BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898879
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59150.1 | Symbols: | F-box/RNI-like superfamily protein | ... 1072 0.0
> AT3G59150.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:21872706-21874735 FORWARD LENGTH=1866
Length=1866
Score = 1072 bits (580), Expect = 0.0
Identities = 639/668 (96%), Gaps = 2/668 (0%)
Strand=Plus/Plus
Query 3 GGGTCAACGAAAAAATGtttttttCAAGGCTTTCGTGGATAGGTTACTGTCTCAACGAGT 62
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 326 GGGTCAACGAAAAAATGTTTTTTTCAAGGCTTTCGTCGATAGGTTACTCTCTCAACGAGT 385
Query 63 CGAGACTTCATCACCTGTTCAAAGAGTCTCTTTCAAGTGTCGTCAAGGAGGTGTTGCACC 122
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 386 CGAGACTTCATCACATGTTCAAAGAGTCTCTCTCAAGTGTCGTCAAGGAGGTGTTGAACC 445
Query 123 AGATTGTATAATCAAGTGGATACTAACAACAGTAAGGGATCTTGGTGTCTTAGATCTTTC 182
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 446 AGATTGTGTAATCAAGTGGATACTAACAACAGTAAGGGATCTTGGTGTCTTGGATCTTTC 505
Query 183 TCTATGCATCGATTTTGGAATCTTTCATTTGCCATTTAATGTCTTTAGGAGCAAGACTTT 242
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 TCTATGCATTGATTTTGGAATCTTTCATTTGCCATTTAATGTCTTTAGGAGCAAGACTTT 565
Query 243 GGT-AAACCTTAGAATTGGAACAATGATCCGTCTTGGTCAGTTTCCTAAAGATGCTGTTT 301
||| ||| ||||||||||||||||||||||||||| |||||||||| ||||| |||||
Sbjct 566 GGTCAAA-CTTAGAATTGGAACAATGATCCGTCTTTCTCAGTTTCCTTCAGATGTTGTTT 624
Query 302 CTCCGACGCTTAATTCTCTTGTTCTTGATTTGGTTGAGTTTCGTGATGATGATAAGGTTG 361
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 625 CTCCGACGCTTAATTCTCTTGTTCTTGATTTGGTTGAGTTTCGTGATGGTGATAAGGTTG 684
Query 362 GGTTTAGACAGATTCTATTAGTTTTTCCTTCACTTCAAAGCCTGCGGGTCCATGAATCCA 421
||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| |
Sbjct 685 AGTTTAGACAGATTCTGTTAGCTTTTCCTTCACTTCAAAGCCTGCGGGTTCATGAATCTA 744
Query 422 ACAAGTGGAAGTTTTGGAATGGGTCTGCTTCAACTCGAACGCTCAAGAGTCTTGTATATA 481
|||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||
Sbjct 745 ACAAGTGGAAGTTTTGGAATGGTTCTGCTTCAAGTCGAACGCTTAAGAGTCTTGTATATA 804
Query 482 GAAGTGATGATGATTCCTCTGCTCCTAAACCTTGTGTTTCGTTTGATACTCCGAGTCTTG 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 GAAGTGATGATGATTCCTCTGCTCCTAAACCTTGTGTTTCGTTTGATACTCCGAGTCTTG 864
Query 542 TTTACTTGGACTATTCGGATATGGTTGCGGATAAGTATGAAAATTTGAAATTTGACAGCC 601
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 865 TTTACTTGGACTATTCTGATATGGTTGCGGATAAGTATGAAAATCTGAAATTTGACAGCC 924
Query 602 TTGTTGAAGCTAGGCTTGATCTTCATTTGACTGCTTATCAAATCATGCGCAAACCAAATA 661
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 925 TTGTTGAAGCTAGGCTTGATCTTCATTTGACCGCTTTTCAAATCATGCGCAAACCAAATA 984
Query 662 ACATTGGT 669
| ||||||
Sbjct 985 ATATTGGT 992
Score = 654 bits (354), Expect = 0.0
Identities = 443/484 (92%), Gaps = 13/484 (3%)
Strand=Plus/Plus
Query 704 AGGCGCTCTATTACCGGGGTGACAGGATACCGGTGTTCAACAATTTGATTTCTTTATCTC 763
|||||||||||||||| ||||| | |||||| ||||||||||||||||| |||||||||
Sbjct 1072 AGGCGCTCTATTACCGTGGTGAAAAGATACCAATGTTCAACAATTTGATTACTTTATCTC 1131
Query 764 TGGGAAGCGATAAACCTCATGGTTCACCATTCATCTTCTGGAAATTGCTTCCATCTCTGC 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 TGGGAAGCGATAAACCTCATGGTTCACCATTCATCTTCTGGAAATTGCTTCCATCTCTGC 1191
Query 824 TCAACAACTCTCTCAATA-TTGAAACTCTCATCATCAAGGGTCTAGTGCACTATGTTGCT 882
||||||||||||| || | | ||||||||||||||||||||||||||||| |||||||||
Sbjct 1192 TCAACAACTCTCTTAA-ACTAGAAACTCTCATCATCAAGGGTCTAGTGCATTATGTTGCT 1250
Query 883 GAAGGATGGGAA-G--T---T--T-TGAGTCCTATGAGCCGTCTCTGCTTTTCATGGGAT 933
|||||||||||| | | | | ||| |||||||||||||||||||||||||||||||
Sbjct 1251 GAAGGATGGGAAGGTTTGAGTCCTATGACTCCTATGAGCCGTCTCTGCTTTTCATGGGAT 1310
Query 934 GCTGTGTCTGATTCTCTGTCATCATCTGCAATGAAGGTTTTAGAGATCACTGGGTATAAA 993
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1311 ACTGTGTCTGATTCTCTGTCATCATCTGCGATGAAGGTTTTAGAGATCAGTGGGTATAAA 1370
Query 994 GGAACCTCGCAAGAGCTTAATCAAATGAAGCGTTTCTTGGGGAATCTATCGCGTCTTCAA 1053
||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1371 GGAACTTGGCAAGAGCTGAATCAAATGAAGCGTTTCTTGGGGAATCTATCGCGTCTTGAA 1430
Query 1054 GTGGTTAGGGTTTACCACAAGGCAGTGGATGATAGAG-AAAGAAGTAGCGTCATGAAAGA 1112
||||||||||||||||| |||||| ||||||||| || |||||| || ||||||| ||
Sbjct 1431 GTGGTTAGGGTTTACCATAAGGCAATGGATGATA-AGGAAAGAATTAACGTCATGTTTGA 1489
Query 1113 TCTTTTGCTTCTTCCCAAAGCTTCATCCGAATGCGAGATCCAAGTCATGAAGGAAACTGC 1172
|||||| ||||||||||||| |||||| |||||||| |||||||||||||||||||||||
Sbjct 1490 TCTTTTTCTTCTTCCCAAAGTTTCATCTGAATGCGATATCCAAGTCATGAAGGAAACTGC 1549
Query 1173 TTGA 1176
||||
Sbjct 1550 TTGA 1553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57730626750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5