAAACATC-AAACCGTATTCCACTGTG  272
            |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| 
Sbjct  337  TATACAGCTGAGGTTTCAAAACCTGTTGTTGAGAAAACATCCAAACCGTATTCCACTGTT  396

Query  273  GATGAAACTGCTACCAATAAAGAGATTATCACAGAGCCAGTAG  315
            |||||||||||||||||||||||||  ||||||||||||||||
Sbjct  397  GATGAAACTGCTACCAATAAAGAGAGCATCACAGAGCCAGTAG  439



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14627914959


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5