BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898856
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58960.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 1212 0.0
AT3G58920.1 | Symbols: | F-box/RNI-like superfamily protein | ... 126 5e-28
> AT3G58960.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr3:21787146-21788807 REVERSE LENGTH=1428
Length=1428
Score = 1212 bits (656), Expect = 0.0
Identities = 839/926 (91%), Gaps = 17/926 (2%)
Strand=Plus/Plus
Query 1 ATGGATAGGATCAGCAATCTATCGAATGAAATCA-TATGTCACATTGTATCCTTT-CTTT 58
|||||||| ||||||| |||||| ||||| |||| || || |||| |||| |||| ||||
Sbjct 1 ATGGATAGAATCAGCAGTCTATCAAATGATATCATTA-GTAACATCGTAT-CTTTCCTTT 58
Query 59 CGGCAAAGGAGGC-GACTGTCGCATCGGTTCTCTCAAAGAGATGGCAAAATCTCTATACC 117
||||||| || || | ||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 59 CGGCAAAAGACGCTG-CTGTCGCATCGGTTCTCTCAAAGAGGTGGCAAAATATCTATACC 117
Query 118 ATCATACCAAACCTTGAGTTTGATAACACACTTGAGAATCAAGGTAGTTTGAAGGATTTC 177
||| ||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 118 ATCGTACCAAATCTTGAGTTTGATAACACACTTGAGAATCAAGGAAGTTTGACGGATTTC 177
Query 178 TTGAATGGATTGCTGGCTCTTCCGGCCAGTTCCCGCATAAAGAACGTCTCTATAAAATGT 237
|||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| ||
Sbjct 178 TTGAATGGTTTGCTGGCTCTTCCGGCCAGTACCCGCATAAAGAATGTCTCTATAAAACGT 237
Query 238 CGCGGGCGTGATGGACCAAATCGTCATGCTGATCTCAACCGTTTTCTCTGTAATGTGCTG 297
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 238 CGCGGGCGTGATGGACCAAATCGTGATGCTGATCTCAACCGTTTTCTCTGTAATGTGCTG 297
Query 298 AAGCGTGGTGTCTTGAAGCTTAAACTTGATATATGGGTTACCCTCAACGGAGGATATTCA 357
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 298 AAGCGTGGTGTCTTGAAGCTTAAACTTGATATATGGGTTACCCTCGACGGAAGATATTCA 357
Query 358 CTACCTGTTGAAATCTTCACTTGCAAGACTCTTGTTGAGCTTGAACTAGGGTCTATTTTG 417
|||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 358 CTACCTGTTGAAGTCTTCACTTGCAAGACGCTTGTTGAGCTTGAACTTGGGTCTATTTTA 417
Query 418 CAAATTGATCTTGTCCCTGAGAATGCTCTTCTTCCAGCGCTTAAGACTCTCACTATTGAT 477
|||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 418 CAAATTGATCTTGTTCCTGAGAATGCTCTTCTTCCGGCGCTTAAGACTCTCATTATTGAT 477
Query 478 TCAGTTCGATTCTCTGATCAATCTGGTTGTGCGTTCCAAAAGCTTATTTCTTCTTGCCCT 537
|||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 478 GCAGTTCAATTCTCTGATCAATCTGGTTGTGCGTTCCAAAAGCTTCTGTCTTCTTGCCCT 537
Query 538 GTGCTTGTGGAGTTAGGGATTCTTAATGTGGAGTGGGAGCAGTGGGAATGGTCTTGCAGA 597
|||||||| |||||| |||| ||||||||| | |||||||| ||| |||||||| |||||
Sbjct 538 GTGCTTGTAGAGTTAAGGATGCTTAATGTGCAATGGGAGCATTGGCAATGGTCTCGCAGA 597
Query 598 GTGTCTAGTCCGACCCTGGAGAGACTTACTATCAACCACAGATATTACTTTGCTTATATT 657
||||||||||| ||||| |||| ||||||||| |||||||||||| ||||||
Sbjct 598 GTGTCTAGTCCAACCCTAGAGAAACTTACTATGAACCACAGATATCACTTTG-------- 649
Query 658 GGTAATATTTATTATGATATGGAGGGCATTACTTTTGATACTCCGAGTCTTACCAACTTG 717
| ||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 650 G-TAATACTTATTATGATATGGAGGGCATTACTTTTGATACTCCGAGTCTAACCAGCTTA 708
Query 718 AAGTACTATGATTTTGCTCCGCAATCCTATCCGATGGTTAATCTCGACTCCCTTGTCGAA 777
|||||||||||| || ||||| |||| ||||||| ||||||||||||||||||||| |||
Sbjct 709 AAGTACTATGATCTTCCTCCGAAATCATATCCGACGGTTAATCTCGACTCCCTTGTTGAA 768
Query 778 GCTACTGTCGGTCTTAAGTTGCCACTACATCACGCCTGGAC-GAGAGAATATGCACGTCA 836
||||| || ||||| |||||||||||||||||||||||| | || || |||||||||
Sbjct 769 GCTACAATCTCTCTTACGTTGCCACTACATCACGCCTGGACCG-GAAAACATGCACGTCG 827
Query 837 TGGTGATACTATTCCAAGCGTAACTAATCTGATCAAGGGGTTAAGAAATGTTGAGACCTT 896
|||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 828 TGGTGATACTGTTCCAAGCGTAACCAATCTGATCAAAGGGTTAAGAAACGTTGAGACCTT 887
Query 897 GAACTTAACATGTACCGATACTGTGG 922
||||||| || |||| ||||||||||
Sbjct 888 GAACTTATCAAGTACTGATACTGTGG 913
Score = 468 bits (253), Expect = 7e-131
Identities = 336/374 (90%), Gaps = 13/374 (3%)
Strand=Plus/Plus
Query 925 GGTCCCTTGCACTATAATTATCAGTTGGGCGATGAATATGAGTCTGATGAG-------GT 977
|||||||||||||| ||||||||||||||||||| ||||||||||| ||| |
Sbjct 1057 GGTCCCTTGCACTACAATTATCAGTTGGGCGATGGTTATGAGTCTGAGGAGATTTATTCT 1116
Query 978 GAA-CT-ATTATGAGGATGAGTCGGAGTCTGACGATGATGAATCTATTTGTGAGTGCTTG 1035
||| | || ||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 1117 GAAGATGATGATGAGGAGGAATCGGAGTCTGACGATGATGAGCCTATTTGTGAGTGCTTG 1176
Query 1036 TCAGAGTATTCTTTTCTAGAGTCATGTCTTGTGAAGACCGTAGAGATAACCGAGTACAGC 1095
||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1177 TCAGATTATTCTTTCCTAGAGTCATGTCTTGTGAAGACCGTAGAGATAAGCGAGTACAGC 1236
Query 1096 GGAACTAAAAAAGAGTTGGAA-CACATGAAACATTTCCTGGAGAAATTGTCATGTCTTGA 1154
|||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1237 GGAACTAAAATAGAGTT-GAAGCACATGAAACATTTCCTGGAGAAATTGTCATGTCTTGA 1295
Query 1155 GCTTGTCAAAGTTTGTGCTAATGAAACAGACGACGAGGAACA-GATTCAACTCAGAACCA 1213
|||||||||||||| | || |||||| ||| || |||||||| | |||||||||||||||
Sbjct 1296 GCTTGTCAAAGTTTTTTCTCATGAAAGAGATGAAGAGGAACATG-TTCAACTCAGAACCA 1354
Query 1214 ATCTGCTGAATCTTCCTAGATCGTCTAAGTGCAAGATCGAGTTCGAGTTTATTCCTCCTC 1273
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1355 ATCTGCTGAATCTTCCTAGATCGTCTAAGTGCAAGACCCAGTTCGAGTTTATTCCTCCTC 1414
Query 1274 GTAGCTTTCTTTGA 1287
|||||| | |||||
Sbjct 1415 GTAGCTCTGTTTGA 1428
> AT3G58920.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:21776293-21777988 FORWARD LENGTH=1413
Length=1413
Score = 126 bits (68), Expect = 5e-28
Identities = 480/667 (72%), Gaps = 76/667 (11%)
Strand=Plus/Plus
Query 272 TCAACCGTTTTCTCTGTAATGTGCTGAAGCGTGGTGTCTTGAAGCTTAAACTTG--ATAT 329
||||||||| |||||||||||| |||||||||||||||||| | |||||||| | ||||
Sbjct 293 TCAACCGTTGTCTCTGTAATGTCCTGAAGCGTGGTGTCTTGGATCTTAAACTGGAAATAT 352
Query 330 ATGGGTTACCCTCAACGGA-GGATATTCACTACCTGT-TGAAATCTTCACTTGCAAGACT 387
|| || | || || ||||||| ||| ||| | ||| ||||||||||||| ||
Sbjct 353 AT-GG------TGAA--GATGGATATTTACTGCCT-TCTGAGGTCTTCACTTGCAAAACA 402
Query 388 CTTGTTGAGCTTG-AACT-AGGGT-CT--AT-TT---T--G-C--A---AATTGATCTTG 430
||||||| | || |||| | | || || || | | | | |||||| ||
Sbjct 403 ATTGTTGA-CCTGAAACTCA-CTTCCTGCATATTCGCTGAGTCTTATGTTATTGATGTTA 460
Query 431 TCCCTGAGAATGCTCTT-CTTCCAGCGCTTAAGACTCTCACTATTGATTCAGTTCGATTC 489
||||||||||||| || ||||| | |||| || ||||| | | | ||| || | |||
Sbjct 461 TCCCTGAGAATGC-ATTCCTTCCGGGGCTTGAGTCTCTCTTTCTCAAATCAATTTGGTTC 519
Query 490 TCTGATC-AATCTGGTTGTGCGTTCCAAAAGCTTATTTCTTCTTGCCCTGTGCTTGTGGA 548
||||||| | | || ||||| ||||||| |||| ||||| |||| ||||||||| ||
Sbjct 520 TCTGATCTACGC-GGATGTGCTTTCCAAACGCTTCTTTCTGCTTGTCCTGTGCTT-AAGA 577
Query 549 -GTTAGGGATTCT-TAATGTGGAGTGGGAGCAGTGGGAATGGTCTTGCAGAGTGTCTAGT 606
||| | | | | ||||| ||||||| | ||| |||||||| ||| || || |||
Sbjct 578 CATTAACCA-TATATGATGTGCAGTGGGAAAAATGGAAATGGTCTCGCACTGTATCAAGT 636
Query 607 CCGACCCTGGAGAGACTTACTA-TCAAC-CACAGATATTACTTTGCTTATATTGGTAATA 664
| ||||| || || |||| || ||||| ||||| ||| | ||||| || | | |
Sbjct 637 GCAACCCTTGAAAGGCTTATTATTCAACGTACAGA-ATT-C---ACTTAT-TT--T-A-A 686
Query 665 TTTATTATGATATGGAGGGCATTACTTTTGATACTCCGAGTCTTACCAACTTGAAGTACT 724
| |||| | | ||||||||||||||||||||||||||||| |||| ||||||
Sbjct 687 -CGGGTCTGATTTCAAAAGCATTACTTTTGATACTCCGAGTCTTACCTACTTAAAGTAC- 744
Query 725 AT-GATTTTGCTCCGCAATCCTATCC-GATGGTTAATCTCGACTCCCTTGTCGAAGCTAC 782
|| ||||||| |||| | ||||| | || ||||||| || ||| |||||||||| |
Sbjct 745 ATTGATTTTGTTCCGGAGGAGTATCCAGTTG-TTAATCTTGATTCCATTGTCGAAGCCAA 803
Query 783 TG-TCGGTCTTAAGTTGC-CACTAC-A-TCACG----CC-TGGACGAGAGAATATGCACG 833
| || ||||| || | |||| | ||| | || || | || | || || ||
Sbjct 804 -GCTCCATCTTA--TT-CTCACTGGGAATCAAGATTACCCTGTAAGATACC-TAGGC-CG 857
Query 834 TCATGGTGATACTATTCCAAGCG-T--AACTAATCTGATCAAGGGGTTAAGAAATGTTGA 890
| | |||| ||||| ||||| | ||||||| |||||||||||||||||||||||||
Sbjct 858 AGAAGATGATCCTATTACAAGCAATCCAACTAATTTGATCAAGGGGTTAAGAAATGTTGA 917
Query 891 GACCTTG 897
|| ||||
Sbjct 918 GATCTTG 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63302887245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5