BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898803
Length=2679
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56150.1 | Symbols: EIF3C, ATEIF3C-1, EIF3C-1, ATTIF3C1, TIF... 2023 0.0
> AT3G56150.1 | Symbols: EIF3C, ATEIF3C-1, EIF3C-1, ATTIF3C1, TIF3C1
| eukaryotic translation initiation factor 3C | chr3:20833584-20837157
REVERSE LENGTH=3033
Length=3033
Score = 2023 bits (1095), Expect = 0.0
Identities = 1779/2102 (85%), Gaps = 75/2102 (4%)
Strand=Plus/Plus
Query 602 CTTGGGAGAAGATGCTAAGCAAGAAAGATAAGCTTATGGAGAAGTTGTAT-AGTAAAGAC 660
|||||||||||||||| ||||| |||||||||||| |||||||| | || | ||||||
Sbjct 765 CTTGGGAGAAGATGCTGAGCAAAAAAGATAAGCTTTTGGAGAAGCT-AATGAATAAAGAT 823
Query 661 CCTAAAGAGATCACATGGGAATGGGTCAACCAA-AAGTTCAAAGAAGTTGTGGCTGCCCG 719
|||||||||||||| ||||| |||||||| ||| |||||||| ||| |||||||||| ||
Sbjct 824 CCTAAAGAGATCACTTGGGACTGGGTCAA-CAAGAAGTTCAAGGAAATTGTGGCTGCTCG 882
Query 720 TGGCAGGAAGGGAACTGCACGATTTGAACTGGTTGATCAGCTTACACACCTGACAAGGAT 779
||| | ||||| ||||| |||||||| || |||||||||||||| ||| |||||| |||
Sbjct 883 TGGAAAAAAGGGCACTGCTCGATTTGAGCTAGTTGATCAGCTTACGCACTTGACAAAGAT 942
Query 780 TGCCAAAACTCCAGCACAGAAACTTGAAATCTTGTTTAGTGTTATTTCTGCACAGTTTGA 839
|||||| ||||| |||||||| ||||||||||||||||| |||||||| || ||||||||
Sbjct 943 TGCCAAGACTCCTGCACAGAAGCTTGAAATCTTGTTTAGCGTTATTTCGGCTCAGTTTGA 1002
Query 840 TGTGAATCCTGGTCTCAGCGGACACATGCCTATCAATGTCTGGAAGAAGTGTGTGAATAA 899
||||||||| ||||||||||| |||||||||||||||||||||||||| || ||| |||
Sbjct 1003 TGTGAATCCAGGTCTCAGCGGGCACATGCCTATCAATGTCTGGAAGAAATGCGTGCTTAA 1062
Query 900 CATTCTTACAATACTAGACATTCTTGTCAAATATGA-TAACATCGTTGTTGATGACACGG 958
||| || || ||||| |||||||| ||||| || | |||||| ||||| |||||||| |
Sbjct 1063 CATGCTCACCATACTGGACATTCTCGTCAAGTA-CAGTAACATTGTTGTGGATGACACAG 1121
Query 959 TTGAGCCTGATGAGAATGAAACTTCAAAACCAGA-AGATTTTGATGGAAAAATCCGGGTC 1017
|||||||||||||||| ||||||||||| ||| | ||||| |||||||||||| ||||||
Sbjct 1122 TTGAGCCTGATGAGAACGAAACTTCAAAGCCA-ACAGATTATGATGGAAAAATTCGGGTC 1180
Query 1018 TGGGGAAACCTT-GTTGCATTCGTGGAGAGGATAGACACTGAATTTTTCAAGAGTTTGCA 1076
|||||||| || ||||||||| |||||||| | |||||||| |||||||||||||||||
Sbjct 1181 TGGGGAAA-TTTGGTTGCATTCTTGGAGAGGGTTGACACTGAGTTTTTCAAGAGTTTGCA 1239
Query 1077 GTGCATAGATCCTCATACACGTGAGTATGTGGAGAGATTGAGAGATGAGCCGATGTTCTT 1136
||||| |||||||| || ||||||||||| ||||| | || |||||||| ||||||||
Sbjct 1240 ATGCATTGATCCTCACACCCGTGAGTATGTTGAGAGGCTAAGGGATGAGCCCATGTTCTT 1299
Query 1137 AGCTCTTGCTCAAAACATCCAGGACTACTTTGAGCGGTCT-GGTGACTATAAAGCTGCTG 1195
|| |||||||| |||||||||||||||||||||||| | ||||| | |||||||||||
Sbjct 1300 GGCCCTTGCTCAGAACATCCAGGACTACTTTGAGCGG-ATGGGTGATTTTAAAGCTGCTG 1358
Query 1196 CAAAGGTGGCCTTAAGACAAGTTGAGTTAATTTACTACAAGCCTCAGGAAGTTTATGATG 1255
||||||| |||||||||| |||||| ||| ||||||||||| ||||||||||||||||
Sbjct 1359 CAAAGGTAGCCTTAAGACGTGTTGAGGCAATATACTACAAGCCCCAGGAAGTTTATGATG 1418
Query 1256 CCATGAGGAAACTGGCTGAGCTGGTGGTGGAAGAAGATGAAGAAGAAGATAGTGAGGAGC 1315
| ||||||||| |||||||| | ||||||||| | | ||||||| | | | |||||||
Sbjct 1419 CAATGAGGAAATTGGCTGAG-T--TGGTGGAAG-A-A-GAAGAAG-A-A-ACTGAGGAGG 1469
Query 1316 CCAAAGAGGAAACTGGACCT-C--CTTCATTCATTGTTGTTCCAGAGGTTGTTCCTCGTA 1372
|||||||||||| ||||||| | ||||||| ||||||||||| ||||||||||| ||||
Sbjct 1470 CCAAAGAGGAAAGTGGACCTCCTACTTCATTTATTGTTGTTCCGGAGGTTGTTCCCCGTA 1529
Query 1373 AGCCTACCTTCCCAGAGAGTAGTCGAGCTATGATGGATGTTCTTGTCTCTCTTATATACA 1432
||||||||||||||||||| || ||||||||||||||| ||||||| || ||||| ||||
Sbjct 1530 AGCCTACCTTCCCAGAGAGCAGCCGAGCTATGATGGATATTCTTGTGTCCCTTATCTACA 1589
Query 1433 -AATATGGAGATGAACGAACTAAAGCCCGTGCGATGTTATGTGATATCTATCACCATGCT 1491
|| |||||||||| || || ||||| ||||||||| ||||||||||| |||||||||||
Sbjct 1590 GAA-ATGGAGATGAGCGGACCAAAGCGCGTGCGATGCTATGTGATATCAATCACCATGCT 1648
Query 1492 TTAGTGGACAACTTTGTGACAGCTAGGGATTTGTTGCTGATGAGTCATCTGCAGGACAAT 1551
||| |||||||||||||||| ||||| || |||||||||||||||||||||| |||||
Sbjct 1649 TTAATGGACAACTTTGTGACTGCTAGAGACCTGTTGCTGATGAGTCATCTGCAAGACAAC 1708
Query 1552 ATTCAGCACATGGACATCTCAACCCAGATCCTCTTTAATAGGTCCATGGCACAGCTTGGT 1611
|| |||||||||||||||||||| ||||| |||||||| ||| ||||||| |||||||||
Sbjct 1709 ATCCAGCACATGGACATCTCAACACAGATTCTCTTTAACAGGACCATGGCGCAGCTTGGT 1768
Query 1612 CTCTGCGCATTCCGGGTTGGAATGATTACAGAGGCTCACAGCTGCCTCTCTGAGTTGTAC 1671
|| ||||| ||||||| ||||||||| || ||| | || |||||||| || ||| |||||
Sbjct 1769 CTTTGCGCCTTCCGGGCTGGAATGATCACTGAGTCCCATAGCTGCCTTTCCGAGCTGTAC 1828
Query 1672 TCTGGTCAAAGGGTGCGGGAGTTACTTGCTCAAGGTGTCTCGCAAAGCCGCTACCATGAG 1731
||||||||||| ||| | ||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 1829 TCTGGTCAAAGAGTGAGAGAGTTGCTTGCCCAAGGTGTCTCGCAAAGCCGATACCATGAG 1888
Query 1732 AAGACTCCC-GAGCAGGAAA-GATTGGAGAGGAGACGACAGATGCCATATCACATGCACA 1789
|| || ||| |||||||||| || |||| |||||| |||| ||||| || |||||||||
Sbjct 1889 AAAAC-CCCGGAGCAGGAAAGGA-TGGAAAGGAGAAGACAAATGCCGTACCACATGCACT 1946
Query 1790 TAAACCTTGAGCTTCTCGAAGCTGTTCATCTCATCTGTGCCATGCTGCTAGAGGTCCCTA 1849
|||||||||||||||| || || ||||||||||||||||||||||| || || ||||| |
Sbjct 1947 TAAACCTTGAGCTTCTGGAGGCAGTTCATCTCATCTGTGCCATGCTTCTTGAAGTCCCAA 2006
Query 1850 ACATGGCAGCCAATTCTCACGATGTCAAACGCAAG-GTGATTAGCAAGAATTTCCGTCGC 1908
||||||| || || || ||||||| ||||||| || |||||||||||||||||||| |||
Sbjct 2007 ACATGGCTGCAAACTCGCACGATGCCAAACGC-AGAGTGATTAGCAAGAATTTCCGCCGC 2065
Query 1909 CTGCTCGAGATCAGTGAGAGGCAAGCATTCACTGCTCCTCCTGAGAACGTTCGTGACCAT 1968
||||||||||||||||| ||||||||||||||||| || |||||||| || |||||||||
Sbjct 2066 CTGCTCGAGATCAGTGAAAGGCAAGCATTCACTGCACCGCCTGAGAATGTACGTGACCAT 2125
Query 1969 GCCATGGCAGCAACCCGAGCTCTGACTAAAGGAGACTTCCAAAAGGCTTTTGAAGTTGTG 2028
| ||||||||| ||| |||| ||||| |||||||| ||||| ||||| ||||||||| ||
Sbjct 2126 GTCATGGCAGCCACCAGAGCCCTGACCAAAGGAGATTTCCAGAAGGCGTTTGAAGTTTTG 2185
Query 2029 AAGTCTCTTGATGTCTGGAAACTGTTCAAGAATCGGGAAACCATCCTTGATATGGTGAAG 2088
|| |||||||| ||||||| ||| ||||||| || || | ||||||||| |||||||||
Sbjct 2186 AACTCTCTTGAGGTCTGGAGGCTGCTCAAGAACCGTGACAGCATCCTTGACATGGTGAAG 2245
Query 2089 GATAGGATCAAAGAAGAGGCTTTGAGGACTTACCTCTTCACATACTCG-GCCTCCTACGA 2147
||||||||||||||||||||| | ||||||||||| ||||||||||| || || || ||
Sbjct 2246 GATAGGATCAAAGAAGAGGCTCTAAGGACTTACCTATTCACATACTCAAGC-TCTTATGA 2304
Query 2148 GTCCCTAAGTCTAGATCAGCTTGCCAAGATGTTTGATC-TCTCTGAGAAC-CAAGTCCAC 2205
|||| | ||||| |||||||| ||||| |||||||| | |||||||| | || ||||||
Sbjct 2305 GTCCTTGAGTCTTGATCAGCTGGCCAAAATGTTTGA-CGTCTCTGAGC-CGCAGGTCCAC 2362
Query 2206 AGCATCGTGAGCAAGATGATGATCAATGAAGAACTCCATGCAAGCTGGGACCAACCTACA 2265
||||| ||||| ||||||||||| ||||| ||||| |||||||||||||| || || |||
Sbjct 2363 AGCATTGTGAGTAAGATGATGATTAATGAGGAACTGCATGCAAGCTGGGATCAGCCAACA 2422
Query 2266 CGTTGCATAATCTTTCACGATGTCCAGCACACCAGGTTGCAAACCTTGGCGTTCCAGTTA 2325
|| ||||| |||| || || || || |||| ||| || ||| | ||||| |||||||||
Sbjct 2423 CGATGCATCGTCTTCCATGAAGTGCAACACAGCAGATTACAATCATTGGCTTTCCAGTTA 2482
Query 2326 ACTGAGAAACT-TGCTG-TTCTTG-CGGAGAGCAACGAAAGAGCAATGGAGGCTAGGACC 2382
|| |||||||| | | | || ||| | || ||||| || || |||||||| |||| |||
Sbjct 2483 ACGGAGAAACTCT-C-GATT-TTGGCAGAAAGCAATGAGAGGGCAATGGAATCTAGAACC 2539
Query 2383 GGTGGTGGTGGTGTGGATCTAAGCTCAAGGAGAAGAGACAACAATCAAGAATATGCAGGG 2442
||||| |||||| ||||||| || ||||||||||| ||||||||||| || ||||||||
Sbjct 2540 GGTGGAGGTGGTCTGGATCTGAGTTCAAGGAGAAGGGACAACAATCAGGACTATGCAGGA 2599
Query 2443 GGAGCA---GGTGGTGGA--A-AGTGGCAAGACAATATGTCTTACA-ATCAAGGAAGACA 2495
| |||| |||||||| | | ||||||||||| | |||| | |||||||||||
Sbjct 2600 GCAGCATCAGGTGGTGGTGGATATTGGCAAGACAAGGCGAATTACGGA-CAAGGAAGACA 2658
Query 2496 AGGTTACAATGGCGGTGGTAGATCTGGTTATGGTGGTAACA-GATCATCTGGACATGCAA 2554
||| ||| | ||||| ||||||||||| | | ||||||||||||| ||
Sbjct 2659 AGG---CAA---C------AGATCAGGTTATGGTGG-AGGAAGATCATCTGGACAA--AA 2703
Query 2555 -GAGAC--TGGTCAGGTCAAAATCGAGGGAGTGGTGGGTATGGAGGAAGAGGTGGAACAG 2611
| | | |||||||| || || ||||| || | ||||||| |||||||| ||| |||
Sbjct 2704 TG-GTCAGTGGTCAGGGCAGAACCGAGG-AG-GA-GGGTATGCAGGAAGAGTTGGTTCAG 2759
Query 2612 GGAACAGAGGAATGCAGATGGATGGCACAAGCCGTATGGTAAGTCTTAACCGAGGTGTTC 2671
| |||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 2760 GAAACAGAGGTATGCAGATGGATGGCTCAAGCCGTATGGTGAGTCTTAACCGAGGTGTTC 2819
Query 2672 GT 2673
||
Sbjct 2820 GT 2821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133042732836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5