BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898887
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59270.1 | Symbols: | FBD-like domain family protein | chr3... 721 0.0
> AT3G59270.1 | Symbols: | FBD-like domain family protein | chr3:21906593-21907872
REVERSE LENGTH=1008
Length=1008
Score = 721 bits (390), Expect = 0.0
Identities = 490/538 (91%), Gaps = 8/538 (1%)
Strand=Plus/Plus
Query 1 ATGAATCTTGAATTTGATGACTCAAAGCGTATGCATCATGGAGTGACAAAACAAGAAAGG 60
|||||||| || ||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGAATCTCGATTTTGATGACTCTAAGCGTATGCATTATGGAGTGACAAAACAAGAAAGG 60
Query 61 GATAAGATTCTTCGACGTTTTATAAAGTGCGTGGATGGTAAATTGGCTTTGCATAAGAAT 120
| |||||| || | |||||| |||||| | ||||||||||||||||||||| |||||||
Sbjct 61 GTTAAGATGCTCCAACGTTTCATAAAGCGTGTGGATGGTAAATTGGCTTTGTGTAAGAAT 120
Query 121 GTTCCTTTGAACAGATTCTCCATCAAGTGTAAAGACGATGTTGGACCAGCTCCTGTCATT 180
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 121 GTTCCTTTGAACAGATTCTCCATCAAGTGTAAAGATGACGTTGGACCTGCTCCTGTCATT 180
Query 181 GGTTGGATAACCAATGTGTTGAAACGTCGTGTATCAGAACTTGCTCTAGACATCTCTTCT 240
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 GGTTGGATAACCAATGTGTTGAAACGTCGTGTATCAGAACTTGCACTAGACATCTCTTCA 240
Query 241 TGTTGGGATTGGCCTATGTCTACAGCTATTGATGGGTGCGGTACAATGGTTCAAGAATTT 300
|||||||||||||||||||||||||| |||||||||||| ||| |||||||| ||||||
Sbjct 241 TGTTGGGATTGGCCTATGTCTACAGCGATTGATGGGTGCAATACTATGGTTCAGGAATTT 300
Query 301 TGGGAATCTTGCTCTGTATCTAGCACAAGCCTCAAAAGACTAACGT-T------GCCGAA 353
||||| ||||| ||||||||||||||||||||||| |||||||||| | || |||
Sbjct 301 TGGGAGTCTTGTTCTGTATCTAGCACAAGCCTCAAGAGACTAACGTATCTTAAAGC-GAA 359
Query 354 TTTTGATTCGCTTGTTGAAGCTCGTCTCGATCTTCAAATGACACATGATCAGATCCATAA 413
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 TTTTGATTCGCTTGTTGAAGCTCGTCTTGATCTTCAAATGACACATGATCAGATCCATAA 419
Query 414 GGCAAAATTTTCTGAGGATGATTTAATCAAGCATGAAGGGATGGTTGGCAATGCAACTGt 473
||| |||||||| | ||||||| |||| ||||||| ||| ||||||| |||||||||||
Sbjct 420 GGCCAAATTTTCAGCGGATGATCCAATCCAGCATGAGGGGTTGGTTGGTAATGCAACTGT 479
Query 474 tttttttATTGGAATTTGTAATGTTAAGTCCCTCTACTTATCTGACAACACTCTTGAG 531
|||||| ||||||||||||||||||| |||||| ||||||||| ||||||||||||||
Sbjct 480 TTTTTTCATTGGAATTTGTAATGTTAGGTCCCTTTACTTATCTTACAACACTCTTGAG 537
Score = 538 bits (291), Expect = 3e-152
Identities = 335/356 (94%), Gaps = 3/356 (1%)
Strand=Plus/Plus
Query 527 TTGAGGGACTTCTCCACAGATATGATATGAAATGTC---GAAGTGACGAGTGCCTGTGCA 583
|||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 653 TTGAAGGACTTCTCCACAGATATGATATGAAATGTCAAAGCAGTGACGAGTGCCTGTGCA 712
Query 584 AACCTTGGGAGGAGGAGGACATTCCCACTTGTCTATCATCAAGTCCTGTGAAGGTATTAA 643
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 713 AACCTTGGGAGGAGGAGAACATTCCCACTTGTCTATCATTAAGTCCTGTGAAGGTCTTAA 772
Query 644 AGATAATGAAGTTTGGAGATATCTATGAAGATGAGGACATGGACAAAATGATGGACCAAG 703
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 773 AGATAATGAAGTTTGGAGATATCGATGAAGATGAGGACATGGACAAAATGATGGATCAAG 832
Query 704 TCGAGTACTTCCTTGAGACAATGCCGAATCTTGAACATCTTATAATACATTACGAAACAT 763
||||||||||||||||||||||||| ||||||||||| || ||||| || ||||||||||
Sbjct 833 TCGAGTACTTCCTTGAGACAATGCCTAATCTTGAACAACTCATAATTCACTACGAAACAT 892
Query 764 CTATTGACGAAGATGTGGAGGAAGTATTAAGCCAATTTCAGATGGTTCCTAGAGAAGGTT 823
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 CAATTGACGAAGATGTGGAGGAAGTATTAAGCCAATTTCAGATGGTTCCTAGAGAAGGTT 952
Query 824 TAACCGAGTGCAGGATTCAAGTAATCTCTGAGAATCTTGACTTGTCATCTAATTAA 879
||||||||||||| ||||||||||||||||| ||||||| |||||| |||| ||||
Sbjct 953 TAACCGAGTGCAGAATTCAAGTAATCTCTGACAATCTTGTCTTGTCCTCTATTTAA 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5