BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898746
Length=1890
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57980.1 | Symbols: | DNA-binding bromodomain-containing pr... 2756 0.0
> AT3G57980.1 | Symbols: | DNA-binding bromodomain-containing
protein | chr3:21466919-21469148 REVERSE LENGTH=1899
Length=1899
Score = 2756 bits (1492), Expect = 0.0
Identities = 1778/1912 (93%), Gaps = 35/1912 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGAGCTCCTCCTCGCCTGCGCCGTTCACCGTCACGGTACTGATTCATGGGACTCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGAGCTCCTCCTCGCCTGCGCCGTTCACCGTCACGGTACTGATTCATGGGACTCC 60
Query 61 GTCGCTTCTGAAATCCATAAGCAGAACCCCACTGTTCGTACACTCACCGCCATCGACTGT 120
|||||||||||| ||||||| |||||| ||||| ||||||||||||||||||||||||||
Sbjct 61 GTCGCTTCTGAAGTCCATAAACAGAACTCCACTTTTCGTACACTCACCGCCATCGACTGT 120
Query 121 CGTCACAAGTACAACGATCTCAAGCACCGATTCTCCTGTAACCTGGTCTCGCCGGGATCT 180
||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||
Sbjct 121 CGTCACAAGTACAACGATCTCAAGCGCCGATTCTCCCGTAACCTGGTCTCGCCAGGATCT 180
Query 181 GCAGAAGGAGAAGAAGATACTCTCGCCGCCGAGATCTCTTCCGTTCCTTGGCTTGAGGAG 240
|| | | |||| | | || |||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCCG-A--TGAAG-A-A-ACCCTCGCCGCCGAGATCTCTTCCGTTCCTTGGCTTGAGGAG 234
Query 241 TTGAGAAAGCTCCGTGTCGATGAACTCCGACGAGAAGTCGAACGTTACGATCTATCCATC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TTGAGAAAGCTCCGTGTCGATGAACTCCGACGAGAAGTCGAACGTTACGATCTATCCATC 294
Query 301 TCGTCCTTGCAGCTGAAGGTGAAGAGATTGGAAGATGAGAGAGAGAAGAGCTTGAAAACC 360
||||| |||||| |||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 295 TCGTCATTGCAGTTGAAGGTGAAAACATTGGAAGATGAAAGAGAGAAGAGCTTGAAAACT 354
Query 361 GAGAATTCAGATCTAGATAAAATCGCGGAGACGAAAGAGAACCACAGTGAATCGGGAAAC 420
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||
Sbjct 355 GAGAATTCAGATCTAGATAGAATCGCGGAGACGAAAGAGAACCACACTGAATCGGGCAAC 414
Query 421 AAATCCGGCGTACCGGTCGCCGAGCCGACAAATTCTCCAGATCCGATTGATAATAGTCCC 480
|| |||||||||||||| | |||| || ||||||||||||||||| ||||||||||||
Sbjct 415 AACTCCGGCGTACCGGTTACTGAGCTGAAAAATTCTCCAGATCCGAATGATAATAGTCCT 474
Query 481 GGAACCGGATCTGAAAACACGAACAGAGATGTTAAAATCGCTGAACCAGTGGACGAAGAA 540
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 475 GGAACCGGATCTGAGAACACGAACAGAGCTGTTAAAATCGCTGAACCAGTGGACGAAGAA 534
Query 541 CCGAACCGGAT---------------CGACGAGAAGCCGGTC-AGAGAGGATTCGGGTAG 584
||||||||||| |||||||||||||| | |||||||||||||||||
Sbjct 535 CCGAACCGGATCGGCGGAGAAGACAACGACGAGAAGCCGG-CAAGAGAGGATTCGGGTAG 593
Query 585 AGGAAGTTGCGAGAGCGTGGCCAAGGAATCGGATAGAGCAGAACCAGAAAGAGAGGGAGA 644
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
Sbjct 594 AGGAAGTTGCGAGAGCGTGGCGAAGGAATCGGATAGAGCAGAACCAAAAAGAGAGGGAAA 653
Query 645 TGACTCGCCCGAGTTCGTTGAGTCAATGGACGAGTCGAAAGGAGAGGAAGATAGGAAAGA 704
||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 654 TGACTCGCCTGAGTTAGTTGAGTCAATGGACGAGTCGAAAGGAGAGGAAGATACGAAAGA 713
Query 705 AACGAGTGATGGGCAGAGCTCGGCGAGCTTACCGAGAAAGGAGACGGTAAACCAGGACCA 764
|||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||
Sbjct 714 AACGAGTGATGGGCAGAGCTCGGCGAGCTTCCCGAGAAAGGAGACGGTAGACCAAGACCA 773
Query 765 ACCGGATAACGAAGATCAATCTCTGACCGTCAATAAGATCCCCGCTGAATCTCAGCCGTT 824
|||||||||| ||||||||||||| ||||||||||||||| || |||||||||||||||
Sbjct 774 ACCGGATAACAAAGATCAATCTCTCACCGTCAATAAGATCTTCGTTGAATCTCAGCCGTT 833
Query 825 GATTGATTTCATCGAGATTCTTCAGTCTCACCCCATTGGCTCTCACTTTTCGCGCCGGCT 884
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GAGTGATTTCATCGAGATTCTTCAGTCTCACCCCATTGGCTCTCACTTTTCGCGCCGGCT 893
Query 885 CGAAAGCCAGGAAACATCCGAGTACGAAAGGATAATAAGGCAGCACATAGACTTTGAGAT 944
||||| ||||||||||||||| ||| | |||||||||||||| |||||||||||||||||
Sbjct 894 CGAAACCCAGGAAACATCCGACTACTATAGGATAATAAGGCAACACATAGACTTTGAGAT 953
Query 945 GATTCGAAGTCGTGTGGAAGAAGGTTACTACAAAACCT-CCAGGAGCAA-TTTCTTTCGG 1002
||||||||||||||||||||| ||||||||||||| || |||||| ||| ||| ||||||
Sbjct 954 GATTCGAAGTCGTGTGGAAGAGGGTTACTACAAAA-CTGCCAGGACCAAGTTT-TTTCGG 1011
Query 1003 GATTTACTGCTACTAGTCAACAATGTGAGAGTTTTCTATGGCGAGCCATCTTCTGAGTTT 1062
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1012 GATTTACTGCTACTAATCAACAATGTGAGAGTTTTCTATGGCGAGCCATCGCCTGAGTTT 1071
Query 1063 AATGTCA-CAAAGCAGCTTTACCAGCTTATCAAGAAACAGATGAGTCTT-AAGATTCCTA 1120
|||| || |||| ||||||||||| || |||||||||||||||||| || ||||||||||
Sbjct 1072 AATG-CAGCAAAACAGCTTTACCAACTCATCAAGAAACAGATGAGT-TTCAAGATTCCTA 1129
Query 1121 AACAAACCTTACCAACACCAAAAGAAGAAT-CCTTGGTGACGTCTAAGGAGGAAGTCACA 1179
|||||||||||||| ||||||||| || || ||||||||||||||||||||||||||| |
Sbjct 1130 AACAAACCTTACCACCACCAAAAG-AGGATGCCTTGGTGACGTCTAAGGAGGAAGTCAAA 1188
Query 1180 GTCTCTTCTCTAAAACCAACACTTTCAGTGCCTATTATAGCTTGTCGGAAACGTAGTTCC 1239
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 GTCTCTTCTCTTAAACCAACACTTTCAGTGCCTATTATAGCTTGTCGGAAACGTAGTTCC 1248
Query 1240 TTGGCTGTTAGATCTTCAGCGTCTGTCACTGAAACTTTGAAGAAAAAGACTAAAGTAGTT 1299
||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1249 TTGGCTGTTAGATCTCCAGCGTCAGTCACTGAAACTTTGAAGAAAAAGACTAGAGTAGTT 1308
Query 1300 CCAACAGTCGATGAGAAGCCAGTTTCAGAAGAGGAGGAAGATGA-AACCTCTGATAAAGA 1358
|||||||| |||||||||| |||||||||||||||||||| || | |||||||||||||
Sbjct 1309 CCAACAGTTGATGAGAAGCAAGTTTCAGAAGAGGAGGAAG-GGAGACCCTCTGATAAAGA 1367
Query 1359 TGTGAAACCTATTGTTTCTAAGAAGATGACTAGAGGAGGAGCACCCTCAACAGCTAAAAA 1418
|| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1368 TGAGAAACCTATTGTTTCTAAGAAGATGGCTAGAGGAGCAGCACCCTCAACAGCTAAAAA 1427
Query 1419 TGTAGGGAGCACAAACGTTAACACCAGTTTGAATGCTGGTATCTCTAGTAAAGGCCGGTC 1478
|||||||||| ||||||||| ||||||||||||||||||||||||| || |||||| ||
Sbjct 1428 AGTAGGGAGCAGAAACGTTAAGACCAGTTTGAATGCTGGTATCTCTAATAGAGGCCGATC 1487
Query 1479 TTCAAACGATAGCTCTGTGCCGAAGAAAAGTGTTCAAGAAAAGAAGGGTAACAACGCTAG 1538
| |||||| ||||||||||| |||||||||||||||| |||||||||||| |||| | ||
Sbjct 1488 TCCAAACGGTAGCTCTGTGCTGAAGAAAAGTGTTCAACAAAAGAAGGGTATCAACACCAG 1547
Query 1539 TGGTGGCTCAAAAAAGCAAAGTGCTGCTAGTTTTCTTAAGAGAATGAAAGGGGTTTCATC 1598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 TGGTGGCTCAAAAAAGCAAAGTGCTGCTAGTTTTCTTAAGAGAATGAAAGGGGTTTCATC 1607
Query 1599 ATCTGAAACCGTAGTAGATACAGTGAAGGCTGATTCCTCTAATGGAAAGAGAGGAGCTGA 1658
||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1608 ATCTGAAACAGTCGTAGAGACAGTGAAGGCTGAATCCTCTAATGGAAAGAGAGGAGCTGA 1667
Query 1659 ACAGAGGAAAAGTAATAGTAAGAATGACAAAGTGGATGCAGTAAAACAGCCTGCTGGTCA 1718
||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||
Sbjct 1668 ACAGAGGAAAAGTAATAGTAAGAGTGAGAAAGTGGATGCAGTAAAACTGCCTGCTGGTCA 1727
Query 1719 GAAACGATTAACTGGGAAAAAGCCAACAATTGAAAAGGGTAGTCCTGCAAAGAAAAACAC 1778
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1728 GAAACGATTAACTGGGAAAAGGCCAACAATTGAAAAGGGTAGTCCTACAAAGAAAAACAG 1787
Query 1779 TGGTGCCGCCTCTAAAAGAGGCACTGCTCCTCTAATGACAAAGCGGGACAGTGAAACTAG 1838
||||| |||||||||||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct 1788 TGGTGTCGCCTCTAAAAGAGGCACTGCTTCTCTGATGGCAAAGCGGGACAGTGAAACTAG 1847
Query 1839 TGAAAAGGAAACAGGTTCTTCTACTCGTCCGAAGAAACGTTCAAAGAGGTGA 1890
|||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1848 TGAAAAGGAAACAGGTTCTTCTACTCGTCCGAAGAAGCGTTCAAAGAGGTGA 1899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93573815880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5