BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898924
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59680.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 894 0.0
> AT3G59680.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant
structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast
hits to 34 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:22044088-22046040
FORWARD LENGTH=994
Length=994
Score = 894 bits (484), Expect = 0.0
Identities = 569/607 (94%), Gaps = 17/607 (3%)
Strand=Plus/Plus
Query 1 ATGCAAGATTCAAAGGCCTCACCTGCAAGAAAACCTTGGTACCAGAGAGCTATGGCGGTC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATGCAAGATTCAAAGGCCTCACCTGCAAGAAAACCTTGGTACCAGAGAGCTATGGCGGTT 240
Query 61 GCCAGATTCGCAACGAATTGGAGAACAATCCCTAAATCATCAT--C-ACAACAACCAGAG 117
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 241 GCCAGATTCGCAACGAATTGGAGAACAATCCCTAAATCATCATCACAACAACAACCAGAG 300
Query 118 -ATTCTTCGTCCGTCTCGAAACCCTAGCGTCAACAACAAGTCATCGAATCA-AAGCCAAA 175
||| |||||||||||||||||||||||||||||| ||||||||| ||||| || |||||
Sbjct 301 AATT-TTCGTCCGTCTCGAAACCCTAGCGTCAACAGCAAGTCATCCAATCATAA-CCAAA 358
Query 176 TTCATCACCAGCTGAGAAAATGCTCGTCTTTGAAACTAGCTGCGAATTCGTTCACTAGGG 235
|| |||||||||||||||||||||||||| | || ||||||||||||| ||||||||||
Sbjct 359 TTTATCACCAGCTGAGAAAATGCTCGTCTCTCAAGGTAGCTGCGAATTCTTTCACTAGGG 418
Query 236 TTTGTCTCTGCGCTCCTATCGGTCCATACGACGACGTTTTCCGAAATT-ACGTCCCGCCG 294
|||| ||||||||||| || |||||||||||||||||||| || ||| |||||||||||
Sbjct 419 TTTGCCTCTGCGCTCCGATTGGTCCATACGACGACGTTTTTCG-GATTCACGTCCCGCCG 477
Query 295 AGAAGAAGTTCAAGCTATCCTCCGTCGAAGCCTCTTCCTATGGTGACGGAGACGGCGGTG 354
|||||||||||||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 478 AGAAGAAGTTCAAGCTATCCTCCGTCGAAGCCTCTTCCTA---T---GGAGACGGCAGTG 531
Query 355 GCGGTGGCAG-CGGCGAGGATGAGTGTGGATTCAGGGAGGAGGATATTTAGAGGGAAGTC 413
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GCGGTGGC-GACGGCGAGGATGAGTGTGGATTCAGGGAGGAGGATATTTAGAGGGAAGTC 590
Query 414 TTTGAGGGAGAACGCGTTGATGAGGAGATTCGTGGTGGCGGAAGAAGAAGCGATGATGga 473
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 591 GTTGAGGGAAAACGCGTTGATGAGGAGATTCGTGGTGGCGGAAGAAGAAGCGATAATGGA 650
Query 474 gaatagaaagagagatcaaatggagattgtgaggaagagaaatcagatgaggaggaagaa 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GAATAGAAAGAGAGATCAAATGGAGATTGTGAGGAAGAGAAATCAGATGAGGAGGAAGAA 710
Query 534 gaaGCTTGGACCTAGTCCTCTTAGTCGTATGGTTATCGCTGAAGATCATCAAGTTTGTCA 593
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 711 GAAGCTTGGACCTAGTCCTCTTAGTCGTATGGTTATCGCTGAAGATCAAGAAGTTTGTCT 770
Query 594 TCTTTGA 600
|||||||
Sbjct 771 TCTTTGA 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28884634525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5