BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898918
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59460.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 171 2e-41
> AT3G59460.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: F-box family protein (TAIR:AT3G60040.1); Has 174 Blast
hits to 172 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 174; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr3:21977513-21978323
FORWARD LENGTH=321
Length=321
Score = 171 bits (92), Expect = 2e-41
Identities = 137/158 (87%), Gaps = 6/158 (4%)
Strand=Plus/Plus
Query 760 AGTTACACAGGCGATGAGACAATGCGTCCCTTCCAAGTGAAGGTGTTGCGTGTTCATGGT 819
|||||||||||||||| ||| |||| ||| |||||||||||| || ||| ||||||||||
Sbjct 163 AGTTACACAGGCGATGTGACCATGCCTCCGTTCCAAGTGAAGATGCTGCATGTTCATGGT 222
Query 820 TATGGAGGAACTGCTAAAGAGTTGAAACACTTGA-AGAAATTTATTGGGGAGTCGGAATG 878
|||||||||| ||| ||||| || ||| ||| | | |||||||||||||||||||||||
Sbjct 223 TATGGAGGAAATGCGGAAGAGGTGGAACGCTT-ACATAAATTTATTGGGGAGTCGGAATG 281
Query 879 CGGTGAAGTGGTGCTAG--TG-G-AGGCTGTGGTGGAT 912
||||||||||||||||| || | | ||||||||||||
Sbjct 282 CGGTGAAGTGGTGCTAGGCTGCGGAAGCTGTGGTGGAT 319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46516820122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5