BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg898786 Length=690 Score E Sequences producing significant alignments: (Bits) Value AT3G58320.1 | Symbols: | Ubiquitin-specific protease family C1... 811 0.0 > AT3G58320.1 | Symbols: | Ubiquitin-specific protease family C19-related protein | chr3:21585567-21586328 REVERSE LENGTH=675 Length=675 Score = 811 bits (439), Expect = 0.0 Identities = 616/697 (88%), Gaps = 29/697 (4%) Strand=Plus/Plus Query 1 ATGAATTGTAACAATGTGGTAGTTTCCGATGCGGATACTGATGATGCCGCGAAAGAAGAT 60 ||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||||| Sbjct 1 ATGAAATGTAACAATGTCATAGTTTCCGAAGCGGATACTGATGATACCGCGAAAGAAGAT 60 Query 61 CTGTTTGACGATGGTACAGTTGAAGAGGATCC-G--GATGATGATGCTTCATCTCTCCAC 117 |||||||| |||||||||||||||||| |||| | |||||||||||||||||||||||| Sbjct 61 CTGTTTGAGGATGGTACAGTTGAAGAGTATCCGGATGATGATGATGCTTCATCTCTCCAC 120 Query 118 CAATTGAAGTCCATGGTGGACACCTCGAAGACAGTACAAAATGGTGGTACAGGGTGTAAC 177 |||| ||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||| Sbjct 121 CAATGGAAGTCCATGGTGTACACCTCGAAGACAGTAGAAAATTTTGGTACAGAGTGTAAC 180 Query 178 AATAAGGCACCTATTTT-TGA-TACGTGGATTAATGATTTTCTAAAAGAGATTCTACCAG 235 ||||||| | || |||| ||| | ||||| | || | | || |||| | Sbjct 181 AATAAGGAATCT-TTTTATGAGT-CGTGG--T--GGA---T-T---AGTGATT-T----T 222 Query 236 CAAAGGAAACCATGGATGTCAATGGTTTTCAGGTTCTTACTTCACAGGTACAATCAGTGA 295 | ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 223 C--TGGAAACCATTGATGTCAATGGTTTTCAGGTTCTTGCTTCACAAGTACAATCAGTGA 280 Query 296 GGCAGATCTTCAAAAGACACCCAGACATAGCCATAGGCTTCCGTCCAAAGAACCAACAGA 355 | || ||||||||||||||||| |||| ||| ||||| |||||||| ||||||||||||| Sbjct 281 GCCAAATCTTCAAAAGACACCCGGACACAGCAATAGGTTTCCGTCCTAAGAACCAACAGA 340 Query 356 TCAGGAAAGCATACATGGATGCACTTCTTAGGCTCATTGAGACACTGTGCCAGTCTCCAG 415 |||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 341 TCAGAAAAGCATACATGGATGCACTTCTTAGTCTCATTGAGACATTGTGCCAGTCTCCAG 400 Query 416 AGAAGCTCTCTGATGATGATCTGAGTAATGCTGACGAGACACTTGAT-GATCTGATTGAT 474 | |||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| Sbjct 401 ATAAGCTCTCTGATGATGATCTGAGTAATGCTGATGAGACACTTG-TCGATCTGATTGAT 459 Query 475 GTTGGCTTTAAACTGGATTGGCTGAAGACGAAGCTGAATGAGGTCTCTGAAAAGAAGAAG 534 |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 460 GTTGGCTTTAAATTGGATTGGCTGAAGACGAAGCTGAATGATGTCTCTGAAAAGAAGAAG 519 Query 535 ATGGGGCAGAGTAGTGTGGCTC-GGCTAGGAACAATGGAGGAAGAGTTGCAGAAGCTGAA 593 ||||| |||||||||||| || |||||| ||||||||| ||| |||||||||||||||| Sbjct 520 TTGGGGGAGAGTAGTGTGG-TCCGGCTAGAAACAATGGAAGAACAGTTGCAGAAGCTGAA 578 Query 594 GCACATGGTCTTGGATTTTGAAGCTCAGCTGCAGAAGGAAAAGGCGAAGGTATTGGCTGC 653 |||||||||||||||| ||||| ||||| ||||||||||||| | |||||| |||||||| Sbjct 579 GCACATGGTCTTGGATCTTGAATCTCAGATGCAGAAGGAAAAAGAGAAGGTGTTGGCTGC 638 Query 654 GAGAGCTCCTTTTTCGTTCAAAGATGTTGTTTACTGA 690 ||||||||| | |||||||||||| || |||||||| Sbjct 639 AAGAGCTCCTCTATCGTTCAAAGATATTTTTTACTGA 675 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33405707755 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5