BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898751
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58020.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1086 0.0
AT2G42080.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 263 2e-69
> AT3G58020.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr3:21479480-21481349 FORWARD LENGTH=1154
Length=1154
Score = 1086 bits (588), Expect = 0.0
Identities = 713/770 (93%), Gaps = 22/770 (3%)
Strand=Plus/Plus
Query 1 ATGATGGCCGCCATAAGAGCAGCGATTCTCAAGCCACAAGACTATTGTTCTTACATCAAA 60
||||||||||||||||||||||||||||| ||||| |||||||||| |||| || |||||
Sbjct 22 ATGATGGCCGCCATAAGAGCAGCGATTCTGAAGCCGCAAGACTATTATTCTCACCTCAAA 81
Query 61 ACAGCTTTTTTCCATTCTACTTCTATCTTACAACGCAAACATCAATCCAATTCAAAAGCT 120
|||||| |||||||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 82 ACAGCTCTTTTCCATTCGACTCCTATCTTACAACGCAAACATCAATCTAATTCAAAAGCT 141
Query 121 CGAAGCAAAAGGTTGGGAAGAAAGAAGGCAAAGCAAGATTTGCGTCGTAATGTGAATGCT 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 CGAAGCAAAAGGTTTGGAAGAAAGAAGGCAAAGCAAGATTTGCGTCGTAATGTGAATGCT 201
Query 181 TTTGCACAACACTTATTCGGGATTTGGAGTGATGGGTTTGATTACTCTGGTAAGCACACC 240
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 202 TTTGCACAACACTTATTTGGGATATGGAGTGATGGGTTTGATTACTCTGGTAAGCACACC 261
Query 241 TCGTGGTTTGAGAAACAATACTCTAGAGTTTCCAAAAGGAATCGGAATGGTAGAAGACAC 300
|| |||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||
Sbjct 262 TCATGGTTTGAGAAACAGTACTCTAGGGTTTCCAAAAGGAATCGGAATGGTAAAACACAC 321
Query 301 ATCCCTCAACATTTGGATAAAAGATGTTTTGATTTTAGCGAAGTTGATGATGGATATGAA 360
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 322 ATCCCTCAACATTTGGATAAAAGATGTTTTGATTTTAGCGAAGTTGATGAGGGATACCAA 381
Query 361 ATTGAGCACTTTTTGCGGACTGCATTGGGTGGATCCCGACGTTTCTCTTGGTCAAACACT 420
|||||| ||||||| |||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 382 ATTGAGTACTTTTTAAAGACTGCGTTGGGTGGATCCCGAGGTTTCTCTTGGTCAAACACT 441
Query 421 CATGGAGAGGGGGGAACTCGCTCAGGGAGGTACTCTAGCAACTTTAGAAAATCTTGGGGT 480
| || || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 442 CGTG-AG-GGGGG-AACTCGCTCAGGGAGGTACTCTAACAACTTTAGAAAATCTTGGGGT 498
Query 481 TCGAGATATCGATTAGATGAAGAAGAAGAAGA-------------TA--AGTATTCTTCA 525
|| |||||||| |||||||||||||||||||| || |||||||||||
Sbjct 499 TCAAGATATCGCTTAGATGAAGAAGAAGAAGAAGAAGAAGAAGAATACGAGTATTCTTCA 558
Query 526 ACAGAA-TCGAGCGACACAGAACCAAACCAGGAGTCTCATAGACA-AGCACTTGGTTTGA 583
|||| | | |||||||||||||||||| ||||||||||||||||| | |||||||||| |
Sbjct 559 ACAGGAGT-GAGCGACACAGAACCAAATCAGGAGTCTCATAGACAGA-CACTTGGTTTAA 616
Query 584 GTTCATCAGGTCCCTTAAACCTTGAAGATGTCAAAATTGCATACCGAGCTTGTGCATTAA 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 GTTCATCAGGTCCCTTAAACCTTGAAGATGTCAAAATTGCATACCGAGCTTGTGCATTAA 676
Query 644 AATGGCATCCAGATCGTCACCACGCCTCTACCAAGAATGAAGCTGAGGAAAAGTTCAAGC 703
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 677 AATGGCATCCAGATCGTCACCACACCTCTACCAAGAATGAAGCTGAGGAAAAATTCAAGC 736
Query 704 TCTGCACTGTGGCATATCAATCTTTATGCGAAAAGCTAGCCATGAACTAA 753
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 TCTGCACTGTGGCATATCAATCTTTATGCGAAAAGCTAGCCATGAACTAA 786
> AT2G42080.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr2:17553240-17555504 REVERSE LENGTH=990
Length=990
Score = 263 bits (142), Expect = 2e-69
Identities = 601/809 (74%), Gaps = 85/809 (11%)
Strand=Plus/Plus
Query 7 GCCGCCATAAGAGCAGCGATTCT-CAAGCCAC-AAGACTATTGTTCTTA-CATCAAAACA 63
|||||||| |||||||||||||| | | |||| ||| ||||| |||| | | |||||||
Sbjct 36 GCCGCCATTAGAGCAGCGATTCTCCGA-CCACAAAG-CTATTCTTCTCAGC-TCAAAACC 92
Query 64 GC-TTTTTTCCATTCTACTTCTATCTTACAACGCAAA-----CA--T-C----AATCCAA 110
|| |||||| ||||| ||| || ||||| |||||||| || | | |||| ||
Sbjct 93 GCGTTTTTT-CATTCAACTCCTGTCTTAGAACGCAAACGTCGCACTTCCTGGGAATCGAA 151
Query 111 TTCAAAAGCTC-GAAGCAAAAGGTTGGGAAGAAAGAAGGCAAAGCAAGA-TT-TGCGTCG 167
|||| | || ||| || ||||| |||||| || || ||||||||| || | | ||
Sbjct 152 AGCAAATGTTCACAAG-AAGAGGTTCAGAAGAATGAGGGAAAAGCAAGAGTTAT-TG-CG 208
Query 168 TAATGTGAATGCTTTTGC-ACAACACTTATTCGGGATTTGG-AGTGATG-GGTT--T--- 219
|||||| ||||||||||| ||| || | || || ||| | ||||| | || |
Sbjct 209 TAATGTCAATGCTTTTGCTGCAA-ACATGTTTACGAGCTGGCA-TGATGAGTTTGATGAC 266
Query 220 GAT--T-ACTC-T---GGTAAGCACACCTCGTGGTTTGAGAAACAATACTCTAGAGTTTC 272
||| | ||| | || ||||| ||||||||||| | ||||| ||||| | || |
Sbjct 267 GATGGTCCCTCATCCCGG-AAGCAAACCTCGTGGTTCAAAAAACAGTACTCCA-AGGAAC 324
Query 273 CAAAAGG-AATCGGAATGGTAGAAGACACATCCCTCAACA-TTTGGATAAAA-GATGTTT 329
| ||||| || | |||| | || |||| ||| | ||| || || ||||| || |||
Sbjct 325 CCAAAGGAAACCAGAAT--AACAA-ACACGGCCC-CTACACTTGGGGTAAAAGGA-ATTT 379
Query 330 TGATTTTAGCGAAGTTGATGATGGA-TATGAAATTGAGC-ACT-TTTTGCGGACTGCATT 386
||||||| ||||||||||||| ||| | ||| | || | | | | || || ||||| ||
Sbjct 380 TGATTTTTGCGAAGTTGATGA-GGACTTTGATGTCGA-CTA-TGTATTCCGAACTGCTTT 436
Query 387 GGGTGGATCCCGACGTTTCTCTTGGTCAAACACTCATG--GA-GA-G------G--GG-G 433
|| ||||||||| ||||||||| ||| |||||||| || || | | || |
Sbjct 437 TGGAGGATCCCGAGGTTTCTCTTTTTCATTCACTCATGAAGAGGATGAACCTCGATGGCG 496
Query 434 GAACTCGCTCAGGGAGGTACTCTAGCAACTTTAGA-AAATCTTGGGGTTCGAGATATCGA 492
| | || ||| |||| || | ||||| || | | |||||| | |||| ||||||
Sbjct 497 GCA-TCACTCTTCAAGGTTTTCCAACAACTCTA-ACAGGTCTTGGAGATCGAAATATCGG 554
Query 493 TTAGATGAAGAAGAAGAAG-ATAAG--TATTCTTCA-AC-AGAATCGA-GC-GACACAGA 545
||||||||||| ||||||| | ||| ||| ||||| || | | || | || | ||
Sbjct 555 TTAGATGAAGATGAAGAAGAAGAAGACTATACTTCAGACTCCAGT-GACTCTGAGTCTGA 613
Query 546 ACCAAACCAGGAGTCTCATAGACAAGCACTTGGTTTGAGTTCATCAGGTCCCTTAAACCT 605
|||||||| | |||||||||||||||||||| ||||| | |||||||||||||||||
Sbjct 614 GCCAAACCAAGTTTCTCATAGACAAGCACTTGGCCTGAGTCCCTCAGGTCCCTTAAACCT 673
Query 606 TGAAGATGTCAAA-ATTGCATACCGAGCTTGTGCATTAAAATGGCATCCAGATCGTCACC 664
| ||||||||||| || || || ||| ||||||||||||||||||||||||||||||| |
Sbjct 674 TAAAGATGTCAAACAT-GCGTATCGAACTTGTGCATTAAAATGGCATCCAGATCGTCATC 732
Query 665 ACGCCTCTACCAAGAATGAAGCTGAGGAAAAGTTCAAGCTCTGCACTGTGGCATATCAAT 724
| | |||||||||| | | ||||| | ||||||||||||||||| |||||| |||||||
Sbjct 733 AAGGCTCTACCAAGGAGGCGGCTGAAGCAAAGTTCAAGCTCTGCAGTGTGGCTTATCAAT 792
Query 725 CTTTATGCGAAAAGCTAGCCATGAACTAA 753
||||||| ||||||||| | ||||||||
Sbjct 793 CTTTATGTGAAAAGCTATCTGTGAACTAA 821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36570459016
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5