BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898788
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58340.1 | Symbols: | TRAF-like family protein | chr3:21589... 773 0.0
AT3G58430.1 | Symbols: | TRAF-like family protein | chr3:21613... 329 2e-89
AT3G58410.1 | Symbols: | TRAF-like family protein | chr3:21604... 291 1e-77
AT3G58220.2 | Symbols: | TRAF-like family protein | chr3:21564... 246 2e-64
AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:19769... 137 2e-31
AT1G31370.1 | Symbols: | Ubiquitin-specific protease family C1... 130 3e-29
AT3G58370.1 | Symbols: | TRAF-like family protein | chr3:21595... 126 3e-28
AT3G44800.1 | Symbols: | Meprin and TRAF (MATH) homology domai... 119 5e-26
AT3G58380.1 | Symbols: | TRAF-like family protein | chr3:21597... 108 1e-22
AT2G05400.1 | Symbols: | Ubiquitin-specific protease family C1... 108 1e-22
AT1G31380.1 | Symbols: | TRAF-like family protein | chr1:11240... 108 1e-22
AT1G31390.1 | Symbols: | TRAF-like family protein | chr1:11243... 93.5 3e-18
AT1G31400.1 | Symbols: | TRAF-like family protein | chr1:11245... 86.1 6e-16
> AT3G58340.1 | Symbols: | TRAF-like family protein | chr3:21589071-21590401
REVERSE LENGTH=978
Length=978
Score = 773 bits (418), Expect = 0.0
Identities = 471/497 (95%), Gaps = 2/497 (0%)
Strand=Plus/Plus
Query 1 ATGGCCAAGGGAGTTGATAAGAAGTTTTGTTGGGAGATAAAGGATTTCTCCTCTTTGAAC 60
||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGCGAAGGCAGTTGATAAGAAGTTTTGTTGGGAGATAAAGAATTTCTCCTCTTTGAAC 60
Query 61 TCTGAGAGATGTAATTCTGTTCCAGTCGTGATTGGTGACTACAAATGGCGTCTTGTTGCC 120
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 TCTGAGAGATGTCATTCTGTTCCAGTCGTGATTGGTGACTGCAAATGGCGTCTTGTTGCC 120
Query 121 TTTCCTAAGGGATATAAAGCAGATTACTTTTCTTTGTATTTAGAAGTTGCTGATTTTCAA 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 121 TTTCCTAAGGGATATAAAGCAGATTACCTTTCTTTGTATTTAGAAGTTGCTGATTTTAAA 180
Query 181 TCATTGCCTTGTGGATGGAGAAGATACGTCAAATTTAGCGCAAGTATAGTAAATCAGCTT 240
|||||||||| ||||||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 181 TCATTGCCTTCTGGATGGAGAAGATACGTCAAATTTCGTGCATGTATAGTAAATCAGCTT 240
Query 241 TCGCAAGAACTCTCTGTACAACAAGAAACACACCGCTGGTTTGATCAGAATGCTCGCGGA 300
||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||
Sbjct 241 TCGCAAGAACTCTCTGTACAACAAGAAACGCAGCGCTGGTTTGATCAGAATGCTCCCGGA 300
Query 301 TGGGGTTTTGAAAACATGCTTCCACTTACCGAACTTAATGCCAAAGATGGTGGATTTTTG 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 TGGGGTTTTGAAAACATGCTTCTACTTACCGAACTTAATGCCAAAGATGGTGGATTTTTG 360
Query 361 GTAAATGGACAAGTCATGATTGTTGCTGAAGTAGAATTTCATGAAGTTATTGGCACACTA 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 GTAAATGGACAAGTCATGATTGTTGCTGAAGTAGAATTTCTTGAAGTTATTGGCACACTA 420
Query 421 GATGAATCAAAG-AATATTATTCTGTCTAATGATTTACTCAACAAGAGTCGAGAAGTGGC 479
||||||||| || || |||||| ||||| ||||||| ||||||||| || ||| |||||
Sbjct 421 GATGAATCAGAGGAA-ATTATTAAGTCTAGTGATTTAATCAACAAGACTCAAGAGGTGGC 479
Query 480 TCAACAAGTGAAGGAAA 496
|||||||||||||||||
Sbjct 480 TCAACAAGTGAAGGAAA 496
Score = 726 bits (393), Expect = 0.0
Identities = 457/488 (94%), Gaps = 3/488 (1%)
Strand=Plus/Plus
Query 432 GAATATTATTCTGTCTAATGATTTACTCAACAAGAGTCGAGAAGTGGCTCAACAAGTGAA 491
||| ||||||| | ||||||||||| ||||||||| || ||| |||||||||||||||||
Sbjct 493 GAA-ATTATTCAGCCTAATGATTTAATCAACAAGACTCAAGAGGTGGCTCAACAAGTGAA 551
Query 492 GGAAAGCATTGTTGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAGCCG 551
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 552 GGAAAGCATTGATGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAGACG 611
Query 552 TATTTTTGAAAAGCACCCAGAGATTGCAGTAGGGTTCCAAGTAAAGAACCAACATCTGAG 611
||||||| |||| || ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 612 TATTTTTAAAAAACATCCAGACATTGCAGTAGGATTCCAAGTAAAGAACCAACATCTGAG 671
Query 612 GAAAACATTCATGAATTTCCTGGTCAACGTAATTGAGACGCTGTGTCAATCTCTTCAGGA 671
||||||||||||||||||||| |||||||||||||||||| |||| |||||||| |||||
Sbjct 672 GAAAACATTCATGAATTTCCTTGTCAACGTAATTGAGACGATGTGCCAATCTCTCCAGGA 731
Query 672 GCTCTCAAATGAAGATCTTGTGGAAGTAGACATTGCACTGACATATTTGAAAGATGCGGG 731
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 732 GCTCTCAAATGAAGATCTTGTGGAAGTAGACATTGCGTTGACATACTTGAAAGATGCGGG 791
Query 732 ATTTAAGGTGGATTGGTTAGAGAAGAAGCTGGACCAAGTGAAAGAAAAGAAGGAGAAAGA 791
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 792 ATTTAAGGTGGATTGGTTAGAGAAGAAGCTGGACCATGTGAAAGAAAAGAAGGAGAAAGA 851
Query 792 ACAATCTGGTTTGGTCATACTCCAAGGAATTGAG-AAGCAGCTTCATGACTTGATGCACA 850
||| ||||||||| |||||||||||||||| ||| || || |||||||| ||||||||||
Sbjct 852 ACAGTCTGGTTTGATCATACTCCAAGGAATAGAGCAA-CAACTTCATGAATTGATGCACA 910
Query 851 AGTGTGAGAAGAAGAAGTCAGAGGTTTTGTCCATTGGAGCTCCTCTAAAGTTCGATGATG 910
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 911 AGTGTGAGAAGAAGAAGTCAGAGGTTCTGTCCGTTGGAGCTCCTCTAAAGTTCGATGATG 970
Query 911 TTGTTTGA 918
||||||||
Sbjct 971 TTGTTTGA 978
> AT3G58430.1 | Symbols: | TRAF-like family protein | chr3:21613163-21616183
REVERSE LENGTH=1617
Length=1617
Score = 329 bits (178), Expect = 2e-89
Identities = 277/325 (85%), Gaps = 6/325 (2%)
Strand=Plus/Plus
Query 504 TGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAG-CCGTATTTTTGAAA 562
||| ||||| ||||||||||||||||||||||| |||| |||||| | || |||| ||
Sbjct 990 TGTCAATGGCTTTCAAGTTCTTCCTTCACAGGTGGAATATGTGAGATC-AATATTTG-AA 1047
Query 563 AG-CACCCAGAGATTGCAGTAGGGTTCCAAGTAAAGAACCAACATCTGAGGAAAACATTC 621
|| ||||| || |||||||||| ||||| || |||||||||||||||||||| | ||| |
Sbjct 1048 AGACACCCTGACATTGCAGTAGAGTTCCGAGCAAAGAACCAACATCTGAGGACATCATGC 1107
Query 622 ATGAATTTCCTGGTCAACGTAATTGAGACGCTGTGTCAATCTCTTCAGGAGCTCTCAAAT 681
|||| ||| ||| | | |||||||||| ||||| || || ||| | ||||||||||||
Sbjct 1108 ATGATTTTTCTGCTTAGTTTAATTGAGACACTGTGCCAGTCACTTGAAGAGCTCTCAAAT 1167
Query 682 GAAGATCTTGTGGAAGTAGACATTGCACTGACATATTTGAAAGATGCGGGATTTAAGGTG 741
|||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||||
Sbjct 1168 GAAGATCTTGTGGAAGCAGACATTGCATTGACATATGTGAAAGATGCAGGATTTAAGGTG 1227
Query 742 GATTGGTTAGAGAAGAAGCTGGACCAAGTGAAAGAAAAGAAGGAGAAAGAACAATCTGGT 801
|||||||| |||||||||||||||||||| |||||||||||||||||||||| |||| |
Sbjct 1228 GATTGGTTGGAGAAGAAGCTGGACCAAGTAAAAGAAAAGAAGGAGAAAGAACTGTCTGAT 1287
Query 802 TTGGT-CATACTCCAAGGAATTGAG 825
|||| || || |||| ||| |||
Sbjct 1288 ATGGTTCAG-CTACAAGAAATGGAG 1311
> AT3G58410.1 | Symbols: | TRAF-like family protein | chr3:21604871-21606229
REVERSE LENGTH=987
Length=987
Score = 291 bits (157), Expect = 1e-77
Identities = 275/332 (83%), Gaps = 8/332 (2%)
Strand=Plus/Plus
Query 490 AAGGAAAGCATTGTTGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAGC 549
||||||||||| | || || || |||||||||||||||||||||||||||||||||||
Sbjct 538 AAGGAAAGCATGGAGGTCAACGGATTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAGA 597
Query 550 CGTATTTTTGAAA-AGCACCCAGAGATTGCAGT-AGGGTTCCAAGTAAAGAACCAACATC 607
| ||| ||||||| | ||||| || |||||| | || |||| | |||||||||| |||
Sbjct 598 CTTATATTTGAAAGA-CACCCTGACATTGCA-TCAGAATTCCGTGCAAAGAACCAATATC 655
Query 608 TGAGGAAAACATTCATGAATTTCCTGGTCAACGTAATTGAGACGCTGTGTCAATCTCTTC 667
|||||||| ||| |||| ||||||| ||| | | ||||||||||||| || || || |
Sbjct 656 TGAGGAAAGCATGCATGGATTTCCTTCTCAGCCTTGTTGAGACGCTGTGCCAGTCACTGC 715
Query 668 AGGAGCTCTCAAATGAAGATCTTGTGGAAGTAGACATTGCACTGACATATTTGAAAGATG 727
| ||| |||| ||||||||||||||||||| |||||| || |||||||| ||||||||||
Sbjct 716 AAGAGTTCTCCAATGAAGATCTTGTGGAAGCAGACATCGCGCTGACATACTTGAAAGATG 775
Query 728 CGGGATTTAAGGTGGATTGGTTAGAGAAGAAGCTGGACCAAGTGAA-AGAAAAGAAGGAG 786
|||| || |||||||| ||||| ||||| ||| |||||||||| || ||| |||||||||
Sbjct 776 CGGGGTTCAAGGTGGACTGGTTGGAGAAAAAGTTGGACCAAGT-AAGAGATAAGAAGGAG 834
Query 787 AAAGAACAATCTGGTTTGGTCATA-CTCCAAG 817
||||| | ||| |||||| || | |||||||
Sbjct 835 AAAGAGCGGTCTTGTTTGGCCA-AGCTCCAAG 865
> AT3G58220.2 | Symbols: | TRAF-like family protein | chr3:21564450-21566482
REVERSE LENGTH=1636
Length=1636
Score = 246 bits (133), Expect = 2e-64
Identities = 252/309 (82%), Gaps = 10/309 (3%)
Strand=Plus/Plus
Query 479 CTCAACAAGTGAAGGAAAGCATTGTTGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAG 538
|||||||||||||||||| ||| | | | ||||||||||||||||||||||||||||| |
Sbjct 949 CTCAACAAGTGAAGGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGT-G 1007
Query 539 A-ATCT-GTGAGCCGTATTTTTGAAAAGCACCCAGAGATTGCAGTAGGGTTCCAA-GTAA 595
| | || |||||||||||||| |||| ||||||| |||||| |||| ||| || | ||
Sbjct 1008 ACA-CTTGTGAGCCGTATTTTAAAAAAATACCCAGACATTGCATTAGGATTC-AATGCAA 1065
Query 596 AGAACCAACATCTGAGGAAAACATTCATGAATTTCCTGGTCAACGTAATTGAGACGCTGT 655
|||||| ||||||||||| | ||| ||||||| |||| ||| | |||| ||||| ||||
Sbjct 1066 AGAACCGACATCTGAGGACAGCATGCATGAATGTCCTCATCAGCCTAATCGAGACACTGT 1125
Query 656 GTCAATCTCTTCAGGAGCTCTCAAATGAAGATCTTG-TGGAAGTAGACATTGCACT-GAC 713
| || || | |||||||||||| | |||||| | | || ||| ||||| |||||| |
Sbjct 1126 GCCAGTCACCACAGGAGCTCTCAGACGAAGATATGGATG-AAGCAGACAATGCACTAGT- 1183
Query 714 ATATTTGAAAGATGCGGGATTTAAGGTGGATTGGTTAGAGAAGAAGCTGGACCAAGTGAA 773
||| || ||||||| || ||||||||||||||||| || ||||||||| | |||| ||
Sbjct 1184 ATACGTGCAAGATGCAGGCTTTAAGGTGGATTGGTTGGACAAGAAGCTGAAGGAAGTAAA 1243
Query 774 AGAAAAGAA 782
|||||||||
Sbjct 1244 AGAAAAGAA 1252
> AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:1976918-1978553
FORWARD LENGTH=1082
Length=1082
Score = 137 bits (74), Expect = 2e-31
Identities = 242/322 (75%), Gaps = 16/322 (5%)
Strand=Plus/Plus
Query 494 AAAGCATTGTTGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGA-GCCGT 552
||| ||| | ||| |||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 625 AAACCATAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGATTCTGTGAAGC-GT 683
Query 553 ATT-TTTGAAAAGCACCCAGAGATTGCAGT-AGGGTTCCAAGT-AAAGAA-CCAACATCT 608
|| |||||||| ||| ||| |||| | | | || | | ||| || ||| || |
Sbjct 684 -TTGTTTGAAAAAAACCTAGATATTGTA-TCAAAATTTCGTCTTAAA-AATCCAT-ATTT 739
Query 609 GAGGAAAACATTCATGAATTTCCTGGTCAACGTAATTGAGACGCTGTGTCAATCTCTTCA 668
|| || | | ||||||| |||| | | ||| || |||||||||||||| | |||
Sbjct 740 GAAGACTGCGTGCATGAATCTCCTCCTGAGTTTAACCGAAACGCTGTGTCAATCGCCTCA 799
Query 669 GGAGCTCTCAAATGAAGATCT-TGTGGAAGTAGACATTGCACTGACATATTTGAAAGATG 727
|| ||||| ||||| | ||| | || | | || |||||||| ||||||||| |||
Sbjct 800 AGAACTCTCCAATGATGGTCTCTCTG-ATGCAGGTGTTGCACTGGCATATTTGATAGAAA 858
Query 728 C-GGGATTTAAGGTGGATTGGTTAGAGAAGAAGCTGGACCAAGTGAAAG-AAAAGAAGGA 785
| ||| || ||| |||||||||| |||||||| || || || | |||| |||||||| |
Sbjct 859 CAGGGCTT-AAGTTGGATTGGTTGGAGAAGAAACTTGATGAATT-AAAGGAAAAGAAGAA 916
Query 786 GAAAGAACAATCTGGTTTGGTC 807
||||||| | ||| ||||||||
Sbjct 917 GAAAGAAGAGTCTTGTTTGGTC 938
> AT1G31370.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr1:11238298-11239363 REVERSE LENGTH=582
Length=582
Score = 130 bits (70), Expect = 3e-29
Identities = 124/148 (84%), Gaps = 12/148 (8%)
Strand=Plus/Plus
Query 486 AGTGAAGGAAAGCATTGTTGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGT 545
||||| ||||||||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 315 AGTGATGGAAAGCATCGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGT 374
Query 546 GA-GCCGTATT-TTTGAAAAGCACCCAGAGATTGCAGTAGGG-TTCCAAGT--AAAGAAC 600
|| | || || ||||||||||||||||| |||||| | | |||| || |||||||
Sbjct 375 GAAGA-GT-TTGTTTGAAAAGCACCCAGACATTGCA-TCGAAATTCC--GTCCAAAGAAC 429
Query 601 CAACATCTGAGGAA-AACATTCATGAAT 627
| ||||||||| || ||||| | |||||
Sbjct 430 CCACATCTGAG-AACAACATCCTTGAAT 456
> AT3G58370.1 | Symbols: | TRAF-like family protein | chr3:21595774-21596538
REVERSE LENGTH=660
Length=660
Score = 126 bits (68), Expect = 3e-28
Identities = 239/318 (75%), Gaps = 26/318 (8%)
Strand=Plus/Plus
Query 486 AGTGAAGGAAAGCATTGTTGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGT 545
||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 207 AGTAAAGGAAAGCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGT 266
Query 546 GA-GCCGTATTTTTGAAA-AGCACCCAGAGATTGCAGT-AGGGTTCCAAGT--AAAGAAC 600
|| | |||| ||||||| | || ||||| ||||| | | |||| || ||||||
Sbjct 267 GAAGT-GTATATTTGAAAGA-CATCCAGACTTTGCA-TCAAAATTCC--GTCCAAAGAAT 321
Query 601 CAACATCT-GAGGAAAACATTCATGAATTTCCTGGTCA--ACGTAATTGAGACGCTGTGT 657
| || || || | ||||| ||||| | |||| | | || ||||| ||||| ||||
Sbjct 322 CGGCA-CTTGAAGTCAACATACATGACTGTCCTCCT-AGGAC-TAATTAAGACGTTGTGC 378
Query 658 CAATCT-CTTCAGGAGCTCTCAAATGAAGATCTTGTGGAAGTAGACATTGCACTGACATA 716
|| | | | | |||||||| | | || ||||| | |||| | | ||||| || ||||
Sbjct 379 CAGT-TACCTGAGGAGCTCACTGACGATGATCTGGACGAAGCATCCGTTGCAGTGTCATA 437
Query 717 TTTG-AAAGATGCG-GGATTTAAGGT-GGATTGGTTAGAGAAGAAGCTGGACC-AAGTGA 772
|| ||| ||| | || || ||| | ||||||||| ||||||||||| | | |||| |
Sbjct 438 CGTGGAAA-ATG-GTGGCTT-AAGATTGGATTGGTTGGAGAAGAAGCTTG-CGGAAGTTA 493
Query 773 AAGAAAAGAAGGAGAAAG 790
| | ||||||| ||||||
Sbjct 494 AGGCAAAGAAGAAGAAAG 511
> AT3G44800.1 | Symbols: | Meprin and TRAF (MATH) homology domain-containing
protein | chr3:16343333-16346027 FORWARD LENGTH=1695
Length=1695
Score = 119 bits (64), Expect = 5e-26
Identities = 218/290 (75%), Gaps = 20/290 (7%)
Strand=Plus/Plus
Query 504 TGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGA-GCCGTATTTTTGAAA 562
||| |||||||||||||||||||||||||||| |||||||||| || |||| || ||||
Sbjct 525 TGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCTGTGAAGC-GTATATTCGAAA 583
Query 563 -AGCACCCAGAGATTGCAGTAGGGTTCCAAGTAAAGAACCAACA-TCTGAGGAAAACAT- 619
| |||||| | || ||| ||| ||||| || |||||||||||| | ||||| | |||
Sbjct 584 GA-CACCCATACATGGCATTAGAGTTCCGAGCAAAGAACCAACAGT-TGAGGGCATCATG 641
Query 620 TCATGAATTTCCTGGTCAACGTAATTGAGACGCTGTGTCAATCTCTTCAGGAGCTCTCAA 679
| || ||| |||| ||| | |||| ||||| |||| || || || || || | || |
Sbjct 642 T-ATAAATGTCCTCCTCAGCCTAATCAAGACGTTGTGCCAGTCACTGCAAGATATTTCCA 700
Query 680 ATGAAGATCTTGTGG-AAGTAGA-CATTGCACTGACATATT-TG-AAAGATGCGGGATTT 735
||| || || | | || ||| || | ||| |||| | || ||| || | ||||||
Sbjct 701 TTGATGACCTAG-GCCAAACAGAGCAA-GTACTAACAT-TCCTGCAAA-ATTCTGGATTT 756
Query 736 AAGGTGGATTGGTTAGAGAAG-AAGCTGGACCAAGTGAAAG-AAAAGAAG 783
|||||||||||| | ||| | || ||||| |||| |||| ||||||||
Sbjct 757 AAGGTGGATTGGCTGGAGC-GTAAACTGGAGGAAGT-AAAGGAAAAGAAG 804
> AT3G58380.1 | Symbols: | TRAF-like family protein | chr3:21597799-21599568
REVERSE LENGTH=1236
Length=1236
Score = 108 bits (58), Expect = 1e-22
Identities = 234/313 (75%), Gaps = 36/313 (12%)
Strand=Plus/Plus
Query 494 AAAGCATTGTTGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGA-GCCGT 552
||| ||||| ||| |||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 616 AAATCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGC-GT 674
Query 553 ATTTTTGAAA-AGCACCCAGAGATTGCAGT-AGG-GTTCCAAGTAAA-GAA-CCAACATC 607
|| ||||||| | ||||| | |||||| | || || || | || ||| ||| ||
Sbjct 675 ATATTTGAAATAT-ACCCAAACATTGCA-TCAGAAGTCCCT--TCAATGAAACCATG-TC 729
Query 608 TGAGGAAAACATTCATGAAT-T--TCCT-GGTCAACGTAATTGAGACGCTGTGTCAATCT 663
||| || | || ||||||| | |||| || || ||||||| |||||||| ||| ||
Sbjct 730 TGAAGACATTATACATGAATGTACTCCTCGG--AA--TAATTGAAACGCTGTGCCAA-CT 784
Query 664 -CTT-CAGGAGCTCTCAAATGAA-GATCTTG-TGGAAGTAGACATTGCACTGACATATT- 718
| | | ||||||||| || | ||||| | || ||| | ||||||| | ||||
Sbjct 785 GCCTGC-GGAGCTCTCTGAT-ACTGATCTGGATG-AAGCATCCATTGCAGTTT--TATTC 839
Query 719 -TGAAAGATGCG-GGATTTAAGGTGGATTGGTTAGAGAAGAAGCTGGACCAAGTGAAAG- 775
|| | | | | || ||||| ||||||||||| ||||||||||| | |||| ||||
Sbjct 840 GTGTCACAAG-GTGGCTTTAAAGTGGATTGGTTGGAGAAGAAGCTCAAGGAAGT-AAAGG 897
Query 776 AAAAGAAGGAGAA 788
|||||||| ||||
Sbjct 898 AAAAGAAGAAGAA 910
> AT2G05400.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr2:1974886-1976570 FORWARD LENGTH=1415
Length=1415
Score = 108 bits (58), Expect = 1e-22
Identities = 239/324 (74%), Gaps = 22/324 (7%)
Strand=Plus/Plus
Query 493 GAAAGCATTGTTGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGA-GCCG 551
|||| ||| | ||| ||||| |||||||||||||||||||||||||||| || || | |
Sbjct 732 GAAACCATAGATGTCAATGGATTTCAAGTTCTTCCTTCACAGGTAGAATATGCGAAGTC- 790
Query 552 TATT-TTTGAAA-AGCACCCAGAGATTGCAGT-AGGGTTCCAAGT--AAAGAA-CCA-AC 604
| || ||||||| | || | ||| |||||| | | |||| || |||||| ||| ||
Sbjct 791 T-TTATTTGAAAGA-CATCTAGATATTGCA-TCAAAATTCC--GTCCAAAGAATCCATAC 845
Query 605 ATCTGAGGAAAACATTCATGAATTTCCTGGTCAACGTAATTGAGACGCTGTGTCAATCTC 664
|| | || | | ||||||| |||| | | ||| | ||| | ||||||||||
Sbjct 846 --CTAAAGACGGCGTACATGAATGTCCTCTTGAGTTTAACCCAAACGATATGTCAATCTC 903
Query 665 TTCAGGAGCTCTCAAATGAAGATCT-TGTGGAAGTAGACATTGCACTGACATATTTGAAA 723
||| || ||||| ||||| ||||| | || | | || | |||| || ||||||||| |
Sbjct 904 CTCAAGAACTCTCCAATGATGATCTCTCTG-ATGCAGGCGCTGCATTGGCATATTTGAGA 962
Query 724 GATGC-GGGATTTAAGGTGGATTGGTTAGAGAAGAAGCTGGACCAAGTGAAAG-AAAAGA 781
|| || ||| ||| || |||||||||| |||||||| || | |||| |||| ||||||
Sbjct 963 GAAGCAGGG-TTTGAGTTGGATTGGTTGGAGAAGAAACTTAATGAAGT-AAAGGAAAAGA 1020
Query 782 AGGAGAAAGAACAATCTGGTTTGG 805
| |||||||| | || ||||||
Sbjct 1021 AAAAGAAAGAAGAGGCTTGTTTGG 1044
> AT1G31380.1 | Symbols: | TRAF-like family protein | chr1:11240451-11241099
REVERSE LENGTH=528
Length=528
Score = 108 bits (58), Expect = 1e-22
Identities = 118/146 (81%), Gaps = 8/146 (5%)
Strand=Plus/Plus
Query 486 AGTGAAGGAAAGCATTGT-TGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTG 544
||||| |||||||| ||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 129 AGTGATGGAAAGCA-TGTATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATTTG 187
Query 545 TGA-GCCGTATTTTTGAAAAGCACCCAGAGATTGCAGT-AGGGTTCCAAGTAAAGAACCA 602
||| | || | ||||||||||||||||| || | | | | |||| | |||||||
Sbjct 188 TGAAGA-GTCTGTTTGAAAAGCACCCAGATATCGAA-TCAAAACTCCATCTGAAGAACCC 245
Query 603 ACATCTGAGGAA-AACATTCATGAAT 627
|||| |||| || ||||| | |||||
Sbjct 246 ACATATGAG-AATAACATACTTGAAT 270
> AT1G31390.1 | Symbols: | TRAF-like family protein | chr1:11243191-11244392
REVERSE LENGTH=807
Length=807
Score = 93.5 bits (50), Expect = 3e-18
Identities = 70/80 (88%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 493 GAAAGCATTGTTGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAGCCGT 552
|||||||| | | | |||||||||||||||||||||||||||||||||||||||| | |
Sbjct 460 GAAAGCATCGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAACAAT 519
Query 553 ATTTTTGAAAAGCACCCAGA 572
| ||||| |||||||||||
Sbjct 520 CTCTTTGAGAAGCACCCAGA 539
> AT1G31400.1 | Symbols: | TRAF-like family protein | chr1:11245225-11246481
REVERSE LENGTH=837
Length=837
Score = 86.1 bits (46), Expect = 6e-16
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 504 TGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAGCCGTATTTTTGAAAA 563
||| |||||||||||||||||||||||||||||||||||||||| | | | || ||||
Sbjct 462 TGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAACAATCTCTTCAAAAA 521
Query 564 GCACCCAGAGATTGCA 579
|||||||| ||||||
Sbjct 522 TCACCCAGACATTGCA 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5