BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898777
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58250.1 | Symbols: | TRAF-like family protein | chr3:21570... 1332 0.0
AT1G31400.1 | Symbols: | TRAF-like family protein | chr1:11245... 82.4 7e-15
> AT3G58250.1 | Symbols: | TRAF-like family protein | chr3:21570745-21572143
REVERSE LENGTH=954
Length=954
Score = 1332 bits (721), Expect = 0.0
Identities = 885/963 (92%), Gaps = 15/963 (2%)
Strand=Plus/Plus
Query 1 ATGGGGAATGATCAAGCTGATAAGAAGAAGTTCAGTTGGGTGATTAAGAATTTCTCCTCT 60
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1 ATGGGGAATGATCAAGCTGATAAGAAGAAATTCAGTTGGGTCATTAAGAATTTCTCCTCT 60
Query 61 TTGCAATCTGAGAAAATATATTCTGATCAGTTCGTGATTGACGGCTGCAGATGGCGTCTT 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGCAATCTGAGAAAATATACTCTGATCAGTTCGTGATTGACGGCTGCAGATGGCGTCTT 120
Query 121 CTGGCCTTTCCCAAGGGAAATAG-TATTAAATCTGATCATTTGTCTCTATATCTTGAAGT 179
|||||||||||||||||||| | || |||||||||||||||||||||||||||||| ||
Sbjct 121 TTGGCCTTTCCCAAGGGAAAT-GATACTAAATCTGATCATTTGTCTCTATATCTTGACGT 179
Query 180 TGCTGAGTCTGAATCATTGCCTTGTGGATGGAGAAGACACGCACAATTTTTCTTCACCAT 239
||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || ||
Sbjct 180 TGCTGAGTCTGAATCATTGCCTTGTGGATGGAGAAGACACGCACAGTTTTCCTTTACTAT 239
Query 240 AGTAAATCATATTCCAGGAAAATGCTCTCAACGTAGAGAAACAATACACTGGTTTTGTGA 299
||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 240 AGTAAATCACATTCCAGAAAAATGCTCTCAACGTAAAGAAACAATACACTGGTTTTGTGA 299
Query 300 GAAAGTACCAGATTGGGGCTTCACAGACATGTTTCCTCTTAATGGACTCAAGGCCAAAGA 359
||||||| ||||||||||||||||| || || ||||||||| || |||||||||| ||||
Sbjct 300 GAAAGTATCAGATTGGGGCTTCACAAACCTGGTTCCTCTTATTGAACTCAAGGCCGAAGA 359
Query 360 TAGCGGATTTCTTGTGAACGGCGACCTCAAAATAGTTGTTGAAATAGAGGTTCTTGAAGT 419
||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||| |
Sbjct 360 TAGTGGATTTCTGGTGAAGGGCGAACTCAAAATAGTTGTTGAAATAGAGGTTCTT---G- 415
Query 420 ACTAGTTATTGGCCTATTAAATGTGTCAGAA--AGCATG-ATGGATGTCAACGGGTTTCA 476
| |||||||||||||||||||||||||||| || | | ||||||||||||||||||||
Sbjct 416 A--AGTTATTGGCCTATTAAATGTGTCAGAATCAGAAAGCATGGATGTCAACGGGTTTCA 473
Query 477 TGTTCTACCTTCTCAAGTGAAATATGTGAAGAGTTTGTTTGAAATACACCCAGACATTGC 536
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TGTTCTACCTTCCCAAGCGAAATATGTGAAGAGTTTGTTTGAAATACACCCAGACATTGC 533
Query 537 AACAAAATTCCGTATAAAGAACCAATATCTGAAGACAGGGTACATGAATGTCTTACTCAG 596
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 534 AACAAAATTCCGTATAAAGAACCAATATCTGAAGACAGGATACATGAATGTGTTACTCTG 593
Query 597 CCTGATTGAGACTGTGCGCCGGTCACCTAAAGAAATCTCCAAGGCTGATCTGGACGATGC 656
||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||
Sbjct 594 CCTGATTGAGACTGTGCGCCGGTCACCTAAAGAAATCTCCAAGAATGATTTGGCCGATGC 653
Query 657 ATATGTTGCACTAGAATCCCTGACTGATTATGGATTTAAGTTAGATTGATTGAAGAAGAA 716
|||||||||| | |||||| |||||||| ||||||||||||| ||||| |||||||||||
Sbjct 654 ATATGTTGCATTGGAATCCTTGACTGATCATGGATTTAAGTTGGATTGGTTGAAGAAGAA 713
Query 717 ACTTGATCAAGTGTCagaaaagaaagagaaagaggaagctggtgagactcgga-gaaaag 775
||||||||||||| || ||||||| |||||||||| ||||||||||||||||| | | |
Sbjct 714 ACTTGATCAAGTGACACAAAAGAAGGAGAAAGAGGCAGCTGGTGAGACTCGGATGCAT-G 772
Query 776 aaattgaggaagagttgaagGATTTGAAGCTGAAGTGTTCAGGGCTCGAAGCTCA-TCTG 834
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct 773 AAATTGGGGAAGAGTTGAAGGATTTGAAGCTGAAGTGTTCAGACCTCGAAGCTCAGT-TG 831
Query 835 GAGAAGGTGAAGCGGAAGTGTTCAGACCTCGAAGCTCGGTTGTTGGAGCAAAAGGCAGAG 894
|| || |||||| |||||||||||||||||||||||| |||| || || ||||||||||
Sbjct 832 GATAAAGTGAAGTGGAAGTGTTCAGACCTCGAAGCTCAGTTGGTGAAGGAAAAGGCAGAT 891
Query 895 GTTTTGGCTGCCATAGCTCCACTCTCGTCTTCTGATGATGGTGTTTTTGATGACtttttt 954
|||||||||||||||||||||||| ||| |||||||| ||||| |||||||||||||||
Sbjct 892 GTTTTGGCTGCCATAGCTCCACTCGGGTCGTCTGATGACGGTGTATTTGATGACTTTTTT 951
Query 955 tGA 957
|||
Sbjct 952 TGA 954
> AT1G31400.1 | Symbols: | TRAF-like family protein | chr1:11245225-11246481
REVERSE LENGTH=837
Length=837
Score = 82.4 bits (44), Expect = 7e-15
Identities = 144/189 (76%), Gaps = 19/189 (10%)
Strand=Plus/Plus
Query 42 GATTAAGAATTTCTCCTCTTTGCAATCTGA-GAAAATATATTCTGATCAGTTC-GT-GAT 98
|||||||||||||||||||||||||||| | | || | |||| |||| | || || | |
Sbjct 36 GATTAAGAATTTCTCCTCTTTGCAATCTCATGCAATT-TATTTTGAT-ATTTTTGTAG-T 92
Query 99 TGACGG-CTGCAGATGGCGTCTTCTGGCCTTTCCCAAGGGAAATAGT-ATTAA-ATCTGA 155
|| || | || ||||| ||||||||||| |||||||||| || || || | || | |
Sbjct 93 TGG-GGACACCAAATGGCATCTTCTGGCCTATCCCAAGGGATATGGTGAT-AGCAT-TAA 149
Query 156 TCA-T-TT-GTCTCTATATCTTGAAGTTGCTGAGTC-TGAATCATT-GCCTTGTGGATGG 210
| | | || |||||| | ||||| ||| |||| || ||| | ||| ||||| ||| |||
Sbjct 150 TAAATGTTTGTCTCTGTTTCTTGGTGTTCCTGA-TCCTGA-TGATTTGCCTTCTGGTTGG 207
Query 211 AGAAGACAC 219
| |||||||
Sbjct 208 AAAAGACAC 216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46818225004
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5