BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898884
Length=1569
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59230.1 | Symbols: | RNI-like superfamily protein | chr3:2... 760 0.0
AT3G59240.1 | Symbols: | RNI-like superfamily protein | chr3:2... 494 1e-138
AT3G49150.1 | Symbols: | F-box/RNI-like superfamily protein | ... 230 4e-59
AT3G59250.1 | Symbols: | F-box/RNI-like superfamily protein | ... 86.1 1e-15
AT5G35926.1 | Symbols: | Protein with RNI-like/FBD-like domain... 56.5 7e-07
AT5G41840.1 | Symbols: | F-box/RNI-like superfamily protein | ... 52.8 1e-05
> AT3G59230.1 | Symbols: | RNI-like superfamily protein | chr3:21896052-21897787
REVERSE LENGTH=1476
Length=1476
Score = 760 bits (411), Expect = 0.0
Identities = 513/562 (91%), Gaps = 8/562 (1%)
Strand=Plus/Plus
Query 762 CAAGTCGCTGGTTAAGCTGAGAATAGGA-GCCAGAAATGGTCTCGCCGTTGGAGGTCTCA 820
|||||| ||||||| |||||||||| || || ||||||||||||||| ||||| |||||
Sbjct 432 CAAGTCACTGGTTAGGCTGAGAATA-GAGGCTAGAAATGGTCTCGCCTTTGGAAGTCTCG 490
Query 821 TCA-TGAAAGTGGGAGATGTTTCCCTTCCAAAGCTCAAGACTCTCTGTCTTGATTCGGTT 879
||| || | ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 491 TCATTG-ACGTGGGAGATGTTTCCCTTCCAAAGCTCAAGACTCTCTATCTTGATTCGGTT 549
Query 880 GTGTTAGATTACCAGATAATTTGTTTGGCTAAGCTTCTTTCAGGTTGTCATGTCCTTGAA 939
| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 550 GAGTTAGATTACCAGATAATTTGTTTGGCTAAGCTTCTTTCTGGTTGTCATGTGCTTGAG 609
Query 940 CAATTAGCTCTGGTTAATCTTAGT-TGGAATTTTTGGGAGTATTGCTCTGTGTCTATCCC 998
|||||| | || || || | || |||||||||||||||| |||||||| |||||||||
Sbjct 610 GAATTAGTTATGATTGAT-GTGGTGTGGAATTTTTGGGAGTCTTGCTCTGCGTCTATCCC 668
Query 999 AACCCTCAAGAGACTAACGTGTTGTATTGAGGAGGATTGGATCAACCCACCACCGAGTGT 1058
|||||||||||||||||||| || || ||||||| ||||| ||||||||||||||||||
Sbjct 669 AACCCTCAAGAGACTAACGTTTTTTACCGAGGAGGGTTGGAACAACCCACCACCGAGTGT 728
Query 1059 CACATTTGATAATCCGGCTCTTGTCTACTTTGAATATACCGATACTGTTGCGTTAAAGTA 1118
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 729 CACATTTGATAATCCGGCTCTTGTCTACTTTGAATATACCGATACTGTTGCATTAAAGTA 788
Query 1119 CGAAAAAGTGAATTTCGATTCGCTCGTTGAAGCTAGGCTCGGTCTTCGAGTGGCATATGA 1178
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 789 TGAAAAAGTGAATTTCGATTCGCTTGTTGAAGCTAGGCTCGGTCTTCGAGTGGGATATGA 848
Query 1179 AGAGACAGAAAATCCAATAGA-GTTCCCTGATGGCATCCCCTTCCCAGTTATAGAATATG 1237
|||| |||||||||||||| | || |||| |||| ||||||||||| ||||||||||||
Sbjct 849 AGAGTCAGAAAATCCAATACAAGT-CCCTTTTGGCTTCCCCTTCCCACTTATAGAATATG 907
Query 1238 TTACGGTCGGTGATGCAACTGATCTACTTATGGGATTACGCAATGTTCAGGTTCTTTACT 1297
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 908 CTATGGTCGGTGATGCAACTGATCTACTTATGGGAATACGCAATGTTCAGGTTCTTTACT 967
Query 1298 TATATGCGAGCACTCTTGAGGT 1319
|||||||||||||| |||||||
Sbjct 968 TATATGCGAGCACTGTTGAGGT 989
Score = 414 bits (224), Expect = 1e-114
Identities = 244/254 (96%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 1316 AGGTTCTAAAGATATTGAAGTTTGGGGAAGTTAATGACAAGACAGAATTAGAGCAAATCA 1375
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1223 AGGTTCTAGAGATATTGAAGTTTGGGGAAATTAATGACAAGACAGAATTAGAGCAAACCA 1282
Query 1376 AGCATTTCTTGGAATCAATGCCGTTTCTTGAACAGCTCAATATATACTACGATACATCAG 1435
|||| |||||||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1283 AGCACTTCTTGGAGTTAATGCCGCATCTTGAACAGCTCAATATATACTACGATACATCAG 1342
Query 1436 TTGACGATAATCTTGTTAAAGTATCCAAGCAACTTCAGGAAATTCCTGGAGTAGCTTCAG 1495
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1343 TTGACGATAACCTTGTTAAAGTATCCAAGCAACTTCAGGAAATTCCTGGAGTAGCTTCAG 1402
Query 1496 CAAAGTGCAAGGTCCAAGTAATCTCCGATAACCTCACCTTCTCAGTTACTTTACCCTCTT 1555
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1403 CAAAGTGCAAGGTCCAAGTAATCTCCGATAACCTCACCTTGTCAGTTACTTTACCCTCTT 1462
Query 1556 CCTCATCGATTTAA 1569
||||||||||||||
Sbjct 1463 CCTCATCGATTTAA 1476
Score = 69.4 bits (37), Expect = 1e-10
Identities = 48/53 (91%), Gaps = 2/53 (4%)
Strand=Plus/Plus
Query 336 TTGCCTATCATCAAGTCCGGTGAAGGTTCT-GAAGATACTCAAGTTTGGCGAA 387
|||||||||||||||||||||||||||||| || |||| | |||||||| |||
Sbjct 1200 TTGCCTATCATCAAGTCCGGTGAAGGTTCTAGA-GATATTGAAGTTTGGGGAA 1251
> AT3G59240.1 | Symbols: | RNI-like superfamily protein | chr3:21898682-21900364
REVERSE LENGTH=1515
Length=1515
Score = 494 bits (267), Expect = 1e-138
Identities = 326/353 (92%), Gaps = 10/353 (3%)
Strand=Plus/Plus
Query 259 GGACTCCATCACA-AACATACAATTAAATGTGAGGACGCTGACGGGTGTCTATGCAAATC 317
||||||||||||| | | ||||| ||||||| ||||| ||||||||||||||||||| ||
Sbjct 1060 GGACTCCATCACAGATC-TACAAGTAAATGTCAGGACACTGACGGGTGTCTATGCAAGTC 1118
Query 318 TTCAAAGGAAATTTGTAGTTGCCTATCATCAAGTCCGGTGAAGGTTCTGAAGATACTCAA 377
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 TTCAAAGGACATTCGTAGTTGCCTATCATCAAGTCCGGTGAAGGTTCTGAAGATACTCAA 1178
Query 378 GTTTGGCGAAGTTTCTTCTTACTTTGATGACGAGGAAAAGCAGCTGGAGCTAGTCAAGTA 437
||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1179 GTTTGGCGAAGTTGCTTCTTACTTTGGTGACGAGGAAAAGCAGCTGGAGTTAGTCAAGTA 1238
Query 438 TTTCCTGGAGACAATGCCGAATCTTGAACAGATGATATTGTGTTACAATACACGAATT-G 496
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
Sbjct 1239 TTTCCTGGAGACAATGCCGAATCTTGAACAAATGATATTGCACTACAATACACGAATTAG 1298
Query 497 ATGAAGGTGTGAAAAGTCAACTTGAGAGGCTAGTTCCTAGAGTATCTTCATCGAAGTGTA 556
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1299 -TGAAGGTGTGAAAAGTCAACTTGACTGGCTAGTTCCTAGAGTATCTTCATCCAAGTGTA 1357
Query 557 GTGTCCAACTAATCTGTGATAACTTCATCGCACCAACTTATCCTTTCTATGGT 609
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1358 GTGTCCAACTAATCTGTGATAAC------GCACCAACTTATCCTTTCTATGGT 1404
> AT3G49150.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:18218858-18221918 FORWARD LENGTH=1934
Length=1934
Score = 230 bits (124), Expect = 4e-59
Identities = 226/273 (83%), Gaps = 15/273 (5%)
Strand=Plus/Plus
Query 258 GGGACTCCATCACAAAC-ATACAATTAAATGTGAGGACGCTGACGGGTGTCTATGCAAAT 316
||| ||||||||| ||| ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1084 GGG-CTCCATCAC-AACGATACAATTAAATGTGAGGATGTTGACGGGTGTCTATGCAAAT 1141
Query 317 CTTCAAAG-GAAATTTGTAGTTGCCTATCATCAAGTCCGGTGAAGGTTCTGAA-GATACT 374
|||| | | | ||| ||||||||||||||||||||||||| || |||| || |||| |
Sbjct 1142 CTTC-ACGTGGCATTCCTAGTTGCCTATCATCAAGTCCGGTGCAGTTTCT-AACGATA-T 1198
Query 375 -CAAGTTTGGCGAAGTTTCTTCTTACTTTGATGACGA-GGAAAAGCAGCTGGAGCTAGTC 432
|| ||||| ||| ||| | | ||| ||||||| | ||| |||||| | ||||| |||
Sbjct 1199 GGAAATTTGGTGAAATTTGTGATGACTATGATGAC-ATGGAGAAGCAGATAGAGCTCGTC 1257
Query 433 AAGTATTTCCTGGAGACAATGCCGAATCTTGAACAGATGATATTGTGT-TACAATACACG 491
| ||||||||||||||||||||||||||||||| | |||| ||||| | ||| ||||||
Sbjct 1258 ATGTATTTCCTGGAGACAATGCCGAATCTTGAAGAAATGAAATTGT-TCTACGATACACA 1316
Query 492 AATTGATGAAGGTGTGAAAAGTCAA-CTTGAGA 523
|||| |||||| ||||| ||| ||| ||| |||
Sbjct 1317 AATTTATGAAGATGTGATAAG-CAAACTTCAGA 1348
> AT3G59250.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:21901570-21903284 REVERSE LENGTH=1434
Length=1434
Score = 86.1 bits (46), Expect = 1e-15
Identities = 142/187 (76%), Gaps = 11/187 (6%)
Strand=Plus/Plus
Query 77 CGATGTTTTTCTTCCAAACCTTAAGACTC-C-ATCTTGGTTCTGTT-TGGTTTGGAGAGG 133
|||||||||||| ||||| || ||| ||| | ||||| | | || | ||| ||| | |
Sbjct 366 CGATGTTTTTCTCCCAAAGCTAAAGTCTCTCTATCTTCATACAATTAT-GTTGGGAAAAG 424
Query 134 GTG-ATACTGGCCTTC-TCAAGCTTATTTCTGGATGTCATGTCCTTGAGGAATTAACTAT 191
||| | | | | |||| || |||| |||||| ||||||||||||||||||||| | |
Sbjct 425 GTGAAGA-TTG-CTTCGAAAAACTTACTTCTGGTTGTCATGTCCTTGAGGAATTAGTTCT 482
Query 192 GATTCATCTATGGTGGGGTGGTTATTGGAACCGCTCTGTGTCTTCCAAAACCCTTAAGAG 251
|| | || | | | | | | |||||||||||||||||||||||||||||| |||||
Sbjct 483 GAATAATGTCTACTCCAAT-G-T-TTGGAACCGCTCTGTGTCTTCCAAAACCCTCAAGAG 539
Query 252 ACTTACG 258
||| |||
Sbjct 540 ACTAACG 546
> AT5G35926.1 | Symbols: | Protein with RNI-like/FBD-like domains
| chr5:14062676-14065706 FORWARD LENGTH=1216
Length=1216
Score = 56.5 bits (30), Expect = 7e-07
Identities = 34/36 (94%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 988 GTGTCTATCCCAACCCTCAAGAGACTAACGTGTTGT 1023
|||||||||||||||||||||||||||| || ||||
Sbjct 397 GTGTCTATCCCAACCCTCAAGAGACTAAAGTTTTGT 432
> AT5G41840.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:16754436-16756263 REVERSE LENGTH=1623
Length=1623
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 988 GTGTCTATCCCAACCCTCAAGAGACTAA 1015
||||||||||||||||||||||||||||
Sbjct 688 GTGTCTATCCCAACCCTCAAGAGACTAA 715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77459440935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5