BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898786
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58320.1 | Symbols: | Ubiquitin-specific protease family C1... 811 0.0
> AT3G58320.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr3:21585567-21586328 REVERSE LENGTH=675
Length=675
Score = 811 bits (439), Expect = 0.0
Identities = 616/697 (88%), Gaps = 29/697 (4%)
Strand=Plus/Plus
Query 1 ATGAATTGTAACAATGTGGTAGTTTCCGATGCGGATACTGATGATGCCGCGAAAGAAGAT 60
||||| ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1 ATGAAATGTAACAATGTCATAGTTTCCGAAGCGGATACTGATGATACCGCGAAAGAAGAT 60
Query 61 CTGTTTGACGATGGTACAGTTGAAGAGGATCC-G--GATGATGATGCTTCATCTCTCCAC 117
|||||||| |||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct 61 CTGTTTGAGGATGGTACAGTTGAAGAGTATCCGGATGATGATGATGCTTCATCTCTCCAC 120
Query 118 CAATTGAAGTCCATGGTGGACACCTCGAAGACAGTACAAAATGGTGGTACAGGGTGTAAC 177
|||| ||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||
Sbjct 121 CAATGGAAGTCCATGGTGTACACCTCGAAGACAGTAGAAAATTTTGGTACAGAGTGTAAC 180
Query 178 AATAAGGCACCTATTTT-TGA-TACGTGGATTAATGATTTTCTAAAAGAGATTCTACCAG 235
||||||| | || |||| ||| | ||||| | || | | || |||| |
Sbjct 181 AATAAGGAATCT-TTTTATGAGT-CGTGG--T--GGA---T-T---AGTGATT-T----T 222
Query 236 CAAAGGAAACCATGGATGTCAATGGTTTTCAGGTTCTTACTTCACAGGTACAATCAGTGA 295
| ||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 223 C--TGGAAACCATTGATGTCAATGGTTTTCAGGTTCTTGCTTCACAAGTACAATCAGTGA 280
Query 296 GGCAGATCTTCAAAAGACACCCAGACATAGCCATAGGCTTCCGTCCAAAGAACCAACAGA 355
| || ||||||||||||||||| |||| ||| ||||| |||||||| |||||||||||||
Sbjct 281 GCCAAATCTTCAAAAGACACCCGGACACAGCAATAGGTTTCCGTCCTAAGAACCAACAGA 340
Query 356 TCAGGAAAGCATACATGGATGCACTTCTTAGGCTCATTGAGACACTGTGCCAGTCTCCAG 415
|||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 341 TCAGAAAAGCATACATGGATGCACTTCTTAGTCTCATTGAGACATTGTGCCAGTCTCCAG 400
Query 416 AGAAGCTCTCTGATGATGATCTGAGTAATGCTGACGAGACACTTGAT-GATCTGATTGAT 474
| |||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||
Sbjct 401 ATAAGCTCTCTGATGATGATCTGAGTAATGCTGATGAGACACTTG-TCGATCTGATTGAT 459
Query 475 GTTGGCTTTAAACTGGATTGGCTGAAGACGAAGCTGAATGAGGTCTCTGAAAAGAAGAAG 534
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 460 GTTGGCTTTAAATTGGATTGGCTGAAGACGAAGCTGAATGATGTCTCTGAAAAGAAGAAG 519
Query 535 ATGGGGCAGAGTAGTGTGGCTC-GGCTAGGAACAATGGAGGAAGAGTTGCAGAAGCTGAA 593
||||| |||||||||||| || |||||| ||||||||| ||| ||||||||||||||||
Sbjct 520 TTGGGGGAGAGTAGTGTGG-TCCGGCTAGAAACAATGGAAGAACAGTTGCAGAAGCTGAA 578
Query 594 GCACATGGTCTTGGATTTTGAAGCTCAGCTGCAGAAGGAAAAGGCGAAGGTATTGGCTGC 653
|||||||||||||||| ||||| ||||| ||||||||||||| | |||||| ||||||||
Sbjct 579 GCACATGGTCTTGGATCTTGAATCTCAGATGCAGAAGGAAAAAGAGAAGGTGTTGGCTGC 638
Query 654 GAGAGCTCCTTTTTCGTTCAAAGATGTTGTTTACTGA 690
||||||||| | |||||||||||| || ||||||||
Sbjct 639 AAGAGCTCCTCTATCGTTCAAAGATATTTTTTACTGA 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5