BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898723
Length=348
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57730.1 | Symbols: | Protein kinase superfamily protein | ... 84.2 7e-16
> AT3G57730.1 | Symbols: | Protein kinase superfamily protein
| chr3:21389964-21391562 REVERSE LENGTH=1599
Length=1599
Score = 84.2 bits (45), Expect = 7e-16
Identities = 210/286 (73%), Gaps = 26/286 (9%)
Strand=Plus/Plus
Query 43 TGGTTCTTAGACAACGGAAGCACAT-TTC-TCAAAGAGCTCATTGTTGGA-TGCAACGGT 99
||||||||||| || ||||| || ||| | ||||||||||| ||| || || || |||
Sbjct 252 TGGTTCTTAGAGAATGGAAG--TATCTTCTTAAAAGAGCTCATCGTT-GATTGTAATGGT 308
Query 100 AAAACAAATCCTATCCAAAGCTTTTCCTCTGACCAGA-TCCTCAAGGCCACAAATGGCTT 158
||| | | |||||| | |||||| | ||| ||||| || | || ||||| || | ||
Sbjct 309 AAATCCATTCCTATACGTAGCTTTACTTCTTCCCAGATTCGT-AAAGCCACCAA-GAATT 366
Query 159 T-GATCCAAGCCGCTATGTCA-C-G-AGTGACCTTTACTACACCTGGTTCACAGGTAG-C 213
| ||| |||| | | ||| | | | || | || ||||| |||| || |||| |
Sbjct 367 TCGATTTAAGCTGTTTTGT-AGCTGAAG-AAGGGTT-CTACATATGGTACAAAGGT-GTA 422
Query 214 ATCGAAGATAGATCTTACATGATCAAGATGTTTC-CTGAGGAGAAAGTCAGAGGAGATGG 272
|||||||||||||||||||||||||||| | ||| ||||| | ||||||| | | |
Sbjct 423 ATCGAAGATAGATCTTACATGATCAAGA-GATTCTCTGAGTATAAAGTCACTG-AT-TAC 479
Query 273 AGATGGAATTGGAGCTGTTTACAACGACATTGTCATATCTGCTCGT 318
||| | || || || ||||| || ||||||||| | |||||||||
Sbjct 480 AGA-GTAAGTG-AG--GTTTATAAAGACATTGTCTTGTCTGCTCGT 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16286750676
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5