BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898862
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59000.1 | Symbols: | F-box/RNI-like superfamily protein | ... 800 0.0
AT5G38390.1 | Symbols: | F-box/RNI-like superfamily protein | ... 278 7e-74
AT5G38393.1 | Symbols: | pseudogene, F-box protein family, sim... 276 3e-73
AT5G38396.1 | Symbols: | F-box/RNI-like superfamily protein | ... 219 4e-56
> AT3G59000.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:21799276-21801743 FORWARD LENGTH=1793
Length=1793
Score = 800 bits (433), Expect = 0.0
Identities = 525/570 (92%), Gaps = 4/570 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGATAACTATCGGCTGTCGCCAAAAGGTTTCGAGAGCAGGACACTAGTTAAGCTG 60
|||||||||| |||||||||||| ||||||||||||| |||| ||||||||||||||||
Sbjct 483 ATGGAAGATAGCTATCGGCTGTCTCCAAAAGGTTTCGCCAGCAAGACACTAGTTAAGCTG 542
Query 61 AAAATAGACTGTGGAATTGATGTTAGTTGGATGGCTGGGAGCATTTTCTTACCAATGCTT 120
|||||| |||||||||||| |||||||| | |||||||||||||||||||||||||||
Sbjct 543 GAAATAGGTTGTGGAATTGATATTAGTTGGGTAGCTGGGAGCATTTTCTTACCAATGCTT 602
Query 121 AAAACTCTAGTTCTTGACTCAGTTTCGTTTTATGTTGATAAGTTTGAGATTCTTCTTCAT 180
|| ||||| ||||||||||| |||| ||||||||||||||||||||||| ||| |||| |
Sbjct 603 AAGACTCTCGTTCTTGACTCTGTTTGGTTTTATGTTGATAAGTTTGAGACTCTACTTCTT 662
Query 181 GCTTTGCCTGCGCTTGATGATTTAGTCCTGGTTGATGTTAACTGGTTAGATTCGAATGTC 240
||||||||||||||||| || ||||||||||||||||| ||||||||||||||| |||||
Sbjct 663 GCTTTGCCTGCGCTTGAGGAATTAGTCCTGGTTGATGTAAACTGGTTAGATTCGGATGTC 722
Query 241 ACCATCTCAAATGCAAGCCTCAAGACCCTAACAATAGACCCCGATGGTCATTTAGGCACT 300
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 723 ACCATCTCAAATGCAAGCCTCAAGACCCTAACAATAGATTCCGACGGTCATTTAGGCACT 782
Query 301 TTTTCATTTGATACACCTAGTCTTGTTTATTTCTTTTACTCTGATTATGCTGCGGAAGAC 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 783 TTTTCATTTGATACACCTAGTCTTGTTTATTTCTGTTACTCTGATTATGCTGCGGAAGAC 842
Query 361 TATCCCGTAGTTAAAATGGAAAACTTACGTGAGGCTCGAATCTTCCTTATGGTTAGTGAT 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 843 TATCCCGTAGTTAAAATGGAAAACTTACGTGAGGCTCGAATCTTCCTTTTGGTTACTGAT 902
Query 421 GAA-GAGATTGAGCGAGTGAGAGTGCCAAATAATGATTTG-TTCGAGGATGATATGGACA 478
|| || || |||||||| ||| | |||| ||||||| | || ||||||| ||||||||
Sbjct 903 -AATGAAATAGAGCGAGTAAGACTACCAATTAATGATG-GATTAGAGGATGCTATGGACA 960
Query 479 ATGTTGTTCTCCGATTTGAACATGTGGGGAAGCTTATGAATGGCATACGAAATGTTGAGT 538
||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 961 ATGTTGTTCTCAGATTTGGACATGTGGGGAAGCTCATGAATGGCATACGAAATGTTGAGT 1020
Query 539 ATCTGGACTTGTCTGCTGATACTCTCGAGG 568
||||||| ||||||||||||||||||||||
Sbjct 1021 ATCTGGAGTTGTCTGCTGATACTCTCGAGG 1050
Score = 204 bits (110), Expect = 1e-51
Identities = 120/125 (96%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 566 AGGAGATGGAGATATATGCTGACGAGGATGGTCCTACAAACCTCGAAGCTCCTGGGATGT 625
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 AGGAGATGGACATATATGCTGACGAGGATGGTCCTACAAACCTCGAAGCTCCTGGGATGT 1428
Query 626 TTGAACAAATTGCGCATCTTTTTACACTCTACGACCAGGTTTATACTTGTGATGTCCAGT 685
||||||||||| |||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct 1429 TTGAACAAATTACGCAACTTTTTACACTCTACGACGAGTTTTATACTTGTGATGTCCAGT 1488
Query 686 TTATG 690
|||||
Sbjct 1489 TTATG 1493
> AT5G38390.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:15366432-15368053 FORWARD LENGTH=1371
Length=1371
Score = 278 bits (150), Expect = 7e-74
Identities = 393/505 (78%), Gaps = 37/505 (7%)
Strand=Plus/Plus
Query 87 TTGGATGGCTGGGAGCATTTTCTTACCAATGCTTAAAACTCTAGTTCTTGACTCAGTTTC 146
|||| ||| |||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 408 TTGGTTGGATGGGAGCATTTTCTTACCAATGCTTAAAACACTCGTTCTTGAATCAGTTTT 467
Query 147 GTTTTATGTTGATAAGTTTGAGATTCTTCTTCATGCTTTGCCTGCGCTTGATGATTTAGT 206
||| | |||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 468 GTTATCTGTTGAGAAGTTTGAGATTCTTCTTCATGCTTTGCCTGCGCTTGAGGAATTAGT 527
Query 207 CCTGGTTGATGT-TAACTGGTTAGATTCGA-ATGT---C-ACC--ATC-T--CAAATGCA 255
| || | || | || |||| ||| || |||| | | || | ||| || |
Sbjct 528 CATGAATAATATATA-CTGGAAAGAG-CGGGATGTTGTCGATTTGATTGTTTCAAGTGAA 585
Query 256 AGCCTCAAGACCCTAACAATAGACCCCGATGGTCATT-TAGGCA--CTTTTTCATTTGAT 312
||||||||||||||||||||| || | || || || || || |||| |||||||||
Sbjct 586 AGCCTCAAGACCCTAACAATAAACTTC-ATCGT--TTGTACACATACTTTGTCATTTGAT 642
Query 313 ACACCTAGTCTTGTTTATTTCTTTTACTCTGATTATG-CTGCGGAAGACTATCCCGTAGT 371
||||||| ||||| ||| | | |||||||| ||||| | | ||| || ||| ||| ||
Sbjct 643 ACACCTATTCTTGCTTACCTATCTTACTCTGGTTATGTC-GTGGACGATTATGCCGAAGC 701
Query 372 TAAAATGGAAAACTTACGTGAGGCTCGAATCTTCCTTATGGTTAGTGATGAAGA-GAT-T 429
||||||||||||||| ||||||||||||| |||| | || ||| ||||| ||| |
Sbjct 702 TAAAATGGAAAACTTGTTTGAGGCTCGAATCAGCCTTCTTGT-AGT--TGAAGGCGATAT 758
Query 430 GAGC-GAGTGAGAGTGCCAA-ATA-A-TGATTTGTTCGAGGATGAT-ATGGACAATGTTG 484
||| |||| |||| || || | | | ||||||||| ||||||||| | | || |||||
Sbjct 759 CAGCCGAGTAAGAGCGCTAATAAACAATGATTTGTTAGAGGATGATGA-GTACGATGTT- 816
Query 485 TTCTCCGATTTGAACATGTGGGGAAGCTTATGAATGGCATACGAAATGTT-GAGTATCTG 543
|||| ||||||| ||||| ||||||| |||||||| || |||||| || | || |||
Sbjct 817 --CTCCAATTTGAAAATGTGTGGAAGCTAATGAATGGTATTCGAAATATTCG-GTGTCTC 873
Query 544 GACTTGTCTGCTGATACTCTCGAGG 568
| |||||| || ||||||| ||||
Sbjct 874 TATTTGTCTCCTAATACTCTTGAGG 898
> AT5G38393.1 | Symbols: | pseudogene, F-box protein family, similar
to F-box protein family | chr5:15368228-15372475 FORWARD
LENGTH=4248
Length=4248
Score = 276 bits (149), Expect = 3e-73
Identities = 389/500 (78%), Gaps = 35/500 (7%)
Strand=Plus/Plus
Query 86 GTTGGATGGCTGGGAGCATTTTCTTACCAATGCTTAAAACTCTAGTTCTTGACTCAGTTT 145
||||| |||||||| | || || |||||||||||||||||| | | ||||| ||||||
Sbjct 1927 GTTGGTTGGCTGGGGGAATATTATTACCAATGCTTAAAACTGTCCTACTTGAGTCAGTTG 1986
Query 146 CGTTTTATGTTGATAAGTTTGAGATTCTTCTTCA-TGCTTTGCCTGCGCTTGATGATTTA 204
||||||||||| | |||| || ||||| | |||||||||| ||||| || |||
Sbjct 1987 GGTTTTATGTTG---A---TGAGGTTTTTCTT-AGAGCTTTGCCTGTTCTTGAGGAATTA 2039
Query 205 GTCCTGGTTGATGTTA-ACTGGT-T--AG-ATT-CGAATGTCACCATCTCAAATGCAAGC 258
||| ||||||||| || ||| | | || || | |||||| | | ||||||||||||
Sbjct 2040 GTCATGGTTGATG-TATTCTGTTCTGGAGCGTTAAGGATGTCATCGTGTCAAATGCAAGC 2098
Query 259 CTCAAGACCCTAACAAT-AGACCCCGATGGTCATT-TA-GGCA-CTTTTTCATTTGATAC 314
||||||||||||||||| || || | |||| || || | || | ||||| |||||
Sbjct 2099 CTCAAGACCCTAACAATGAGTTCCA-AC---CATTATACGGGAACTATGTCATTCGATAC 2154
Query 315 ACCTAGTCTTGTTTATTTCTT-TTACTCTGATTATGCTGCGGAAGACTATCCCGTAGTTA 373
||||||||| ||||| || || ||||||||| |||| ||| ||||||| ||| ||||||
Sbjct 2155 ACCTAGTCTAGTTTACTT-TTGTTACTCTGACTATGTTGCTAAAGACTACCCCTTAGTTA 2213
Query 374 AAATGGAAAACTTACGTGAGGCTCGAATCTTCCTTATGGTTAG-TGATGAAGAGATT-GA 431
| ||||||||||||| ||||||| ||||| ||| || ||| ||| || | | | ||
Sbjct 2214 ACATGGAAAACTTACTTGAGGCTAGAATCAAACTTTTG-TTAACTGACGATCA-AGTCGA 2271
Query 432 GCGAGTGAGAGTGCCAAATAATGATTT-GTTCGAGGATGAT-ATGGACAATGTTGTTCTC 489
||| |||| ||||||||| ||| || |||| |||| | |||| ||||||||||
Sbjct 2272 AAGAGCAAGAGAGCCAAATAACGATGGCGTG-GAGGCTGATGA-GGACGATGTTGTTCTA 2329
Query 490 CGATTTG-AACATGTGGGGAAGCTTATGAATGGCATACGAAATGTTGAGTATCTGGACTT 548
| ||||| || ||||||||||||| ||||||||||||||||||||| ||||||| | ||
Sbjct 2330 CAATTTGCAA-ATGTGGGGAAGCTCATGAATGGCATACGAAATGTTCAGTATCTAGTGTT 2388
Query 549 GTCTGCTGATACTCTCGAGG 568
|||||| ||||||||||||
Sbjct 2389 TTCTGCTAATACTCTCGAGG 2408
> AT5G38396.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:15373094-15374726 FORWARD LENGTH=1389
Length=1389
Score = 219 bits (118), Expect = 4e-56
Identities = 381/501 (76%), Gaps = 46/501 (9%)
Strand=Plus/Plus
Query 81 TGTTAGTTGGATGGCT-GGGAGCATTTTCTTACCAATGCTTAAAACTCTAGTTCTTGACT 139
|||| ||||| ||||| ||||| |||||||||||||||||||||||||| | ||||| |
Sbjct 465 TGTTGGTTGGTTGGCTGGGGAG-ATTTTCTTACCAATGCTTAAAACTCTCGAACTTGA-T 522
Query 140 CA-GTTTCGTTTTATGTTGATAAGTTTGAGATTCTTCTTCA-TGCTTTGCCTGCGCTTGA 197
| ||| |||||||| |||| | || | | ||||| | ||||| |||||||| ||
Sbjct 523 TATGTTGGGTTTTATGGTGATTTG-TT--G--T-TTCTT-AGAGCTTTACCTGCGCTAGA 575
Query 198 TGATTTAGTCCTGGTTGATGTTA-ACTGGTT-A-GA---TT-CGAATGTCACCATCTCAA 250
|| |||||| | ||||||| | |||||| | || || || |||||||| | ||||
Sbjct 576 GGAATTAGTCATTGTTGATG-CATTCTGGTTCACGACCTTTACGGATGTCACCGTGTCAA 634
Query 251 ATGCAAGCCTCAAGACCCTAACAAT-AGACCCCGATGGTCATTTAGGCACTTTTTCATTT 309
|| |||||||||||||||||||||| || || || | ||| ||||| | ||||||||
Sbjct 635 ATCCAAGCCTCAAGACCCTAACAATGAGTTCCA-ATATTTATTCAGGCAGTATTTCATTT 693
Query 310 GATACACCTAGTCTTGTTTA-TTTCTTTTACTCTGATTATGCTGCGGAAGACTATCCCGT 368
|||||||||||||||||||| ||| | ||| | | |||| ||| ||||||| ||| |
Sbjct 694 GATACACCTAGTCTTGTTTACTTTAGTC-ACTTTAAGTATGTTGCTAAAGACTACCCCTT 752
Query 369 AGTTAAAATGGAAAACTTACGTGAGGCTCGAATCTTCCTTATGGTTAGTGATGAAGAGAT 428
|||||| ||||||||||||| ||||||| | ||| |||| ||| | ||| | | ||
Sbjct 753 AGTTAACATGGAAAACTTACTTGAGGCTAGGATCAACCTTGGGGTAACTGAGGGTCAAAT 812
Query 429 T-GAGCGAGTGAGAGTGCCAAATAATGATTTGTTCGAGGATGATATGGACAATGTTGTTC 487
|| |||| |||| ||||||||| | | |||| | | |||||||
Sbjct 813 CAGA-CGAGCAAGAGAGCCAAATAA---------C-A--ATGAC--G-AG---GTTGTTC 853
Query 488 TCCGATTTG-AACATGTGGGGAAGCTTATGAATGGCATACGAAATGTTGAGTATCTGGAC 546
|||| ||| || ||||||||||||| ||||||||||||||||||||| ||| ||| |||
Sbjct 854 TCCGGTTTCCAA-ATGTGGGGAAGCTCATGAATGGCATACGAAATGTTCAGTGTCTAGAC 912
Query 547 TTGTCTGCTGATACTCTCGAG 567
|||||||| ||||||| |||
Sbjct 913 TTGTCTGCCAATACTCTTGAG 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38529590749
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5