BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg898853 Length=1113 Score E Sequences producing significant alignments: (Bits) Value AT3G58940.1 | Symbols: | F-box/RNI-like superfamily protein | ... 1066 0.0 AT3G58930.1 | Symbols: | F-box/RNI-like superfamily protein | ... 401 6e-111 AT3G58950.1 | Symbols: | F-box/RNI-like superfamily protein | ... 171 2e-41 > AT3G58940.1 | Symbols: | F-box/RNI-like superfamily protein | chr3:21780785-21783663 REVERSE LENGTH=2328 Length=2328 Score = 1066 bits (577), Expect = 0.0 Identities = 694/751 (92%), Gaps = 6/751 (1%) Strand=Plus/Plus Query 366 GAAGTT-GCAGGTTAGTGGGTTTCGAGGAACAATTAGAGAGAAAGAGATGATAAGGCATT 424 |||||| | ||||||| |||||||| ||||||||| |||||||||||||||||||||||| Sbjct 1364 GAAGTTAG-AGGTTAGAGGGTTTCGTGGAACAATTCGAGAGAAAGAGATGATAAGGCATT 1422 Query 425 TCTTGGAGTATTTCCCGTGTGTGGATGAGATGGAGATAGATGCCGAAGAGGATGATTCTA 484 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 1423 TCTTGGAGTATTTCCCGTGTTTGGATGAGATGGAGATAGATGCCGAAGAGAATGATTCTA 1482 Query 485 CAAACTTTGAAGTGCCTAGAATTTTAAAAATTGTTGCCTATAAGCTCCACGACGTGGTCT 544 ||||||||||||||||||||||||||||| |||| || |||| ||||||||| ||||||| Sbjct 1483 CAAACTTTGAAGTGCCTAGAATTTTAAAAGTTGTCGCGTATAGGCTCCACGATGTGGTCT 1542 Query 545 CGACAGAGATAGTTGGACATTGGAAGAGTTCGGCACAATCTGGGGGTTGGTCCCAGACCC 604 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1543 CGACAGAGATAGTTGGACATTGGCAGAGTTCGGCACAATCTGGGGGTTGGTCCCAGACCC 1602 Query 605 AGATGGATGAGATGTACTCTGAGTTCGCTCCCCGCAATAAAGAGCGTATCTATGATATGG 664 |||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| Sbjct 1603 AGATGGATGAGATGTACTATGAGTTGGCTCCCCGCAATAAAGAGCGTATCTACGATATGT 1662 Query 665 TCTTCATGATGCGTAGAGCTTCTTCCCCAGTTCCTCCTCCTCTGCCACAAGAGATGTCTC 724 ||||| | |||||||||||||||||| | || |||||||||| ||||||||||||||||| Sbjct 1663 TCTTCTTCATGCGTAGAGCTTCTTCCACGGTACCTCCTCCTCCGCCACAAGAGATGTCTC 1722 Query 725 AGGACTACCTTCAGATGCAACTTGAAGCTGCGGATCTTAAGGAGAGGCTACGGGACAAAG 784 | ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||| | | Sbjct 1723 AAGACTACCTTCAGATGCAACTTGAAGTTGCGGATCTTAAGGAGAGGCAACGAGACCAGG 1782 Query 785 AAGCTCA-GCTTGCGGATCTTAAGGAGAGGCTACGGGCTATGTTCGATATGATTGTCGAC 843 |||| || |||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 1783 AAGC-CAAGCTTGCGGATCTTAAGGAGAGGCTACGGGCTATGTTAGATATGATTGTTGAC 1841 Query 844 CAGAACCCAATGATAGCATCAGCGTTGATGGCTCGAGAGGCAACTGACTCAGAGCGAGCA 903 ||||||||||| ||||| |||||||||| |||| ||||||||||| |||||||||||| | Sbjct 1842 CAGAACCCAATTATAGCCTCAGCGTTGAGGGCTAGAGAGGCAACTAACTCAGAGCGAGAA 1901 Query 904 AAGGCGTCGAGTGGTGAGGAGATGACCGAGAATAAGCGGGACTATGATGCTCTGTTAGAT 963 ||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||| Sbjct 1902 AAGGCGTCGAGTGGTCAGGAGATGACCGAGAAGGAGCGGGACTATGATGCTCTGTTCGAT 1961 Query 964 ATCATTG-CTGAGCAGAACCCAATGCTAGCATCGGCACTAAGGGCTCTGCGTGCAACCGA 1022 ||||||| | ||||||||||||||||||||||||||| | || ||||||||||||||||| Sbjct 1962 ATCATTGTC-GAGCAGAACCCAATGCTAGCATCGGCAGTTAGAGCTCTGCGTGCAACCGA 2020 Query 1023 CACAGAGCGAGCTGAGACATCCAGGGATCAGGAGATGACCGAGCTCGGCCAAGCTACGGC 1082 | ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2021 CTCAGAGCGTGCTGAGACATCCAGTAATCAGGAGATGACCGAGCTCGGCCAAGCTACGGC 2080 Query 1083 AGCAGATTTTCTGCCACGAGATGGAGAATAG 1113 | || |||||| |||||||| ||||||||| Sbjct 2081 AACATATTTTCCCCCACGAGAAGGAGAATAG 2111 Score = 67.6 bits (36), Expect = 2e-10 Identities = 38/39 (97%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 328 GATGATGAGGGTGATGTTGTTCTCCAATTTGGCAATGTG 366 |||||||||||||||||||||||||||||| |||||||| Sbjct 1026 GATGATGAGGGTGATGTTGTTCTCCAATTTTGCAATGTG 1064 > AT3G58930.1 | Symbols: | F-box/RNI-like superfamily protein | chr3:21778210-21780433 REVERSE LENGTH=1808 Length=1808 Score = 401 bits (217), Expect = 6e-111 Identities = 314/359 (87%), Gaps = 13/359 (4%) Strand=Plus/Plus Query 10 TTTCTTCCTTCTTTCCCTGTGCTTGAGGAAATAC-ACATGGCTAATATGGAGTGGCGGGA 68 |||||| ||||||||||||||||||||||| ||| | ||||||| |||||||||| ||| Sbjct 744 TTTCTTTCTTCTTTCCCTGTGCTTGAGGAATTACGA-ATGGCTAGTATGGAGTGGAAGGA 802 Query 69 ATCAGATGAAAGTGAAACCATGTCAAGTGCAAGCCTCAGGAAGCTAAGTATCCACGCCAC 128 ||| | | |||||| ||||||||||||||||||||||||||||||||| | ||| Sbjct 803 ATC-----ACA-CGAAACCGTGTCAAGTGCAAGCCTCAGGAAGCTAAGTATCCTTGGCAC 856 Query 129 CGGT-GTTGAAGAGTTTGAAAATCCAAAGAGTATATCTTTTGATACTCCAAGTCTGCTTT 187 |||| || ||||| | || ||||||||||| || |||||||||||||||||||| |||| Sbjct 857 CGGTTGT-GAAGACTATGTGAATCCAAAGAGCATTTCTTTTGATACTCCAAGTCTTCTTT 915 Query 188 ACTTGAACTACTCTGATTTAGTTGCGGAGGACTATCCATTAGTTAAAATGGGGAAGTTAT 247 |||| |||||||||||||||||||| ||||| |||||||||||||| ||||| |||||| Sbjct 916 ACTTAAACTACTCTGATTTAGTTGCCGAGGATTATCCATTAGTTAATATGGGAAAGTTAC 975 Query 248 TTCAGGCTCGAATCAATCTTATAGTAAAAAATGAAGATCAGATCAAGCGGATAAGAGAGC 307 || ||||||||||||| |||||||||||| |||| ||||||||||||| ||||||||| Sbjct 976 TTGAGGCTCGAATCAACCTTATAGTAAAAGATGA---TCAGATCAAGCGGGTAAGAGAGC 1032 Query 308 CAAATAATGATTTGTTAGAGGATGATGAGGGTGATGTTGTTCTCCAATTTGGCAATGTG 366 |||||||||| |||||| ||||||||| |||| |||||||||||||||||||||||||| Sbjct 1033 CAAATAATGACTTGTTACAGGATGATGCGGGTAATGTTGTTCTCCAATTTGGCAATGTG 1091 > AT3G58950.1 | Symbols: | F-box/RNI-like superfamily protein | chr3:21784116-21785840 REVERSE LENGTH=1254 Length=1254 Score = 171 bits (92), Expect = 2e-41 Identities = 248/320 (78%), Gaps = 24/320 (8%) Strand=Plus/Plus Query 7 GAC-TTTCTTCCTTCTTTCCCTGTGCTTGAGGAAATA-CACATGGCTAAT-ATGGAGTGG 63 ||| ||||||||| |||||||||| ||||||||| || | |||| ||| | || |||||| Sbjct 366 GACGTTTCTTCCTACTTTCCCTGTTCTTGAGGAATTATC-CATGTCTATTAAT-GAGTGG 423 Query 64 CGGGAATCAGATGAAAGTGAAACCATGTCAAGTGCAAGCCTCAGGAAGCTAAGTATCCAC 123 | || || || | ||||||| || ||||||||||||||||||||||||||||| Sbjct 424 CCGG-AT----TGGGA-TGAAACCGTGACAAGTGCAAGCCTCAGGAAGCTAAGTATCTTT 477 Query 124 GCCACCGG-TGTTGAAGAGTTTGAAAATCCAAAGAGTATATCTTTTGATACTCC-AAGTC 181 ||| || ||| ||| | ||| |||||||||||| || |||||||||| ||| ||||| Sbjct 478 ACCATTGGCTGT-GAAAACTTTTCAAATCCAAAGAGCATCTCTTTTGATA-TCCCAAGTC 535 Query 182 TGCTTTACTT-GAACTACTCTGATTTAGTTGCGGAGGACTATCCATTAGTTAAAATGGGG 240 || ||||||| || || | |||| | ||||||||||| |||||| |||||| || Sbjct 536 TGGTTTACTTTGAG-TATTATGATATGGTTGCGGAGGATTATCCAAAAGTTAACTTGAC- 593 Query 241 AAGT-TATTTCAGGCTCGAATCAATCTTATAGTAAAAAATGAAGATCAGATCAAGCG-GA 298 ||| || || |||||||||||| ||| || || | | ||||||| |||||||| | Sbjct 594 AAGCGTAGTTGAGGCTCGAATCAGCCTTTTATTAGA---TCAAGATCAAATCAAGCGAGG 650 Query 299 TAAGAGAGCCAAATAATGAT 318 ||||| ||||||||| ||| Sbjct 651 -AAGAGCGCCAAATAACGAT 669 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54567992415 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5