BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898853
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58940.1 | Symbols: | F-box/RNI-like superfamily protein | ... 1066 0.0
AT3G58930.1 | Symbols: | F-box/RNI-like superfamily protein | ... 401 6e-111
AT3G58950.1 | Symbols: | F-box/RNI-like superfamily protein | ... 171 2e-41
> AT3G58940.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:21780785-21783663 REVERSE LENGTH=2328
Length=2328
Score = 1066 bits (577), Expect = 0.0
Identities = 694/751 (92%), Gaps = 6/751 (1%)
Strand=Plus/Plus
Query 366 GAAGTT-GCAGGTTAGTGGGTTTCGAGGAACAATTAGAGAGAAAGAGATGATAAGGCATT 424
|||||| | ||||||| |||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1364 GAAGTTAG-AGGTTAGAGGGTTTCGTGGAACAATTCGAGAGAAAGAGATGATAAGGCATT 1422
Query 425 TCTTGGAGTATTTCCCGTGTGTGGATGAGATGGAGATAGATGCCGAAGAGGATGATTCTA 484
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1423 TCTTGGAGTATTTCCCGTGTTTGGATGAGATGGAGATAGATGCCGAAGAGAATGATTCTA 1482
Query 485 CAAACTTTGAAGTGCCTAGAATTTTAAAAATTGTTGCCTATAAGCTCCACGACGTGGTCT 544
||||||||||||||||||||||||||||| |||| || |||| ||||||||| |||||||
Sbjct 1483 CAAACTTTGAAGTGCCTAGAATTTTAAAAGTTGTCGCGTATAGGCTCCACGATGTGGTCT 1542
Query 545 CGACAGAGATAGTTGGACATTGGAAGAGTTCGGCACAATCTGGGGGTTGGTCCCAGACCC 604
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1543 CGACAGAGATAGTTGGACATTGGCAGAGTTCGGCACAATCTGGGGGTTGGTCCCAGACCC 1602
Query 605 AGATGGATGAGATGTACTCTGAGTTCGCTCCCCGCAATAAAGAGCGTATCTATGATATGG 664
|||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||
Sbjct 1603 AGATGGATGAGATGTACTATGAGTTGGCTCCCCGCAATAAAGAGCGTATCTACGATATGT 1662
Query 665 TCTTCATGATGCGTAGAGCTTCTTCCCCAGTTCCTCCTCCTCTGCCACAAGAGATGTCTC 724
||||| | |||||||||||||||||| | || |||||||||| |||||||||||||||||
Sbjct 1663 TCTTCTTCATGCGTAGAGCTTCTTCCACGGTACCTCCTCCTCCGCCACAAGAGATGTCTC 1722
Query 725 AGGACTACCTTCAGATGCAACTTGAAGCTGCGGATCTTAAGGAGAGGCTACGGGACAAAG 784
| ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||| | |
Sbjct 1723 AAGACTACCTTCAGATGCAACTTGAAGTTGCGGATCTTAAGGAGAGGCAACGAGACCAGG 1782
Query 785 AAGCTCA-GCTTGCGGATCTTAAGGAGAGGCTACGGGCTATGTTCGATATGATTGTCGAC 843
|||| || |||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1783 AAGC-CAAGCTTGCGGATCTTAAGGAGAGGCTACGGGCTATGTTAGATATGATTGTTGAC 1841
Query 844 CAGAACCCAATGATAGCATCAGCGTTGATGGCTCGAGAGGCAACTGACTCAGAGCGAGCA 903
||||||||||| ||||| |||||||||| |||| ||||||||||| |||||||||||| |
Sbjct 1842 CAGAACCCAATTATAGCCTCAGCGTTGAGGGCTAGAGAGGCAACTAACTCAGAGCGAGAA 1901
Query 904 AAGGCGTCGAGTGGTGAGGAGATGACCGAGAATAAGCGGGACTATGATGCTCTGTTAGAT 963
||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1902 AAGGCGTCGAGTGGTCAGGAGATGACCGAGAAGGAGCGGGACTATGATGCTCTGTTCGAT 1961
Query 964 ATCATTG-CTGAGCAGAACCCAATGCTAGCATCGGCACTAAGGGCTCTGCGTGCAACCGA 1022
||||||| | ||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 1962 ATCATTGTC-GAGCAGAACCCAATGCTAGCATCGGCAGTTAGAGCTCTGCGTGCAACCGA 2020
Query 1023 CACAGAGCGAGCTGAGACATCCAGGGATCAGGAGATGACCGAGCTCGGCCAAGCTACGGC 1082
| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2021 CTCAGAGCGTGCTGAGACATCCAGTAATCAGGAGATGACCGAGCTCGGCCAAGCTACGGC 2080
Query 1083 AGCAGATTTTCTGCCACGAGATGGAGAATAG 1113
| || |||||| |||||||| |||||||||
Sbjct 2081 AACATATTTTCCCCCACGAGAAGGAGAATAG 2111
Score = 67.6 bits (36), Expect = 2e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 328 GATGATGAGGGTGATGTTGTTCTCCAATTTGGCAATGTG 366
|||||||||||||||||||||||||||||| ||||||||
Sbjct 1026 GATGATGAGGGTGATGTTGTTCTCCAATTTTGCAATGTG 1064
> AT3G58930.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:21778210-21780433 REVERSE LENGTH=1808
Length=1808
Score = 401 bits (217), Expect = 6e-111
Identities = 314/359 (87%), Gaps = 13/359 (4%)
Strand=Plus/Plus
Query 10 TTTCTTCCTTCTTTCCCTGTGCTTGAGGAAATAC-ACATGGCTAATATGGAGTGGCGGGA 68
|||||| ||||||||||||||||||||||| ||| | ||||||| |||||||||| |||
Sbjct 744 TTTCTTTCTTCTTTCCCTGTGCTTGAGGAATTACGA-ATGGCTAGTATGGAGTGGAAGGA 802
Query 69 ATCAGATGAAAGTGAAACCATGTCAAGTGCAAGCCTCAGGAAGCTAAGTATCCACGCCAC 128
||| | | |||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 803 ATC-----ACA-CGAAACCGTGTCAAGTGCAAGCCTCAGGAAGCTAAGTATCCTTGGCAC 856
Query 129 CGGT-GTTGAAGAGTTTGAAAATCCAAAGAGTATATCTTTTGATACTCCAAGTCTGCTTT 187
|||| || ||||| | || ||||||||||| || |||||||||||||||||||| ||||
Sbjct 857 CGGTTGT-GAAGACTATGTGAATCCAAAGAGCATTTCTTTTGATACTCCAAGTCTTCTTT 915
Query 188 ACTTGAACTACTCTGATTTAGTTGCGGAGGACTATCCATTAGTTAAAATGGGGAAGTTAT 247
|||| |||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||
Sbjct 916 ACTTAAACTACTCTGATTTAGTTGCCGAGGATTATCCATTAGTTAATATGGGAAAGTTAC 975
Query 248 TTCAGGCTCGAATCAATCTTATAGTAAAAAATGAAGATCAGATCAAGCGGATAAGAGAGC 307
|| ||||||||||||| |||||||||||| |||| ||||||||||||| |||||||||
Sbjct 976 TTGAGGCTCGAATCAACCTTATAGTAAAAGATGA---TCAGATCAAGCGGGTAAGAGAGC 1032
Query 308 CAAATAATGATTTGTTAGAGGATGATGAGGGTGATGTTGTTCTCCAATTTGGCAATGTG 366
|||||||||| |||||| ||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1033 CAAATAATGACTTGTTACAGGATGATGCGGGTAATGTTGTTCTCCAATTTGGCAATGTG 1091
> AT3G58950.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:21784116-21785840 REVERSE LENGTH=1254
Length=1254
Score = 171 bits (92), Expect = 2e-41
Identities = 248/320 (78%), Gaps = 24/320 (8%)
Strand=Plus/Plus
Query 7 GAC-TTTCTTCCTTCTTTCCCTGTGCTTGAGGAAATA-CACATGGCTAAT-ATGGAGTGG 63
||| ||||||||| |||||||||| ||||||||| || | |||| ||| | || ||||||
Sbjct 366 GACGTTTCTTCCTACTTTCCCTGTTCTTGAGGAATTATC-CATGTCTATTAAT-GAGTGG 423
Query 64 CGGGAATCAGATGAAAGTGAAACCATGTCAAGTGCAAGCCTCAGGAAGCTAAGTATCCAC 123
| || || || | ||||||| || |||||||||||||||||||||||||||||
Sbjct 424 CCGG-AT----TGGGA-TGAAACCGTGACAAGTGCAAGCCTCAGGAAGCTAAGTATCTTT 477
Query 124 GCCACCGG-TGTTGAAGAGTTTGAAAATCCAAAGAGTATATCTTTTGATACTCC-AAGTC 181
||| || ||| ||| | ||| |||||||||||| || |||||||||| ||| |||||
Sbjct 478 ACCATTGGCTGT-GAAAACTTTTCAAATCCAAAGAGCATCTCTTTTGATA-TCCCAAGTC 535
Query 182 TGCTTTACTT-GAACTACTCTGATTTAGTTGCGGAGGACTATCCATTAGTTAAAATGGGG 240
|| ||||||| || || | |||| | ||||||||||| |||||| |||||| ||
Sbjct 536 TGGTTTACTTTGAG-TATTATGATATGGTTGCGGAGGATTATCCAAAAGTTAACTTGAC- 593
Query 241 AAGT-TATTTCAGGCTCGAATCAATCTTATAGTAAAAAATGAAGATCAGATCAAGCG-GA 298
||| || || |||||||||||| ||| || || | | ||||||| |||||||| |
Sbjct 594 AAGCGTAGTTGAGGCTCGAATCAGCCTTTTATTAGA---TCAAGATCAAATCAAGCGAGG 650
Query 299 TAAGAGAGCCAAATAATGAT 318
||||| ||||||||| |||
Sbjct 651 -AAGAGCGCCAAATAACGAT 669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5