BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898745
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57970.1 | Symbols: | Emsy N Terminus (ENT)/ plant Tudor-li... 1199 0.0
> AT3G57970.1 | Symbols: | Emsy N Terminus (ENT)/ plant Tudor-like
domains-containing protein | chr3:21465226-21466677 FORWARD
LENGTH=960
Length=960
Score = 1199 bits (649), Expect = 0.0
Identities = 865/967 (89%), Gaps = 23/967 (2%)
Strand=Plus/Plus
Query 5 CGGTGGTGAACTTTCTTGTGATCTTGATTCCGTTTGCTGTAGAATCAACTGATATACCGA 64
||||| || | |||||| |||||||||||||| ||| | ||||||||||||||||||||
Sbjct 6 CGGTGATGGATTTTCTTCTGATCTTGATTCCG-TTGAAGAAGAATCAACTGATATACCGA 64
Query 65 TCAATAATACAGAGACTATGCCGAGCTATAGCA-GTGACGATGCTATCCTGTTCAGCTCC 123
|||| || ||||||||| |||||||||||| | ||||||||| ||||||||||||| ||
Sbjct 65 TCAAGAACACAGAGACTGTGCCGAGCTATA-AAGGTGACGATGATATCCTGTTCAGCCCC 123
Query 124 ATGGACAAGAACGAGAAACTCAGGGA-ACTCCAGAGA-AAGGCTTACTTTTATGTTCTCC 181
|||||||||| | |||||||| | | |||||| || | |||||||| |||||||||||
Sbjct 124 TTGGACAAGAAAGTGAAACTCA-GCATGCTCCAG-GATAGGGCTTACTATTATGTTCTCC 181
Query 182 ATGCCTTCAGAGCAGAATCTCCTGCAATATCCAGC-CAAGGGATTAC-T-ATCGTGAAAG 238
||||||||| ||||||||||||||||||||||||| ||| ||| | | | ||| || |||
Sbjct 182 ATGCCTTCAAAGCAGAATCTCCTGCAATATCCAGCTCAA-GGA-T-CGTGATCATGCAAG 238
Query 239 AACTGATGAAAGAATTGAAAATTGACCT-CAACACTCACCAGAATTATGAGAATATAATC 297
||||| ||||||||||||| ||||| | ||| |||||||||| |||| | ||| ||||
Sbjct 239 AACTGTTGAAAGAATTGAAGATTGA-GTACAAGACTCACCAGACTTATCACAATGCAATC 297
Query 298 AAAGCTGATCCAATGGTCCAACAATTGAGGAATGTTTCGCTGGCGTCTGATGAGATGGAA 357
|||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||
Sbjct 298 GAAGCTGATCCAATGGTCCTGCAATTGAGGAATGTTTCATTGGCGTCTGATGAGAAGGAA 357
Query 358 ATGCAGAAACTTACTGCCGCTGAAGAACAGAAAATTACTGGCGTAGATGGCCAACCCCTG 417
|||||||||||||||| ||||||||||| | ||||||||||||||||||||||||| |||
Sbjct 358 ATGCAGAAACTTACTGTCGCTGAAGAACCGGAAATTACTGGCGTAGATGGCCAACCTCTG 417
Query 418 AGAATCCGTATCAAACCGAACAAGGACGAC-ATGGCCAAAATTCGAGACAGGGTTTTAGC 476
| |||||||||||||| ||||||||| ||| || |||||||||| |||||||||||||||
Sbjct 418 ATAATCCGTATCAAACTGAACAAGGATGACAAT-GCCAAAATTCAAGACAGGGTTTTAGC 476
Query 477 TCCTGCAAAGATAAAAGATGGAAAGGTTATAGCTCCTGAAAAGATACAAGACGAAGAGGC 536
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 477 TCCTGCAAAGATAAAAGATGGAAAGGTTTTAGCTCCTGCAAAGATACAAGACGAAGAGGC 536
Query 537 AAAACCGAGTTTTACTTCTGAGGATTCACCTGTC-CTAAGCTGGGGCCAGGTTTCTCCTG 595
||||||||||| ||||||||| |||||||||| | | | |||||||||||||||||||||
Sbjct 537 AAAACCGAGTTCTACTTCTGATGATTCACCTGACTCGA-GCTGGGGCCAGGTTTCTCCTG 595
Query 596 GGTCACTTGTTGGAAGACTGGTCAATATACAAATGCCTGACGAAGACGAGGACATTGAAT 655
|||| ||||||||||||| |||| |||||||||||||||||||||||||| |||||||||
Sbjct 596 GGTCTCTTGTTGGAAGACGGGTCCATATACAAATGCCTGACGAAGACGAGTACATTGAAT 655
Query 656 TCCTCATCACAGAGTATGACGCAAAAACGGAAACGCACCACCTGGTGAGTGCTTTCAGCA 715
||||||||||| ||||||||||||| ||||||||||||||| || |||||||||||||||
Sbjct 656 TCCTCATCACAAAGTATGACGCAAATACGGAAACGCACCACTTGTTGAGTGCTTTCAGCA 715
Query 716 ACAAGGATTATGAGGACCCGTGCAACTGGATTGATCTCAGACATGTTCCGGCAGAGGATA 775
| ||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||
Sbjct 716 ATAAGGATTATGAGGACCCATGCAACTGGGTTGATCTCAGACATGTTCAGGCAGAGGATA 775
Query 776 TGCAATGGCCAAAGAGCGATCCTGGATT-ACCAGTATGGAAACGC-CTTCTTAAACCAGG 833
|| |||||||| || | ||||| | ||| ||||||||||||| || || || ||||||||
Sbjct 776 TGAAATGGCCAGAGGGAGATCCAG-ATTTACCAGTATGGAAATGCTCTCCT-AAACCAGG 833
Query 834 CGAAACTCTCTTGCACGAAACCAGTACAACTCGAAACAAGAAGCAACTTAAGGAGGTTGG 893
|||||||||||| ||||||||||||||||||| ||||||||||||| || | ||||||||
Sbjct 834 CGAAACTCTCTTCCACGAAACCAGTACAACTCAAAACAAGAAGCAAGTTCATGAGGTTGG 893
Query 894 CAAAACTAGCACTGGGATTCCTATCATCAGAAAAGTTGATAAGGGAAAGGCTATCGTTGA 953
|||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 894 CAAAACTAGCACTGGGATTCCTGTCATCAGAAAAGTTGATAAGGGAAAGGCTGTTGTTGA 953
Query 954 CGCATAA 960
|||||||
Sbjct 954 CGCATAA 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46968927445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5