BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898756
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58060.1 | Symbols: | Cation efflux family protein | chr3:2... 1967 0.0
> AT3G58060.1 | Symbols: | Cation efflux family protein | chr3:21497778-21499676
REVERSE LENGTH=1236
Length=1236
Score = 1967 bits (1065), Expect = 0.0
Identities = 1179/1236 (95%), Gaps = 0/1236 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGTCAATTATTGTCCGGAAACACCGTTGCTTTCGGCAAACGATCATGAGGCTGGT 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1 ATGGAAGTCAATTATTGTCCGGAAACACCGTTGCTTTCGTCAAACGATCATGAGGCTATT 60
Query 61 GATCACAAACCGAAGTTAACCGGTATGGTTTCTTCAATGAAATCGAATTTCTTCACGGAT 120
||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 61 GATCACAAACCAAAGTTAACCGGTATGGTTTCTTCTATGAAATCGAATTTCTTCGCGGAT 120
Query 121 TTGCCTCACAAACTTCGATCCAATATCGATCCGGAGAACCCTTTTCACCTTGATGTCTTC 180
|||||||| ||||||||||| || |||||||| ||||||||||| ||||||||||||| |
Sbjct 121 TTGCCTCAAAAACTTCGATCAAAAATCGATCCCGAGAACCCTTTGCACCTTGATGTCTCC 180
Query 181 AAAGCTGCAGGCCTCAAAGGAGATGAAAAGGAGTACTACGAAAGACAATTGGCAACACTA 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAAGCTGCAGGCCTCAAAGAAGATGAAAAGGAGTACTACGAAAGACAATTGGCAACACTA 240
Query 241 AAAACCTTTGAGGAAGTAGAAAGTTTCTTAGTTCGATCAGATGAGTATACCATCGATGAA 300
||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 AAATCCTTTGAAGAAGTAGAAAGTTTCTTAGCTCGATCAGATGAGTATACCATCGATGAA 300
Query 301 AAAGAAGAAGAAGAAGATCGAGCTGAGAGAGCTGCACAAGAGCTTGCCATGCAAATCTCC 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAAGAAGAAGAAGAAGATCGAGCTGAGAGAGCTGCACAAGAGCTTGCCATGCAAATCTCA 360
Query 361 AATTGGGCAAACATCTTTTTACTTGCTCTCAAGATATATGCTACTGTAAAGAGTGGATCC 420
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 AATTGGGCTAACATCTTTTTACTTGCTCTCAAGATATATGCTACGGTAAAGAGTGGATCC 420
Query 421 ATAGCGATTGCAGCATCGACACTCGACTCTTTGCTTGACCTTATGGCGGGAGGAATACTT 480
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 ATTGCGATTGCAGCATCTACACTCGACTCATTGCTTGACCTTATGGCGGGAGGAATACTT 480
Query 481 TGGTTCACACATTTGTCAATGAAGAACGTAAATATCTACAAGTATCCTATAGGAAAGCTT 540
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 TGGTTCACACATTTGTCTATGAAGAACGTAAATATCTACAAATATCCTATAGGAAAGCTT 540
Query 541 AGGGTGCAACCTGTTGGAATCATCATTTTCGCCGCTGTTATGGCCACCCTTGGGTTCCAA 600
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 AGGGTGCAACCTGTTGGAATCATCATTTTCGCCGCTGTTATGGCTACCCTTGGGTTCCAA 600
Query 601 GTGCTGCTTGTGGCAGCTGAGCAATTGATTTCGAATGAACCTTCAGAGAAGATGAATCAT 660
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 601 GTGCTGCTTGTGGCAGCTGAGCAATTGATTTCAAATGAACCTTCAGAGAAAATGAATCAT 660
Query 661 GTCCAATTGATTTGGTTATATTCAATCATGCTAAGCGCATCAGCTATTAAACTCGCCTTA 720
||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| ||||
Sbjct 661 GTCCAATTGATTTGGTTGTATTCAATCATGCTAAGCGCAACCGCTATTAAACTCGTCTTA 720
Query 721 TGGATCTACTGCAAAAGCTCGAGAAATCATATAGTTCGTGCATACGCCAAGGATCATCAC 780
|||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||
Sbjct 721 TGGATCTACTGCAAAAGCTCGAGAAACCATATAGTCCGTGCATATGCAAAGGATCATCAC 780
Query 781 TTTGATGTGGTAACAAATGTTCTTGGATTGGTCGCGGCCGTTCTTGCTAATGCCTATTAT 840
|||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 781 TTTGATGTGGTAACAAATGTTCTTGGATTGGTTGCGGCCGTTCTTGCTAATGCTTTTTAC 840
Query 841 TGGTGGCTCGATCCGACTGGTGCTATTCTTTTAGCCATTTACACTATTGTCAACTGGTCT 900
|||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 841 TGGTGGCTCGATCCAACTGGTGCTATTCTCTTAGCCATCTACACTATTGTCAATTGGTCT 900
Query 901 GGGACCGTTATGGAAAATGCAGTTTCATTGATCGGACAATCAGCTCCTCCAGAAGTACTA 960
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGGACTGTTATGGAAAATGCAGTTTCATTGATCGGACAATCAGCTCCTCCAGAAGTACTA 960
Query 961 CAGAAGCTGACATACCTAGTGATGCGCCAAGGTGGCGATAACATCAAACATGTGGATACC 1020
|| ||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 961 CAAAAGTTGACATACCTAGTGATGCGACAAGGCGGCGATAATATCAAACATGTGGATACC 1020
Query 1021 GTCCGAGCCTATACCTTTGGTGTTCTCTATTTTGTCGAGGTGGATATAGAACTGCCAGAG 1080
||||| || |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1021 GTCCGTGCATATACCTTCGGTGTTCTTTATTTTGTCGAGGTGGATATAGAACTGCCAGAG 1080
Query 1081 GATTTGCCATTGAAAGAAGCTCATGCTATTGGTGAATCATTGCAAATAAAGCTTGAAGAA 1140
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1081 GATTTGCCATTGAAAGAAGCTCATGCGATTGGTGAATCATTGCAAATAAAGCTTGAAGAA 1140
Query 1141 CTTCCAGAGGTGGAAAGAGCTTTTGTTCATCTAGATTTTGAGTGTCATCACAAGCCTGAA 1200
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CTTCCTGAGGTGGAAAGAGCTTTTGTTCATCTAGATTTTGAGTGTCATCACAAGCCTGAA 1200
Query 1201 CATTCAGTCCTTTCTACAATCCCCAATGATTTATGA 1236
||||| |||||||||||||||||||| |||||||||
Sbjct 1201 CATTCCGTCCTTTCTACAATCCCCAACGATTTATGA 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60742659450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5