BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898832
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58760.1 | Symbols: | Integrin-linked protein kinase family... 2146 0.0
> AT3G58760.1 | Symbols: | Integrin-linked protein kinase family
| chr3:21728714-21731928 FORWARD LENGTH=1646
Length=1646
Score = 2146 bits (1162), Expect = 0.0
Identities = 1344/1427 (94%), Gaps = 31/1427 (2%)
Strand=Plus/Plus
Query 1 ATGACGATTAAGCCTAAATCGCCGGCGAGATTCAAGCTAGGGAGGCAATCTTCGCTTGCG 60
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 43 ATGACGATTAAGCCTAAATCGCCGGCGAGATTCAAGCTAGGTAGGCAGTCTTCGCTTGCG 102
Query 61 CCGGAATCAAGAACCCCGATAGAGACGTTAACGGAAGATGAGGACGACGAGTT-G--GCG 117
|||||||||||||||||||| || |||||||||||||||||||||||||| || | |||
Sbjct 103 CCGGAATCAAGAACCCCGATTGATACGTTAACGGAAGATGAGGACGACGACTTGGCTGCG 162
Query 118 GCGGCTACAGCTGGGATCGTGGATCCGACGATTCGTCTAATGTATTTAGCCAACGAAGGT 177
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 163 GCGGCTACAGCTGGGATCGGGGATCCGACGATTCGTTTAATGTATTTAGCCAACGAAGGT 222
Query 178 GATATCGATGGGATCAACAAGATGCTTGATTCGGGAACTAATGTTGATTACCGTGACATC 237
||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 223 GATATCGATGGCATCAATAAGATGCTTGATTCGGGTACTAATGTTGATTACCGTGACATC 282
Query 238 GATGGCCGTACTGCTCTTCACGTCGCCGCTTGTCAGGGACGAACCGATGTCGTTGAGCTG 297
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 283 GATGCCCGTACTGCTCTTCACGTCGCCGCTTGTCAAGGACGAACCGATGTCGTTGAGCTG 342
Query 298 CTGCTTCGCCGTGGTGCTAAGGTTGATACGAAGGACCGATGGGGTAGTACGCCTCTTGCA 357
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 CTGCTTAGCCGTGGTGCTAAGGTTGATACGAAGGACCGATGGGGTAGTACGCCTCTTGCA 402
Query 358 GATGCAGTGTATTACAAAAATCATGATGTGATTAAACTTTTGGAGAAACATGGTGCTAAG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 GATGCAGTGTATTACAAAAATCATGATGTGATTAAACTTTTGGAGAAACATGGTGCTAAG 462
Query 418 CCTACGATTGCTCCTATGCATGTCCTAACTGATAAAGAAGTTCCAGAGTACGAGATTCAT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 CCTACGATTGCTCCTATGCATGTCCTAACTGATAAAGAAGTTCCAGAGTACGAGATTCAT 522
Query 478 CCCACAGAGCTTGATTTTTCTAACTCTGTCAAAATTTCAAAGGGTACCTTTCACAAGGCT 537
|| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 523 CCTACAGAGCTTGATTTTTCCAACTCTGTCAAAATTTCAAAGGGTACCTTTAACAAGGCT 582
Query 538 TCATGGCGTGGAATTGACGTGGCTGTGAAAACCTTTGGAGAGGAAATGTTCACTGATGAA 597
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 583 TCATGGCGTGGAATTGACGTGGCTGTTAAAACCTTTGGAGAGGAAATGTTCACTGATGAA 642
Query 598 GACAAAGTGAATGCGTTTAGGGACGAACTTGCACTGCTTCAAAAGATACGCCATCCAAAT 657
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 643 GACAAAGTGAATGCATTTAGGGACGAACTTGCACTGCTTCAAAAGATACGCCATCCGAAT 702
Query 658 GTTGTCCAGTTTCT-GGGAGCAGTTACTCAGAGTACCCCCATGATGATTGTCACAGAGTA 716
||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 703 GTTGTTCAGTTTCTAGGG-GCAGTTACTCAGAGTACCCCCATGATGATTGTCACCGAGTA 761
Query 717 TTTACCCAAGGGGGATCTTCGACAATATCTAGACAGGAAAGGACCTCTAATGCCAGCGCA 776
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 762 TTTACCAAAGGGAGATCTTCGACAATATCTAGACAGGAAAGGACCTCTAATGCCAGCACA 821
Query 777 TGCAGTGAAATTCGCCCTTGAAATTGCTAGGTTAAGTGGCTATTTTCTGGGAATGAATTA 836
|||||||| ||||||||||||||||||||| | | | | |||||||
Sbjct 822 CGCAGTGAAGTTCGCCCTTGAAATTGCTAGG----G-G---A---------A-TGAATTA 863
Query 837 TTTGCACGAGCATAAACCTGAAGCAATAATCCATTGCGACCTAGAACCTCCAAACATACT 896
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 TTTGCACGAACATAAACCTGAAGCAATAATCCATTGCGACCTAGAACCTCCAAACATACT 923
Query 897 GAGGGATGATTCGGGACATCTGAAAGTTGCAGACTTTGGAGTCAGCAAGCTACTGGTAGT 956
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 924 GCGGGATGATTCGGGACATCTGAAAGTTGCAGACTTTGGAGTCAGCAAGCTGCTGGTAGT 983
Query 957 TAAGAAGACAGTTAAAAAAGACAGACCTGTT---ACAT-CATTGGACAGTTCTTGGCGGT 1012
||||||||||||||||||||||||||||||| |||| | ||||||||||| ||||| |
Sbjct 984 TAAGAAGACAGTTAAAAAAGACAGACCTGTTGTTACATGC-TTGGACAGTTCATGGCGAT 1042
Query 1013 ACATGGCTCCAGAAGTTTACAGAAACGAAGAGTATGATACAAAAGTAGATGTATTTTCTT 1072
| ||||||||||| ||||| || || ||||||||||||||||||||||||||||| ||||
Sbjct 1043 ATATGGCTCCAGAGGTTTATAGGAATGAAGAGTATGATACAAAAGTAGATGTATTCTCTT 1102
Query 1073 TCGCTTTGATCTTGCAAGAGATGATAGAAGGTTGTGAACCATTTCATGAGATAGAAGAAA 1132
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 TCGCTTTAATCTTACAAGAGATGATAGAAGGTTGTGAACCATTTCATGAGATAGAAGACC 1162
Query 1133 GCGAAGTTCCTAAAGCATATATTAAAGATGAACGTCCACCATTCAATGCACCAACAAAAT 1192
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1163 GCGAAGTTCCTAAAGCATATATTGAAGATGAACGTCCACCATTCAATGCTCCAACAAAAT 1222
Query 1193 CATATCCTTTCGGGTTACGAGAGCTAATCCAGGATTGTTGGGACAAAGAAGCATCAAAAA 1252
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 CATATCCTTTCGGGTTACAAGAGCTAATCCAGGATTGTTGGGACAAAGAAGCATCAAAAA 1282
Query 1253 GACCAACGTTTCGAGAAATCATCTCTACTTTGGAGTTGATAAGTGATCGAATTGCAAGCA 1312
||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1283 GACCAACATTTAGAGTAATCATCTCTACTTTGGAGTTGATAAGTGATCGAATTGCACGCA 1342
Query 1313 AAAGGAGCTGGAAGGTGATGCTAGGAAGATGCATTCCAAGAATCAGATTGTTTACAAAGC 1372
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1343 AAAGGAGCTGGAAGGTGATGCTAGGAAGATGCCTTCCAAGATTCAGATTGTTTACAAAGC 1402
Query 1373 GAGATTATGTGAATCC---TGGTAGTAACCGTTCATCACGCTCATTC 1416
|||||||||||||||| |||||||||||| |||||| ||||||||
Sbjct 1403 GAGATTATGTGAATCCCGGTGGTAGTAACCGCTCATCAGGCTCATTC 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70230562455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5