BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg898884 Length=1569 Score E Sequences producing significant alignments: (Bits) Value AT3G59230.1 | Symbols: | RNI-like superfamily protein | chr3:2... 760 0.0 AT3G59240.1 | Symbols: | RNI-like superfamily protein | chr3:2... 494 1e-138 AT3G49150.1 | Symbols: | F-box/RNI-like superfamily protein | ... 230 4e-59 AT3G59250.1 | Symbols: | F-box/RNI-like superfamily protein | ... 86.1 1e-15 AT5G35926.1 | Symbols: | Protein with RNI-like/FBD-like domain... 56.5 7e-07 AT5G41840.1 | Symbols: | F-box/RNI-like superfamily protein | ... 52.8 1e-05 > AT3G59230.1 | Symbols: | RNI-like superfamily protein | chr3:21896052-21897787 REVERSE LENGTH=1476 Length=1476 Score = 760 bits (411), Expect = 0.0 Identities = 513/562 (91%), Gaps = 8/562 (1%) Strand=Plus/Plus Query 762 CAAGTCGCTGGTTAAGCTGAGAATAGGA-GCCAGAAATGGTCTCGCCGTTGGAGGTCTCA 820 |||||| ||||||| |||||||||| || || ||||||||||||||| ||||| ||||| Sbjct 432 CAAGTCACTGGTTAGGCTGAGAATA-GAGGCTAGAAATGGTCTCGCCTTTGGAAGTCTCG 490 Query 821 TCA-TGAAAGTGGGAGATGTTTCCCTTCCAAAGCTCAAGACTCTCTGTCTTGATTCGGTT 879 ||| || | ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 491 TCATTG-ACGTGGGAGATGTTTCCCTTCCAAAGCTCAAGACTCTCTATCTTGATTCGGTT 549 Query 880 GTGTTAGATTACCAGATAATTTGTTTGGCTAAGCTTCTTTCAGGTTGTCATGTCCTTGAA 939 | ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 550 GAGTTAGATTACCAGATAATTTGTTTGGCTAAGCTTCTTTCTGGTTGTCATGTGCTTGAG 609 Query 940 CAATTAGCTCTGGTTAATCTTAGT-TGGAATTTTTGGGAGTATTGCTCTGTGTCTATCCC 998 |||||| | || || || | || |||||||||||||||| |||||||| ||||||||| Sbjct 610 GAATTAGTTATGATTGAT-GTGGTGTGGAATTTTTGGGAGTCTTGCTCTGCGTCTATCCC 668 Query 999 AACCCTCAAGAGACTAACGTGTTGTATTGAGGAGGATTGGATCAACCCACCACCGAGTGT 1058 |||||||||||||||||||| || || ||||||| ||||| |||||||||||||||||| Sbjct 669 AACCCTCAAGAGACTAACGTTTTTTACCGAGGAGGGTTGGAACAACCCACCACCGAGTGT 728 Query 1059 CACATTTGATAATCCGGCTCTTGTCTACTTTGAATATACCGATACTGTTGCGTTAAAGTA 1118 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 729 CACATTTGATAATCCGGCTCTTGTCTACTTTGAATATACCGATACTGTTGCATTAAAGTA 788 Query 1119 CGAAAAAGTGAATTTCGATTCGCTCGTTGAAGCTAGGCTCGGTCTTCGAGTGGCATATGA 1178 ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 789 TGAAAAAGTGAATTTCGATTCGCTTGTTGAAGCTAGGCTCGGTCTTCGAGTGGGATATGA 848 Query 1179 AGAGACAGAAAATCCAATAGA-GTTCCCTGATGGCATCCCCTTCCCAGTTATAGAATATG 1237 |||| |||||||||||||| | || |||| |||| ||||||||||| |||||||||||| Sbjct 849 AGAGTCAGAAAATCCAATACAAGT-CCCTTTTGGCTTCCCCTTCCCACTTATAGAATATG 907 Query 1238 TTACGGTCGGTGATGCAACTGATCTACTTATGGGATTACGCAATGTTCAGGTTCTTTACT 1297 || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 908 CTATGGTCGGTGATGCAACTGATCTACTTATGGGAATACGCAATGTTCAGGTTCTTTACT 967 Query 1298 TATATGCGAGCACTCTTGAGGT 1319 |||||||||||||| ||||||| Sbjct 968 TATATGCGAGCACTGTTGAGGT 989 Score = 414 bits (224), Expect = 1e-114 Identities = 244/254 (96%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 1316 AGGTTCTAAAGATATTGAAGTTTGGGGAAGTTAATGACAAGACAGAATTAGAGCAAATCA 1375 |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 1223 AGGTTCTAGAGATATTGAAGTTTGGGGAAATTAATGACAAGACAGAATTAGAGCAAACCA 1282 Query 1376 AGCATTTCTTGGAATCAATGCCGTTTCTTGAACAGCTCAATATATACTACGATACATCAG 1435 |||| |||||||| | ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1283 AGCACTTCTTGGAGTTAATGCCGCATCTTGAACAGCTCAATATATACTACGATACATCAG 1342 Query 1436 TTGACGATAATCTTGTTAAAGTATCCAAGCAACTTCAGGAAATTCCTGGAGTAGCTTCAG 1495 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1343 TTGACGATAACCTTGTTAAAGTATCCAAGCAACTTCAGGAAATTCCTGGAGTAGCTTCAG 1402 Query 1496 CAAAGTGCAAGGTCCAAGTAATCTCCGATAACCTCACCTTCTCAGTTACTTTACCCTCTT 1555 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1403 CAAAGTGCAAGGTCCAAGTAATCTCCGATAACCTCACCTTGTCAGTTACTTTACCCTCTT 1462 Query 1556 CCTCATCGATTTAA 1569 |||||||||||||| Sbjct 1463 CCTCATCGATTTAA 1476 Score = 69.4 bits (37), Expect = 1e-10 Identities = 48/53 (91%), Gaps = 2/53 (4%) Strand=Plus/Plus Query 336 TTGCCTATCATCAAGTCCGGTGAAGGTTCT-GAAGATACTCAAGTTTGGCGAA 387 |||||||||||||||||||||||||||||| || |||| | |||||||| ||| Sbjct 1200 TTGCCTATCATCAAGTCCGGTGAAGGTTCTAGA-GATATTGAAGTTTGGGGAA 1251 > AT3G59240.1 | Symbols: | RNI-like superfamily protein | chr3:21898682-21900364 REVERSE LENGTH=1515 Length=1515 Score = 494 bits (267), Expect = 1e-138 Identities = 326/353 (92%), Gaps = 10/353 (3%) Strand=Plus/Plus Query 259 GGACTCCATCACA-AACATACAATTAAATGTGAGGACGCTGACGGGTGTCTATGCAAATC 317 ||||||||||||| | | ||||| ||||||| ||||| ||||||||||||||||||| || Sbjct 1060 GGACTCCATCACAGATC-TACAAGTAAATGTCAGGACACTGACGGGTGTCTATGCAAGTC 1118 Query 318 TTCAAAGGAAATTTGTAGTTGCCTATCATCAAGTCCGGTGAAGGTTCTGAAGATACTCAA 377 ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1119 TTCAAAGGACATTCGTAGTTGCCTATCATCAAGTCCGGTGAAGGTTCTGAAGATACTCAA 1178 Query 378 GTTTGGCGAAGTTTCTTCTTACTTTGATGACGAGGAAAAGCAGCTGGAGCTAGTCAAGTA 437 ||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 1179 GTTTGGCGAAGTTGCTTCTTACTTTGGTGACGAGGAAAAGCAGCTGGAGTTAGTCAAGTA 1238 Query 438 TTTCCTGGAGACAATGCCGAATCTTGAACAGATGATATTGTGTTACAATACACGAATT-G 496 |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | Sbjct 1239 TTTCCTGGAGACAATGCCGAATCTTGAACAAATGATATTGCACTACAATACACGAATTAG 1298 Query 497 ATGAAGGTGTGAAAAGTCAACTTGAGAGGCTAGTTCCTAGAGTATCTTCATCGAAGTGTA 556 |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct 1299 -TGAAGGTGTGAAAAGTCAACTTGACTGGCTAGTTCCTAGAGTATCTTCATCCAAGTGTA 1357 Query 557 GTGTCCAACTAATCTGTGATAACTTCATCGCACCAACTTATCCTTTCTATGGT 609 ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1358 GTGTCCAACTAATCTGTGATAAC------GCACCAACTTATCCTTTCTATGGT 1404 > AT3G49150.1 | Symbols: | F-box/RNI-like superfamily protein | chr3:18218858-18221918 FORWARD LENGTH=1934 Length=1934 Score = 230 bits (124), Expect = 4e-59 Identities = 226/273 (83%), Gaps = 15/273 (5%) Strand=Plus/Plus Query 258 GGGACTCCATCACAAAC-ATACAATTAAATGTGAGGACGCTGACGGGTGTCTATGCAAAT 316 ||| ||||||||| ||| ||||||||||||||||||| | |||||||||||||||||||| Sbjct 1084 GGG-CTCCATCAC-AACGATACAATTAAATGTGAGGATGTTGACGGGTGTCTATGCAAAT 1141 Query 317 CTTCAAAG-GAAATTTGTAGTTGCCTATCATCAAGTCCGGTGAAGGTTCTGAA-GATACT 374 |||| | | | ||| ||||||||||||||||||||||||| || |||| || |||| | Sbjct 1142 CTTC-ACGTGGCATTCCTAGTTGCCTATCATCAAGTCCGGTGCAGTTTCT-AACGATA-T 1198 Query 375 -CAAGTTTGGCGAAGTTTCTTCTTACTTTGATGACGA-GGAAAAGCAGCTGGAGCTAGTC 432 || ||||| ||| ||| | | ||| ||||||| | ||| |||||| | ||||| ||| Sbjct 1199 GGAAATTTGGTGAAATTTGTGATGACTATGATGAC-ATGGAGAAGCAGATAGAGCTCGTC 1257 Query 433 AAGTATTTCCTGGAGACAATGCCGAATCTTGAACAGATGATATTGTGT-TACAATACACG 491 | ||||||||||||||||||||||||||||||| | |||| ||||| | ||| |||||| Sbjct 1258 ATGTATTTCCTGGAGACAATGCCGAATCTTGAAGAAATGAAATTGT-TCTACGATACACA 1316 Query 492 AATTGATGAAGGTGTGAAAAGTCAA-CTTGAGA 523 |||| |||||| ||||| ||| ||| ||| ||| Sbjct 1317 AATTTATGAAGATGTGATAAG-CAAACTTCAGA 1348 > AT3G59250.1 | Symbols: | F-box/RNI-like superfamily protein | chr3:21901570-21903284 REVERSE LENGTH=1434 Length=1434 Score = 86.1 bits (46), Expect = 1e-15 Identities = 142/187 (76%), Gaps = 11/187 (6%) Strand=Plus/Plus Query 77 CGATGTTTTTCTTCCAAACCTTAAGACTC-C-ATCTTGGTTCTGTT-TGGTTTGGAGAGG 133 |||||||||||| ||||| || ||| ||| | ||||| | | || | ||| ||| | | Sbjct 366 CGATGTTTTTCTCCCAAAGCTAAAGTCTCTCTATCTTCATACAATTAT-GTTGGGAAAAG 424 Query 134 GTG-ATACTGGCCTTC-TCAAGCTTATTTCTGGATGTCATGTCCTTGAGGAATTAACTAT 191 ||| | | | | |||| || |||| |||||| ||||||||||||||||||||| | | Sbjct 425 GTGAAGA-TTG-CTTCGAAAAACTTACTTCTGGTTGTCATGTCCTTGAGGAATTAGTTCT 482 Query 192 GATTCATCTATGGTGGGGTGGTTATTGGAACCGCTCTGTGTCTTCCAAAACCCTTAAGAG 251 || | || | | | | | | |||||||||||||||||||||||||||||| ||||| Sbjct 483 GAATAATGTCTACTCCAAT-G-T-TTGGAACCGCTCTGTGTCTTCCAAAACCCTCAAGAG 539 Query 252 ACTTACG 258 ||| ||| Sbjct 540 ACTAACG 546 > AT5G35926.1 | Symbols: | Protein with RNI-like/FBD-like domains | chr5:14062676-14065706 FORWARD LENGTH=1216 Length=1216 Score = 56.5 bits (30), Expect = 7e-07 Identities = 34/36 (94%), Gaps = 0/36 (0%) Strand=Plus/Plus Query 988 GTGTCTATCCCAACCCTCAAGAGACTAACGTGTTGT 1023 |||||||||||||||||||||||||||| || |||| Sbjct 397 GTGTCTATCCCAACCCTCAAGAGACTAAAGTTTTGT 432 > AT5G41840.1 | Symbols: | F-box/RNI-like superfamily protein | chr5:16754436-16756263 REVERSE LENGTH=1623 Length=1623 Score = 52.8 bits (28), Expect = 1e-05 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 988 GTGTCTATCCCAACCCTCAAGAGACTAA 1015 |||||||||||||||||||||||||||| Sbjct 688 GTGTCTATCCCAACCCTCAAGAGACTAA 715 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77459440935 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5