BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg898883

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46535.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...   608    1e-173


> AT2G46535.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); 
BEST Arabidopsis thaliana protein match is: Protein of 
unknown function (DUF688) (TAIR:AT3G61840.1); Has 48 Blast 
hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; 
Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:19109620-19110497 FORWARD 
LENGTH=783
Length=783

 Score =  608 bits (329),  Expect = 1e-173
 Identities = 425/466 (91%), Gaps = 27/466 (6%)
 Strand=Plus/Plus

Query  1    ATGAGAGAAGAAAAGGAAGAAGAGAAGGCGAAGCTTGCACTTGTGTTAGCTGCAAAGTCA  60
            ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  79   ATGAGAGGAGACAAGGAAGAAGAGAAGGCGAAGCTTGCACTTGTGTTAGCTGCAAAGTCA  138

Query  61   AGATCATTGTTGTACACTTCATCGCCTGCGAGTCCACGTGTGTTTGCTTCTCCGATTCAC  120
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  139  AGATCGTTGTTGTACACTTCATCGCCTGCGAGTCCACGTGTGTTTGCTTCTCCGATTCAC  198

Query  121  ACTCTTGCCTCTGTTCCGTTTTGTTGGGAAGACCAACCAGGCAAGCCCAAGAACCCTCTT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  199  ACTCTTGCCTCTGTTCCGTTTTGTTGGGAAGACCAACCAGGCAAGCCCAAGCACCCTCTT  258

Query  181  CGTCCTCTTTCTTACCCCAAGTGTCTTGATTTGCCACCTCGTTTGCTCCTTCCTGGTGAG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  259  CGTCCTCTTTCTTACCCCAAGTGTCTTGATTTGCCACCTCGTTTGCTCCTTCCTGGTGAG  318

Query  241  TTTACGCAAATGCCCTTGCCCGAGAGGAAGCATGGGCTCTTGCGGTTCTTGAGGAGGAAA  300
            || |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct  319  TTCACGCAAATGCCCTTGCCCGAGAGGAAACATGGGCTCTTGAGGTTCTTGAGGAGGAAA  378

Query  301  GGGAGAGCCGGA-G--------AGGGG-A-T---GT-TGT-TGTCAG-G-----GAGAGC  338
            |||||||  ||| |        ||||| | |   || | | |||| | |     ||||||
Sbjct  379  GGGAGAGG-GGATGTTGTTGTGAGGGGTAATTATGTCTTTCTGTCGGAGAATCAGAGAGC  437

Query  339  AGGAGAGA-T--CAACGAGAACAACATGAAGATCATGAAGTTTAACAGATCAGGGAGTTT  395
            |||||| | |  ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  438  AGGAGATAATATCAACGAGAACAACATGAAGATCATGAAGTTTAACAGATCAGGGAGTTA  497

Query  396  CCATGGTGGTGGTTCAGTTAAAGGATCTCACTTTTGGGTAAAGTTT  441
            ||||||||||||||| |||||||||||||||||||||| || ||||
Sbjct  498  CCATGGTGGTGGTTCTGTTAAAGGATCTCACTTTTGGGGAA-GTTT  542



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5