BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898783
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58280.1 | Symbols: | Arabidopsis phospholipase-like protei... 972 0.0
> AT3G58280.1 | Symbols: | Arabidopsis phospholipase-like protein
(PEARLI 4) with TRAF-like domain | chr3:21578512-21579767
REVERSE LENGTH=951
Length=951
Score = 972 bits (526), Expect = 0.0
Identities = 677/748 (91%), Gaps = 17/748 (2%)
Strand=Plus/Plus
Query 31 GTTAATTTGGAACTATTTCCTTCTGGCTGGAGAAGATACGTGG-ATTATC-AATTCACTA 88
|||||| |||||||| |||| | |||||||||||||||||||| ||| || | | ||||
Sbjct 109 GTTAATATGGAACTAATTCCATGTGGCTGGAGAAGATACGTGGAATT-TCGCA-TGACTA 166
Query 89 TAGTCAATCATATTTCTGGGA-ACCATTCCT-TCA-ATAAAAAAGGATGGGGCTGGTTTG 145
||||||||||||| ||| || | |||| || | | |||||||||||||| |||||||||
Sbjct 167 TAGTCAATCATATATCTCCGATA-CATT-CTGT-AGATAAAAAAGGATGGCGCTGGTTTG 223
Query 146 ATGAGAACACAAAAG-TTTGCGGTTTTAGAGACATGATTCCCGTATTCAACCTTAATAAC 204
|||||||||| ||| ||| || |||| |||||||||||||| | ||| ||||||||||
Sbjct 224 ATGAGAACAC-TAAGAATTGGGGGTTTAAAGACATGATTCCCGCAGTCATCCTTAATAAC 282
Query 205 ATTCGTGGTGGATTCTTGTTGAATGGGGAGCTCACGATTATTGCTGAAGTTGAAGTTCAT 264
| || ||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 283 GTAAATGTTGGGTTCTTGTTGAATGGGGAGATCACGATTATTGCTGAAGTTGAAGTTCAT 342
Query 265 GAAATTATTGACACGTTAAATGCATCACAAGTTGAAGAGTACTTTAGTGATGATTCCTCT 324
||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 343 GAATTTATTGACACGTTAAATGCATCACAAGTTGAAGAG--C-TTAGTGATGATTCCTCT 399
Query 325 GAAGATTTTCAGAACAAAGATAATGTAAATATCGAAGTAAACGGCTTTCAGGTTCTTGAT 384
|||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 400 GAAGATTTGCAGAACAAAGATAATGTAACTATCGAAGTCAACGGCTTTCAGGTTCTTGAT 459
Query 385 TCGCAGGTTGATCAGGTGAATGTAATCTTTGAGAAACATCCAGATCTCACGTCGAATTTC 444
||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||
Sbjct 460 TCGCAGGTTGATCAGGTCAATGCAATCTTTGAGAAACATCCAGATCTCATATCGAATTTC 519
Query 445 AATTTAAAGAATCAACATATCAAGAATGCTTACATGCATGCTCTTCTTGACCTAATC-AA 503
| ||| |||||||||||||||| |||||||||||||||||||||||||||||| | | ||
Sbjct 520 AGTTTGAAGAATCAACATATCAGGAATGCTTACATGCATGCTCTTCTTGACCTTA-CGAA 578
Query 504 GACACTGTCCAAATCTACTAAGGACCTCACCGTGGAAGACATGAACAAAGCAGACAATAC 563
|||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||
Sbjct 579 GACACTGTCCAAATCTACTAAGGAACTCACAGTGGAAGACATGAACGAAGCAGACAATAC 638
Query 564 GCTTACTGATCTGGTAAAAGCAGGCTTGAACTTGGATTGGTTGCGTCATAAGTTGGATCA 623
| |||| |||||| | |||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 639 GATTACGGATCTGATTAAAGCAGGCTTGAACTTGGACTGGTTGCGTCAGAAGTTTGATCA 698
Query 624 GGCTTTGGAAAAGCAGATAGATTACGACACACGGATCAGAGAACTCGAGAAACAGGTCAA 683
|||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 699 GGCTTTGGAAAAACAGATAGCTTACGACACACGGATCGGAGAACTCGAGAAACAGGTCAA 758
Query 684 GAAGCGAAAGTTGGCATTGACAGAACTTGAAGCCGACCTGGAGAAAGAGAAAGCTGCAGC 743
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 GAAGCGAAAGCTGGCAGTGACAGAACTTGAAGCCGACCTGGAGAAAGAGAAAGCTGCAGC 818
Query 744 TTCAGCTTCATTGATGTTGTTTGATTGA 771
||| |||||||||||||||||||| |||
Sbjct 819 TTCGGCTTCATTGATGTTGTTTGACTGA 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474673662
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5