BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg898761

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G58100.1 | Symbols: PDCB5 | plasmodesmata callose-binding pr...   802    0.0  


> AT3G58100.1 | Symbols: PDCB5 | plasmodesmata callose-binding 
protein 5 | chr3:21515199-21516487 REVERSE LENGTH=899
Length=899

 Score =  802 bits (434),  Expect = 0.0
 Identities = 494/523 (94%), Gaps = 3/523 (1%)
 Strand=Plus/Plus

Query  2    TGTAtctc-tct-cgtctctctcttctcGCTGCGACGGCGGCGATGTTAATGGTGATTGC  59
            ||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct  180  TGT-TCTCATCTGCGTCTCTCTATTCTCGCTGCGACGGCGGCGATGTTAATGGTGATTAC  238

Query  60   GACTGCGCAGATCGGAGGTCAAGTGTTGCAAGTGGAGTTATGGTGTGTGGCGAAGAACAA  119
            ||||||||||||||| ||||||||| | || |||||||||||||||||||||||||||||
Sbjct  239  GACTGCGCAGATCGGCGGTCAAGTGATACAGGTGGAGTTATGGTGTGTGGCGAAGAACAA  298

Query  120  CGCGGAAGATTCGTCGCTCCAGACGGCGATTGAGTGGGCTTGTGGTCAAGGCGGCGCTGA  179
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct  299  CGCGGAAGATTCGTCGCTACAGACGGCGATTGAGTGGGCTTGTGGTCAAGGCGGAGCCGA  358

Query  180  CTGTGGTCCGATTCAGCAAGGTGGACCTTGTAACGACCCGACGGATGTTCAGAAAATGGC  239
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  359  TTGTGGTCCGATTCAGCAAGGTGGACCTTGTAACGACCCGACGGATGTTCAGAAAATGGC  418

Query  240  GTCGTTTGTTTTCAACAATTATTATCTGAAGAACGGCGAGGAGGACGAGGCTTGCAATTT  299
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  419  GTCGTTTGTTTTCAACAATTATTATCTGAAGAACGGCGAGGAGGACGAAGCTTGCAATTT  478

Query  300  CAACAATAACGCTGCTCTTACTTCACTCAATCCCAGTCAAGGAACTTGCAAATATCCTTC  359
            ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct  479  CAACAATAACGCTGCTCTTACTTCACTCAATCCAAGTCAGGGAACTTGCAAATATCCTTC  538

Query  360  GAGTAAGGGAGTCAACAATGGTCGAGTAGCGGATGACACTTCAACGGGTGCAGGACAAGC  419
            ||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct  539  GAGTAAGGGAGCCAACAATGGTCGATTAGCGGATGACACTTCAATGGGTGCAGGACAAGC  598

Query  420  ATATATGAGCCGTGGTGGCAGACCGGTTTCCAGCAGTTGGATTGTGACCTTCATCGGTTT  479
            | ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct  599  AGATATGAGCCGTGGTGGCAGACCGATTTCCAGCAGTTGGATGGTGACCTTCATCGGTTT  658

Query  480  CACCAGCCTATTGATGATGACACGGATAATTCATCATTTTTAG  522
            |   ||| |||||| ||||||| |||||||||||||| |||||
Sbjct  659  CGGTAGCTTATTGACGATGACATGGATAATTCATCATCTTTAG  701



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24966371059


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5