BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898776
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58240.1 | Symbols: | TRAF-like superfamily protein | chr3:... 1441 0.0
AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:19769... 104 2e-21
AT2G05420.1 | Symbols: | TRAF-like family protein | chr2:19839... 99.0 7e-20
AT3G58270.1 | Symbols: | Arabidopsis phospholipase-like protei... 89.8 4e-17
AT3G29580.1 | Symbols: | Arabidopsis phospholipase-like protei... 67.6 2e-10
AT3G27040.1 | Symbols: | Meprin and TRAF (MATH) homology domai... 62.1 1e-08
AT2G01790.1 | Symbols: | TRAF-like family protein | chr2:34132... 62.1 1e-08
> AT3G58240.1 | Symbols: | TRAF-like superfamily protein | chr3:21568530-21569827
REVERSE LENGTH=954
Length=954
Score = 1441 bits (780), Expect = 0.0
Identities = 900/958 (94%), Gaps = 8/958 (1%)
Strand=Plus/Plus
Query 1 ATGGGGAATCCAGTCGATAACAAGTTCACTTGGGTGATTAAGAATTTTTGCTCTGTGAGC 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGGGAATCCAGTCGATAACAAGTTCACTTGGGTGATTAAGAATTTTTGTTCTGTGAGC 60
Query 61 TCCAAGCCCATTTATTCAGATCAATTCTTGATTGGTGGCTACAAATGGCATATTTTGGCC 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 61 CCCAAGCCCATTTATTCAGATCAATTCTTGATTGGTGGCAACAAATGGCATATTCTGGCC 120
Query 121 TATCCCAAGAAACGAGATGGTCATCAATGCTTTTGTCTGGATCTGGAACTTGTTGATTGT 180
||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 121 TATTCCAAGAAACGAGATGGTCATCAATTCCTTTGTCTGGATCTGGAACTTGTTGATTGT 180
Query 181 GAATTCTTGCCTTCTGGATGGAG-AAGCGTCGTGAAGTTTTCTTTTACTGTCGTAAATTA 239
|||||||||||||||| |||||| ||| ||||||||| |||| ||||||||||||||||
Sbjct 181 GAATTCTTGCCTTCTGAATGGAGAAAG-GTCGTGAAGGTTTCCTTTACTGTCGTAAATTT 239
Query 240 TTTCTCGAAGAAACTCTCAAGCCAGATAGGACTAAAACACTTG-TTTACTAAGAAGGAAC 298
||||||||||||||||||||| |||||||||||||||||| || |||| |||||||||||
Sbjct 240 TTTCTCGAAGAAACTCTCAAGACAGATAGGACTAAAACAC-TGTTTTAATAAGAAGGAAC 298
Query 299 GAAGCAAGGGTTTATCCGTGATTCACTTTAGTGAACTTACGGACAAAAAACGTGGGTTTC 358
||||||||||| |||| || ||||| ||||||||||||||||||||||| |||||||||
Sbjct 299 GAAGCAAGGGTGGATCCTTGTTTCACCTTAGTGAACTTACGGACAAAAAAAGTGGGTTTC 358
Query 359 TTGTGGATGGAGAAGTCGAAATTGTTGCTCAGATAGA-TGTTCGTGAAACTGATCATAAA 417
| |||||||||||||||||||||||||| |||||| | ||||| ||||||||||| | |
Sbjct 359 TGGTGGATGGAGAAGTCGAAATTGTTGCCCAGATA-ACTGTTCTTGAAACTGATCGCAGA 417
Query 418 TTACAAGGATCAAAGGACTATGACATGGAAATGCAATATTTGAATGGGATGGCAACGACA 477
|| || | ||| ||||||||| ||||||||||||||| || | |||||||||||||||||
Sbjct 418 TTTCATGTATCGAAGGACTATAACATGGAAATGCAATGTTGGGATGGGATGGCAACGACA 477
Query 478 TTTTTC-ATAAACAAAGAGCCCAATGATGATGACAAGGCAGGTTTGGTGAATGTCAAGGG 536
|| || | ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 478 CTTGTCGA-AAACAAAGAGCTCAATGATGATGACAAGGCAGGTTTGGTGAATGTCAAGGG 536
Query 537 GTTTCAAGTTCTTCCTTCACAGTTGGGTATTGTGAATCGCATCTTTGAGAAACACCCGGA 596
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 537 GTTTCAAGTTCTTCCTTCACAGTTGGGTATTGTGAATCGCATCTTTGAAAAACACCCGGA 596
Query 597 GACTGCATTAGAATGCTGTACAAAGAACCAAGAACTGAGAGCATCATACATAAATGTCAT 656
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 597 GACTGCATTAGAATGCTGTACGAAGAACCAAGAACTGAGAGCATCATACATAAATGTCAT 656
Query 657 CTTTAGCCTAATCAAGATGCTCTACAAAGGGGCTCAGGAACACTCCACACATGATCTGTC 716
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CTTTAGCCTAATCAAGTTGCTCTACAAAGGGGCTCAGGAACACTCCACACATGATCTGTC 716
Query 717 TGATGCAGAAGGTGCTCTGGCATACATGAAAAATGTAGGGTTTAAGTTGGATTGGTTGGA 776
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 717 TGATGCAGAAGGTGCTCTGGCATACATGAAAAATCTAGGGTTTAAGTTGGATTGGTTGGA 776
Query 777 GAAGAAACTTGATGAAGTAAAAGAAATCAAGAAGAAATGTGAACGGGTGACTGAAATGCA 836
|||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| |
Sbjct 777 GAAGAAACTTGATGAAGTCAAAGAAATCAAGAAGAAATGTGAGCGAGTGACTGAAATGGA 836
Query 837 GCAAGAGCTGCATGACTTGATGAATAAGCACACAAACGTAAGTATACTGCTGGAAAAGGA 896
| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 837 GAAAGAGCTGCACGACTTGATGAATAAGCACACAAACGTAAGTAAACTGCTGGAAAAGGA 896
Query 897 GATGTTAGAGATTAAGAATGCTTCAGCTCCTGATCTATCTTTCAGTGATGTTATTTGA 954
|| |||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 897 GAAGTTAGAGATTAAGAATGCGTCGGCTCCTGATCTATCTTTCAGTGATGTTATTTGA 954
> AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:1976918-1978553
FORWARD LENGTH=1082
Length=1082
Score = 104 bits (56), Expect = 2e-21
Identities = 105/128 (82%), Gaps = 6/128 (5%)
Strand=Plus/Plus
Query 689 CTCAGGAACACTCCACA-CATGATCTGTCTGATGCAGAAGGTGCTCTGGCATACATGA-A 746
|||| |||| ||||| | ||| ||| |||||||||| | ||| |||||||| ||| |
Sbjct 796 CTCAAGAACTCTCCA-ATGATGGTCTCTCTGATGCAGGTGTTGCACTGGCATATTTGATA 854
Query 747 -AAATGTAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACTTGATGAAGTAAAAGAAATCA 805
||| |||| ||||||||||||||||||||||||||||||||||| |||| |||| |
Sbjct 855 GAAA--CAGGGCTTAAGTTGGATTGGTTGGAGAAGAAACTTGATGAATTAAAGGAAAAGA 912
Query 806 AGAAGAAA 813
||||||||
Sbjct 913 AGAAGAAA 920
> AT2G05420.1 | Symbols: | TRAF-like family protein | chr2:1983901-1985341
FORWARD LENGTH=894
Length=894
Score = 99.0 bits (53), Expect = 7e-20
Identities = 220/297 (74%), Gaps = 25/297 (8%)
Strand=Plus/Plus
Query 527 ATGTCAAGGGGTTTCAAGTTCTTCCTTCACAGTTGGGTAT-TGTGAATCGCATCTTTG-A 584
||||||| ||||||||||||||||| ||| | | | || |||||||| | |||| |
Sbjct 485 ATGTCAATGGGTTTCAAGTTCTTCC-TCA-A-AT-AGAATCGGTGAATCGTTTGTTTGCA 540
Query 585 GAAACACCCGGAGACTGCAT-TAGAA-TGCTGTACAAAG-AACCAAGA-ACTG-AGAGCA 639
||||||| || | ||||| | || | | || ||||| |||| | | | || ||| |
Sbjct 541 -AAACACCTAGATATTGCATCCA-AATTTC-GTCCAAAGAAACC-ATATA-TGAAGA-CG 594
Query 640 TCATACATAAATG-TCATCTTTAGCCTAATCAAGATGCTCTACAAAGGGGCTCAGGAACA 698
| ||||| |||| || || | ||| ||| ||||| ||| | | || | |||| || |
Sbjct 595 GCGTACATGAATGTTC-TCCTAAGCTTAACCAAGACGCTGTGCCAATCGCCTCAAGATCT 653
Query 699 CTCCACA-CATGATCTGTCTGATGCAGAAGGTGCTCTGGCATACATGA-AAAATGTAGGG 756
||||| | ||||| | |||| ||||| | ||| ||| |||| ||| | || | ||||
Sbjct 654 CTCCA-ATGATGATATATCTGGTGCAGGCGCTGCACTGACATATTTGAGAGAA-GCAGGG 711
Query 757 TTTAAGTTGGATTGGTTGGAGAAGAAACTTGATGA-AGTAAAAGAAATCAAGAAGAA 812
|||||||||||||||||||||||||||| || ||| | |||| |||| ||||||||
Sbjct 712 TTTAAGTTGGATTGGTTGGAGAAGAAACATGGTGAGA-TAAAGGAAAAGAAGAAGAA 767
> AT3G58270.1 | Symbols: | Arabidopsis phospholipase-like protein
(PEARLI 4) with TRAF-like domain | chr3:21575887-21577845
REVERSE LENGTH=1249
Length=1249
Score = 89.8 bits (48), Expect = 4e-17
Identities = 159/211 (75%), Gaps = 13/211 (6%)
Strand=Plus/Plus
Query 1 ATGGGGAATCCAGTCGATAACAAGTTCACTTGGGTGATTAAGAATTTTTGCTCTGTG-AG 59
|||||||| ||| |||||||||||||||||||||||||||||||| | |||| | ||
Sbjct 72 ATGGGGAAAGAAGTTGATAACAAGTTCACTTGGGTGATTAAGAATTTCTCCTCTCAGCAG 131
Query 60 CTCCAAGCCCATTTATTCAGATCAATTCTT-GATTGGTGGCTACAAATGGCATATTTTGG 118
|||| | | |||||| ||| ||||||| | | | ||||| |||||||| | || |||
Sbjct 132 -TCCAGGAAAAATTATTCTGATGAATTCTTCG-TCGATGGCTGCAAATGGCGTCTTCTGG 189
Query 119 CCTATCCCAA-G-AAACGAGATGGTCATCAATGCTTTTGTCTGGATCTGGAAC-TTGTTG 175
||| ||| || | ||| | | || | | || | || | ||| |||||| | ||| ||
Sbjct 190 CCTTTCCTAAAGGAAATG-G-TGTTGAG-AA-G-TTGTCACTGTATCTGGC-CGTTGCTG 243
Query 176 ATTGTGAATTCTTGCCTTCTGGATGGAGAAG 206
| ||||||| || ||| ||||||||||||
Sbjct 244 GTAGTGAATTTTTACCTGATGGATGGAGAAG 274
> AT3G29580.1 | Symbols: | Arabidopsis phospholipase-like protein
(PEARLI 4) with TRAF-like domain | chr3:11394675-11395871
REVERSE LENGTH=921
Length=921
Score = 67.6 bits (36), Expect = 2e-10
Identities = 42/45 (93%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 1 ATGGGGAATCCAGTCGATAACAAGTTCACTTGGGTGATTAAGAAT 45
||||| |||| || |||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAATCTAGACGATAACAAGTTCACTTGGGTGATTAAGAAT 45
Score = 63.9 bits (34), Expect = 3e-09
Identities = 62/75 (83%), Gaps = 4/75 (5%)
Strand=Plus/Plus
Query 741 CATGAAAAATG-TAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACTTGA-TGAAGTAAAA 798
||||||| | | | || ||||||||||||||||||||||||||||| || |||||| |
Sbjct 741 CATGAAAGAGGCT-GGATTTAAGTTGGATTGGTTGGAGAAGAAACT-GAATGAAGTGTTA 798
Query 799 GAAATCAAGAAGAAA 813
|||| ||| |||||
Sbjct 799 GAAAAGAAGGAGAAA 813
> AT3G27040.1 | Symbols: | Meprin and TRAF (MATH) homology domain-containing
protein | chr3:9974912-9977927 REVERSE LENGTH=1077
Length=1077
Score = 62.1 bits (33), Expect = 1e-08
Identities = 38/40 (95%), Gaps = 1/40 (3%)
Strand=Plus/Plus
Query 746 AAAATGTAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACT 785
|||| | |||||||||||||||||||||||||||||||||
Sbjct 936 AAAA-GCAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACT 974
> AT2G01790.1 | Symbols: | TRAF-like family protein | chr2:341322-342480
REVERSE LENGTH=810
Length=810
Score = 62.1 bits (33), Expect = 1e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 753 AGGGTTTAAGTTGGATTGGTTGGAGAAGAAACT 785
|||||||||||||||||||||||||||||||||
Sbjct 675 AGGGTTTAAGTTGGATTGGTTGGAGAAGAAACT 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5