BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898881
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59200.1 | Symbols: | F-box/RNI-like superfamily protein | ... 1160 0.0
AT3G59170.1 | Symbols: | F-box/RNI-like superfamily protein | ... 305 6e-82
AT3G59160.1 | Symbols: | F-box/RNI-like superfamily protein | ... 267 3e-70
AT2G14090.1 | Symbols: | pseudogene, expressed protein | chr2:... 111 1e-23
AT3G59240.1 | Symbols: | RNI-like superfamily protein | chr3:2... 87.9 2e-16
> AT3G59200.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:21887172-21889344 FORWARD LENGTH=1788
Length=1788
Score = 1160 bits (628), Expect = 0.0
Identities = 817/907 (90%), Gaps = 17/907 (2%)
Strand=Plus/Plus
Query 58 ATCTTGTCATACC-TCACTACAAAAGAAGCTGCTTCAACATCACTTCTCTCGAGAAGATG 116
|||||||| | || || | ||||||||||| ||||| || || | ||||| | || |||
Sbjct 153 ATCTTGTCTTTCCTTC-CCACAAAAGAAGCAGCTTCTACTTCGGTCCTCTCCAAAAAATG 211
Query 117 GCGTTATCTACTTGCTTTTGTTCCAAACCTTGAATTTGATGACTCTGTTTTTCTGCATCG 176
||||||| | |||| | ||| |||| ||||| ||||||||||| | | | |
Sbjct 212 GCGTTATTTGTTTGCGTATGTAACAAATCTTGACTTTGATGACTC-G-------G-A-C- 260
Query 177 GGATAAACGGCATGATAAACCAAAAAGCGATGATGAACTTAGTACAAGTTTTATGGAATT 236
|| | || ||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 261 -TAT-CA-GG-ATGGTAAACCAAAAAGCGATGTTGAACTTAGTAGAAGTTTTATGGAATT 316
Query 237 TGTGGACAGAGTTTTGGCTTTGCAAGGGAATGGTACCATAAACAGATTCTCTCTAGACTG 296
|||||||||||| ||||||||||||||||||||| || |||| | |||||||||||| ||
Sbjct 317 TGTGGACAGAGTCTTGGCTTTGCAAGGGAATGGTTCCGTAAATAAATTCTCTCTAGAGTG 376
Query 297 TTCTAATTATGATGTTGATCTAGCTCGTGTTACTGGTTGGATTTTGAATGTCTTAGGACG 356
| |||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||
Sbjct 377 TAGTAATTATGATGTTGATCTTGCTCGTGTCACTGGTTGGATATTGAATGTGTTAGGACG 436
Query 357 CGGTGTATCAGATCTTGATCTAAGCCTCTTGGAGTATTCCTTGCCTTCCGAGATCTTTGT 416
|||||||||||| |||||| ||||| ||||||||||| |||| ||||| |||||||||||
Sbjct 437 CGGTGTATCAGAGCTTGATTTAAGCATCTTGGAGTATCCCTTACCTTCGGAGATCTTTGT 496
Query 417 GAGTAAGACTCTGGTTAAGCTGAAATTAGGACCGGCAAATGATCTCACTCTCACCATTGA 476
||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 497 GAGTAAGACACTGGTTAGGCTGAAATTAGGACCGGCAAATGATCTTACTCTCACCCTTGA 556
Query 477 TAGGAAAGATGTTTTTCTTCCAAAGCTTAAGACTCTTTATCTTGATACTGTTGAGGTTCA 536
||||||||||||||||||||||||||| |||||||| ||| ||||| |||||| |||||
Sbjct 557 TAGGAAAGATGTTTTTCTTCCAAAGCTCAAGACTCTCTATATTGATTGTGTTGATGTTCA 616
Query 537 AGAGCGTGGTTTTGGTTTTGTAAAGCTTCTCTCTGGCTGTCCCGTGCTCGAGGAGTTAGT 596
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 617 AGAGCGTGGTTTTGGGTTTGTAAAGCTTCTTTCTGGCTGTCCCGTGCTCGAGGAGTTAGT 676
Query 597 TCTGATGAATATCGGGTGGGAAAACTGGAAGTTTTGCTCTGTGTCTGTTAAAACCCTCAA 656
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 677 TCTGATGAATATCGGGTGGGAAAATTGGAAGTTTTGCTCTGTGTCTGTCAAAACCCTGAA 736
Query 657 GAGGCTGACGTTTTTCTGTGAAGACAGTTATGAGAATCCAAAGAGCGTGTCATTTGATAC 716
||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||
Sbjct 737 GAGGCTGACGTTTTTCTGTGAGGAGACTTATGAGAATCCAAAGAGCGTGTCATTTGATAC 796
Query 717 TCCAAACCTTGTTTACCTAGAATATTCTGATGCTATTGCGGGCAAGTATCCAAAAGTGAA 776
||||||||||||||||||||| |||||||| ||||||||| |||||||||| ||||||||
Sbjct 797 TCCAAACCTTGTTTACCTAGAGTATTCTGACGCTATTGCGAGCAAGTATCCGAAAGTGAA 856
Query 777 CTTTAATTCGCTCGTTGAAGCTCATATTGGTCTTCGACTGACAGAAGATCAGAGTGGAGA 836
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 857 CTTTAATTCGCTCGTTGAAGCTCATATCGGTCTTCGACTGACAGAAGATCAGAGTGGAGA 916
Query 837 TGCAGACTTTTCAGAAGAAGACTATTTCTCAGAAGATGATGAGCAAAACCAGATGGTCGG 896
||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||
Sbjct 917 TGCAGACTTTTCAGAAGAAGACTATTTCTCAGAAGGTGATGAGAAAAAACAGATGGTCGG 976
Query 897 TAATGCAACAGATTTTCTTAAGGGAATAAGCACTGTTCAAATCCTTTACCTATCTGCCGA 956
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 977 TAATGCAACGGATTTTCTTAAGGGAATAAGCACTGTTCAGATCCTTTACCTATCTGCCCA 1036
Query 957 AGCTATT 963
|||||||
Sbjct 1037 AGCTATT 1043
Score = 771 bits (417), Expect = 0.0
Identities = 455/474 (96%), Gaps = 0/474 (0%)
Strand=Plus/Plus
Query 964 AAGCGTCTTGTCCACAAGTATAACAAGGCATGTGGGAACGTGTGCTGTTGTAAGCGTCCG 1023
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AAGCGTCTTCTCCACAAGTATAACAAGGCATGTGGGAACGTGTGCTGTTGTAAGCGTCCG 1244
Query 1024 AAGCAGCCTTCTTGCCTTTCATCTTCTCCGGTGAAGGTTCTAAAGATATTTCTGTTTGAT 1083
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1245 AAGCAGCCTTCTTGCCTTTCATCTTCTCCGGTGAAGGTTCTTAAGATATTTCTGTTTGAT 1304
Query 1084 GACAACGATGAAGAAGACGGGTCAGAAATGCGGCAGATCAAGAATTTCTTGGAGAAAATG 1143
||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||
Sbjct 1305 GACAACGATGAAGAAGACGGGTCGGAAATGAGGCAGATCAAGTATTTCTTGGAGAAAATG 1364
Query 1144 CCGCGTCTTGAAGAGTTGATAGTATACTACAATACATCATATGACCCTGCTGTGTTAGAA 1203
|| ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1365 CCCCGTCTAGAAGAGTTGGTAGTATACTACAATACAGCATATGACCCTGCTGTGTTAGAA 1424
Query 1204 TTATCCAAGAAGCTTCAGAAGATTCCTAAGATAGCTTCACCAAAGTGCAAGATTCAGGTA 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1425 TTATCCAAGAAGCTTCAGAAGATTCCTAAGATAGCTTCACCAAAGTGCAAGATCCAGGTA 1484
Query 1264 ATCTCTGAGAATCTTAGTTTGTCATCTACTGTTCCTTCTTTCTTAACAACGAGATGGTCT 1323
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 1485 ATCTCTGAGAATCTTAGTTTGTCATCTACCGTGCCTTCTTTCTTGACAACGAGATGGTCT 1544
Query 1324 TCTCTTCCTACTGAAGAAGAATATCCCTGGGTTGAGTCTCCTCCTCCCCAAATAATAGAT 1383
||||||||| ||||||||| |||||| |||||||| ||||||||||||||||||||||||
Sbjct 1545 TCTCTTCCTCCTGAAGAAGCATATCCATGGGTTGACTCTCCTCCTCCCCAAATAATAGAT 1604
Query 1384 CCCATGTTACAGTATGGTTCTCCTCCAGAAGATGAAGATTCCTGGTTGTACTAG 1437
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1605 CCCATGTTAGAGTATGGTTCTCCTCCAGAAGATGATGATTCCTGGTTGTACTAG 1658
> AT3G59170.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:21878167-21879799 FORWARD LENGTH=1422
Length=1422
Score = 305 bits (165), Expect = 6e-82
Identities = 177/183 (97%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 1 ATGGATTCTGTTTCTAAAGATATGATCAACGTTTTGCCGGACGCACTTCTTTGTCATATC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGATTCTGTTTCTAAAGATATGATCAACGTTTTGCCGGACGCACTTCTTTGTCACATC 60
Query 61 TTGTCATACCTCACTACAAAAGAAGCTGCTTCAACATCACTTCTCTCGAGAAGATGGCGT 120
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TTGTCATTCCTCACTACAAAAGAAGCTGCTTCAACCTCACTTCTCTCGAGAAGATGGCGT 120
Query 121 TATCTACTTGCTTTTGTTCCAAACCTTGAATTTGATGACTCTGTTTTTCTGCATCGGGAT 180
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 121 TATCTACTTGCTTTTGTTCCAAACCTTGAATTTGATGACTCTGTCTATCTGCATCGCGAT 180
Query 181 AAA 183
|||
Sbjct 181 AAA 183
> AT3G59160.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:21875023-21876641 FORWARD LENGTH=1395
Length=1395
Score = 267 bits (144), Expect = 3e-70
Identities = 170/183 (93%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 1 ATGGATTCTGTTTCTAAAGATATGATCAACGTTTTGCCGGACGCACTTCTTTGTCATATC 60
|||||||||| |||||||||||||||||||| |||||| |||||||||||||| || |
Sbjct 19 ATGGATTCTGGTTCTAAAGATATGATCAACGATTTGCCAGACGCACTTCTTTGCCACGTT 78
Query 61 TTGTCATACCTCACTACAAAAGAAGCTGCTTCAACATCACTTCTCTCGAGAAGATGGCGT 120
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 79 TTGTCATACCTCACTACAAAAGAAGCTGCTTCAACATCTCTTCTCTCGAGACGATGGCGT 138
Query 121 TATCTACTTGCTTTTGTTCCAAACCTTGAATTTGATGACTCTGTTTTTCTGCATCGGGAT 180
||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 139 TATCTACTTGCTTTTGTTCCAAACCTTGAATTTGATGACTCTGCCTATCTGCATCGCGAT 198
Query 181 AAA 183
|||
Sbjct 199 AAA 201
> AT2G14090.1 | Symbols: | pseudogene, expressed protein | chr2:5930000-5931585
REVERSE LENGTH=1586
Length=1586
Score = 111 bits (60), Expect = 1e-23
Identities = 255/344 (74%), Gaps = 34/344 (10%)
Strand=Plus/Plus
Query 470 CCATTGATAG-GAAAGATGTTTTTCTTCCAAAGCTTAAGACTCTTTATCTTGATACTGTT 528
|||||||| | | |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 424 CCATTGAT-GTGGAAGATGTTTTTCTTCCAAAGCTTAAGACTCTTTATCTTGATACTATT 482
Query 529 GAGGT-TC--AAGAGCGTGGTT-TTGGTTTTGTA-AAGCTTCTCTCTGGCTGTCCCGTGC 583
|| | | || ||| |||| || ||| | | ||| |||| ||||| |||| || |
Sbjct 483 -AG-TATAGGAAAAGC-TGGTGATTACTTT-G-ACAAGATTCTATCTGGTTGTCTTGT-C 536
Query 584 TC-GAGGAGTTAGTTCTGATGAATATCGGGTGGGAAA--ACTGGAAGTTTTGCTCTGTGT 640
| ||||| || |||||||| ||| || | || || | || |||||||||
Sbjct 537 TTAGAGGAATTGGTTCTGAT-AATGTCTACTTTGATTTTAC-G-AACC---GCTCTGTGT 590
Query 641 CTGTT-AAAACCCTCAAGAGGCTGACGTTTT-TCTGTGA-AGAC-AGTTATGAGAATCCA 696
|| | |||||| | ||||| ||| | | | | ||| | |||| | | || |||||||
Sbjct 591 CT-TCCAAAACCTTTAAGAGATTGAAGCTATGT-TGT-ATAGACTA-TGATCAGAATCCG 646
Query 697 AAGAGC-GTGTCATTTGATACTCCAAACCTTGTTTACCTAGAATATTCTGATG-CTATTG 754
| | | || ||||||||||| ||||| || |||||| | ||||| |||||| | |||
Sbjct 647 GATA-CTGTTTCATTTGATACACCAAATCTAGTTTACTTGGAATACTCTGATTACG-TTG 704
Query 755 CGGGCAAGTATCCAAAAGTGAACTTTAATTCGCTCGTTGAAGCT 798
||| |||||| || | |||||| ||| |||||| |||||||||
Sbjct 705 CGGTCAAGTACCCGAGAGTGAAGTTTTGTTCGCTTGTTGAAGCT 748
> AT3G59240.1 | Symbols: | RNI-like superfamily protein | chr3:21898682-21900364
REVERSE LENGTH=1515
Length=1515
Score = 87.9 bits (47), Expect = 2e-16
Identities = 325/452 (72%), Gaps = 48/452 (11%)
Strand=Plus/Plus
Query 410 TCTTTGTGAGTAAGACTCTGGTTAAGCTGA-AATTAGGACCGGCAAATGATCTCACTCTC 468
|||||||||| ||| | || |||||||||| || || || | | |||| | | | | |
Sbjct 404 TCTTTGTGAGCAAGTCACTTGTTAAGCTGAGAA-TACGAACTGAAAAT--TGT-A--C-C 456
Query 469 ACCATTGA-TAGGAAAGATGTTTTTCTTCCAAAGCTTAAGACTCTTTATCTT-GATACTG 526
| |||||| | || ||||||||||||||||||||||||||||||| ||||| | || |
Sbjct 457 ATCATTGATTTGG-AAGATGTTTTTCTTCCAAAGCTTAAGACTCTCGATCTTAG-TAGTA 514
Query 527 TTGAGGTT-CAAGAGCG-TGGTT-TTGGTTTTGTAAAGCTTC-TCTCTGGCTGTCCCGTG 582
|| |||| | ||| || || | ||| || | ||||| | | ||||| |||| ||
Sbjct 515 TTT-GGTTTCGAGA-CGGTGATACTTGCCTTC-TCAAGCT-CATTTCTGGATGTCAAGTC 570
Query 583 CTCGAGGAGTTAGTTCTGA-TGAA-TATCGGGTGGGAAA---ACTGGAAGTTTTGCTCTG 637
|| ||||| ||| | ||| ||| ||| || ||||| | ||||| |||||
Sbjct 571 CTTGAGGATTTAACTATGAGTGATCTAT-GG-TGGGATGGTTATTGGAACC---GCTCTA 625
Query 638 TGTCTGTT-AAAACCCTCAAGAGGCTGACGTTTT-TCTGTGAAGACAGTTATGAGAA-TC 694
||||| | |||||||||||||| || ||| | | ||| |||| | || |||| ||
Sbjct 626 TGTCT-TCCAAAACCCTCAAGAGACTAACGGTACAT-TGTTCAGACTGGGAT-AGAAGTC 682
Query 695 CAAAG-AGCGTGTCATTTGATACTCCAAACCTTGTTTACCTAGAATA-TTCTGATGCTA- 751
| | || | |||||||| || ||||| ||||| ||| | ||||| || |||| ||
Sbjct 683 CGG-GTAGTATTTCATTTGACACGCCAAATCTTGTCTACTTTGAATACTT-TGAT-CTCG 739
Query 752 TTGCGGGCAAGTATCCAAA-AGTGAACTTTA-ATTCGCTCGTTGAAGCTCA-TATTGGTC 808
|||||| ||||||| || |||||| ||| | || || ||||||||| | ||| ||||
Sbjct 740 TTGCGGACAAGTATG-AAGTAGTGAA-TTTCGACTCACTTGTTGAAGCT-AGTATCGGTC 796
Query 809 TTCGACTGACAGAAGATCAGAGTGGAGATGCA 840
||||| ||| | | ||||| ||| | |||||
Sbjct 797 TTCGAATGAGACATCATCAGCGTGCACATGCA 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70832968995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5