BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898931
Length=2073
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59780.1 | Symbols: | Rhodanese/Cell cycle control phosphat... 1363 0.0
> AT3G59780.1 | Symbols: | Rhodanese/Cell cycle control phosphatase
superfamily protein | chr3:22086478-22090444 FORWARD LENGTH=2504
Length=2504
Score = 1363 bits (738), Expect = 0.0
Identities = 816/854 (96%), Gaps = 3/854 (0%)
Strand=Plus/Plus
Query 580 TCACTTCCTGATCCTAAAGCTAGCTTTGATGACTTTTCTTCTGGGCTCAAGGAGTCCTTC 639
|||||||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 915 TCACTTCCTGATGCGAAAGCTAGCGTTGATGACTTTTCTTCTGGGGTCAAGGAGTCCTTC 974
Query 640 AGCTCTTCACTTAACCAAGGAGAAAATGCTGTAAAGAACACTTTGGAGTCCTTCTCCTCT 699
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 AGCTCTTCACTTAACCAAGGAGAAAATGCTGTAAAGAACACTTTGGAGTCCTTCTCCTCG 1034
Query 700 TCTGTGACATCTATTACAAAGAATGCTTCTGAAGTTGTAGATGA-TGCATTTAACAGAGC 758
||||||||||| |||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct 1035 TCTGTGACATCCATTACAAAGAATGCTTCTGAAGTTGTAGAT-AGTGCAGTTAACAGAGC 1093
Query 759 GTTTTCTGCGGTCGACCAAACAGGAGATATAGCTGGAGACAAGTTTTCAAGTTTTTCTAC 818
||||||| || | |||||||| |||||| ||||||||||||||||||| |||||||||||
Sbjct 1094 GTTTTCTACGCTAGACCAAACGGGAGATGTAGCTGGAGACAAGTTTTCGAGTTTTTCTAC 1153
Query 819 TGGCTTGAAGGAAGCTTCAAACAGAGCAGCTGTTATTGCCATTGATCTGTTGAGGCAATC 878
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1154 TGGCTTGAAGGAAGCTTCAAACAGAGCAGCTGTTATTGCCATTGATCTGCTGAGGCAATC 1213
Query 879 AGTTAGTATTGCAGAAAGTTCTGTTACAAATGGAGTTTCTTTTGTTGTTTACTCTTATGG 938
||||||| ||| ||| || ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1214 AGTTAGTCTTGGAGAGAGATCTGTAACAAATGGAGTTTCTTTTGTTGTGTACTCTTATGG 1273
Query 939 GTCAGCAAAAGATTTACTTCCTCCAGATGTTAAGAGTGCCCTTAACTCGTCAGAAGATGT 998
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1274 ATCAGCAAAAGAATTACTTCCTCCAGATGTAAAGAGTGCCCTTAACTCGTCAGAAGATGT 1333
Query 999 TGCTCTAAAAGTATTGAGTCCCGTGGGAGCTGTGTTGCAGCAGGTATCTGTTGCCATTGG 1058
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1334 TGCTCTAAAAGTATTGAGTCCCGTGGGAGCTGTATTGCAGCAGGTATCTGTTGCCATTGG 1393
Query 1059 AGGTTTGGAGAGAAATTTCGGTTTGGATCCAGATGACCCAATCATTCACCTTTTTCTATT 1118
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1394 AGGTTTGGAGAGAAATATCGGTTTGGATCCAGATGACCCAATCCTTCACCTTTTTCTCTT 1453
Query 1119 CGTAGGCACCACAGGAACCTTTTGGGTTCTATATCGGGTTTGGACATATGGTGGATATGC 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 CGTAGGCACCACAGGAACCTTTTGGGTTCTATATCGGGTTTGGACATATGGTGGATATGC 1513
Query 1179 TGGAGATTTGTCTCCCAAGTCAACTCTGGACCTTTTAAAATCAAGAGAAAAGTCAGTGCT 1238
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1514 TGGAGATTTGTCTCCCAAGTCAACTCTGGACCTTTTAAAATCAAGAGACAAGTCAGTGCT 1573
Query 1239 CATAGACGTCAGGCCTGAAGCCTTGAGAGAGAAAGATGGAATCCCTGATCTGCGGAGATC 1298
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1574 CATAGATGTCAGGCCTGAAGCCTTGAGAGAGAAAGATGGAATACCTGATCTGCGGAGATC 1633
Query 1299 AGCTCGATTTCGATATTCTAGCGTGACACTGCCTGAGGTTGACGGTGCTGTCAAACGGCT 1358
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1634 AGCTCGATTTCGATATTCTAGCGTGACACTGCCTGAGGTTGACGGTGATGTCAAACGGCT 1693
Query 1359 ACTGAAAGGTGGAAGTGAGGTTGATGATATTTTGACAGCAGTAATCATCAAGAACTTGAA 1418
|||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 1694 ACTGAAAGGTGGAAGTGAAGTAGATGATATCTTGACAGCAGTAATCATCAAGAACTTGAA 1753
Query 1419 AACAGTTCAGAGAC 1432
|| ||||||| |||
Sbjct 1754 AATAGTTCAG-GAC 1766
Score = 562 bits (304), Expect = 5e-159
Identities = 385/423 (91%), Gaps = 9/423 (2%)
Strand=Plus/Plus
Query 1 ATGTTTCCCCTGTGCTCAGCCGCAAGCTGCCATTACCATTCTCAGATTTTATTTCCTAGC 60
||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||| ||
Sbjct 324 ATGTTTCCCCTGTGCTCGGCCACAAGCTGCCGTTACCATTCTCAGATTTTATTTCCTGGC 383
Query 61 AATTGGCGAGGCTGTTCTTCCTTCAGGAGAGAGTTGATTCACAGATACAGTTCTGGTGAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 384 AATTGGCGAGGCTGTTCTTCCTTCAGGAGAGAGTTGATTCACAGATACAGTTCAGGTGAC 443
Query 121 AATGCCTTCTTTGGTATCTCTAATGGAACACGCCTGCAGAAGAGTTTCTTACCTCAAGCC 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 444 AATGCCTTCTTTGGTATCTCTAATGGAACACGCCTGCAGAAGAGTTTCGTACCTCAAGCC 503
Query 181 ACTGGGAGTTTCTTCACCGGTACTATCGAAAAAGTAGAGCAACCAGTATCAACATTCAGA 240
|||||||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||
Sbjct 504 ACTGGGAGTTTCTTGACCGGTACTATCGAAAAAACAGAACAACCAGTATCAACATTCGGA 563
Query 241 AGTTTGTGCCAGAATGAGTTGGACAGAATAGAC-----G-TTTATGACTTGAGTGAAGCT 294
|||||||||||||||||||||||||||||| || | ||||| || |||||||||||
Sbjct 564 AGTTTGTGCCAGAATGAGTTGGACAGAATAAACTACATGGTTTATAACATGAGTGAAGCT 623
Query 295 ATTGTAGCGGGTGATGGGGGACTGGCATATGTAGA---TGGAGAAGATGTTTTCCCTGTT 351
|||||||| |||||| ||||||| |||||||||| |||||||||||| |||||||||
Sbjct 624 TTTGTAGCGAGTGATGAGGGACTGACATATGTAGAAAATGGAGAAGATGTGTTCCCTGTT 683
Query 352 GACGCTGCTGTAGCAGATGTTTCCCCTGTTGACGCTGCTGTAGCAGATGTTTCTCCTGTT 411
|| |||| || |||||||||||| |||||||| |||| |||| |||||||||| || ||
Sbjct 684 GAAGCTGTTGCAGCAGATGTTTCTCCTGTTGAAGCTGTTGTACCAGATGTTTCCCCCATT 743
Query 412 GAA 414
|||
Sbjct 744 GAA 746
Score = 532 bits (288), Expect = 4e-150
Identities = 326/345 (94%), Gaps = 0/345 (0%)
Strand=Plus/Plus
Query 1729 GAGTGGGAGAAAACACTGCAACTCATAGCTGTCGTTGGCCTCGGTCTGACTATATACCAA 1788
||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| |
Sbjct 2040 GAGTGGGAGAAAACACTGCAACTCATAGCTGTCATCGGCCTTAGTCTGACTATATACCTA 2099
Query 1789 CGACTTTCTTCATATGATGACTCTGAAGACTTCAAGGAAGACGTCAGGCTGTTGCTTGCA 1848
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 2100 CGACTTTCTTCATATGATGACTCCGAAGACTTCAAACAAGACGTCAGGCTGTTGCTTGCA 2159
Query 1849 CCTGTGAGACTCGGAGCTCAGGCTTTCTCATGGGCTGCAGGAAAACTCGAAACAAATGGT 1908
||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 2160 CCTGTGAAACTCGGAGCTCAGGCTTTCTCGTGGGCTGCAGGAAAACTAGAAACAAATGGT 2219
Query 1909 GTTGGGCTCCCAACATCACCTTCGTCTTCAGATGTTAGAAGCCGGGTTTTGCAAGCTGCT 1968
||||| |||||||| || ||||| |||||||||||| |||||||||||||||||||||||
Sbjct 2220 GTTGGCCTCCCAACTTCGCCTTCTTCTTCAGATGTTCGAAGCCGGGTTTTGCAAGCTGCT 2279
Query 1969 GCTAAGCATGAATCTAAGCCCTCTGATGAAACATCTGAAAGTCTCCAAGATGCATCATCG 2028
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2280 GCTAAGCATGAATCGAAACCCTCTGATGAAACTTCTGAAAGTCTCCAAGATGCATCATCG 2339
Query 2029 TCACCAGAAGAAGCTTTGAACAACGTTGATGTCTCCGAAGCGTAA 2073
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2340 TCACCAGAAGAAGCTTTGAACAACGTTGATGTCTCCGAAGCGTAA 2384
Score = 294 bits (159), Expect = 2e-78
Identities = 187/200 (94%), Gaps = 3/200 (2%)
Strand=Plus/Plus
Query 1427 AGAGACCATACTTGGTGCAAGGAGGCTTTAGATCATGGGTTA-AGGAAGGTCTTCGTGTG 1485
|||| ||||||||| ||||||| || | ||||||||||| || |||||||||||||||||
Sbjct 1846 AGAGGCCATACTTGATGCAAGGTGGGTATAGATCATGGG-TACAGGAAGGTCTTCGTGTG 1904
Query 1486 AAAGAGCCGAAACCTGAGACAACACTTACCATCCTCAACGAAGAAGCTGAGGCGATTCTT 1545
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1905 AAAGAGCCAAAACCTGAGACAACACTTACCATCCTCAACGAGGAAGCTGAGGCGATTTTT 1964
Query 1546 GAGGACATAAATCCTTCTCCATTGCAACTAGTTGGAGTTGGTGTGGGTTTTTTCGCAGCA 1605
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1965 GAGGACATAAATCCCTCTCCATTGCAACTATTTGGAGTTGGTGTGGGTTTTTTCGCAGCA 2024
Query 1606 TTGTATGCTTTGTCTG-GTG 1624
|||||||||||||||| |||
Sbjct 2025 TTGTATGCTTTGTCTGAGTG 2044
Score = 117 bits (63), Expect = 4e-25
Identities = 69/72 (96%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 580 TCACTTCCTGATCCTAAAGCTAGCTTTGATGACTTTTCTTCTGGGCTCAAGGAGTCCTTC 639
|||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 849 TCACTTCCTGATGCGAAAGCTAGCTTTGATGACTTTTCTTCTGGGCTCAAGCAGTCCTTC 908
Query 640 AGCTCTTCACTT 651
||||||||||||
Sbjct 909 AGCTCTTCACTT 920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102760515615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5