BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898932
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25520.1 | Symbols: ATL5, PGY3, OLI5, RPL5A | ribosomal prot... 525 3e-148
AT5G39740.1 | Symbols: OLI7, RPL5B | ribosomal protein L5 B | c... 501 5e-141
> AT3G25520.1 | Symbols: ATL5, PGY3, OLI5, RPL5A | ribosomal protein
L5 | chr3:9269293-9271390 REVERSE LENGTH=1249
Length=1249
Score = 525 bits (284), Expect = 3e-148
Identities = 592/737 (80%), Gaps = 35/737 (5%)
Strand=Plus/Plus
Query 32 CTTA-TTCGATGAGGTATCAGGTCAAATACAGGAGAAGAAGAGATGGCAAGACTGATTAT 90
|||| ||| | |||||| || || || | |||||||||||||||||| |||||||| ||
Sbjct 95 CTTACTTC-AAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGATGGAAAGACTGACTA- 152
Query 91 C-GTGCCAGAATCCGTCGTCTAATCAATCAAGACAAGAACAAATACAACACTCCAAAGTA 149
| | || || ||||||| | | ||||| |||||||||||||| ||||| ||||| |||||
Sbjct 153 CAGGGCAAGGATCCGTC-T-T-ATCAACCAAGACAAGAACAAGTACAATACTCCTAAGTA 209
Query 150 TCGGTTTGTTGTTAGATTTACAAACAAAGACATAACGGCACAGATTGTATCTGCGAGCAT 209
||| |||||||| | ||||| |||||||||||| |||||||||||||||||| |||||
Sbjct 210 TCGTTTTGTTGTCCGGTTTACCAACAAAGACATAGTGGCACAGATTGTATCTGCAAGCAT 269
Query 210 TGCTGGTGATGTAATTCTCGCTGCTGCTTATGCTCACGAGCTGCCACAATATGGGCTTAA 269
||||||||| | || ||| ||||||| || || || ||||| || ||||| || |
Sbjct 270 TGCTGGTGACATTGTTAAAGCTTCTGCTTACGCACATGAACTGCCTCAGTATGGTCTCAC 329
Query 270 TGTTGGTCTTACAAACTATTCTGCAGCATACTGTACTGGACTTCTCCTGGCTCGACGTGT 329
||||||||||||||||||| ||||||| ||||||||||| ||||| ||||||| |||||
Sbjct 330 TGTTGGTCTTACAAACTATGCTGCAGCTTACTGTACTGGCCTTCTTTTGGCTCGCCGTGT 389
Query 330 CCTGAAA-ATGTTTGAAATGGATGCA-GAGTATGAAGGAAATC-TCGAGGCCTCTGGGGA 386
| ||| ||||| |||||||||| | |||||||| ||||| | | |||||| |||| ||
Sbjct 390 -TTTAAAGATGTTGGAAATGGATG-ACGAGTATGAGGGAAA-CGTTGAGGCCACTGGAGA 446
Query 387 AGA-TTTCTCAGTGGAACCTACTGAAAAC-AGGAGACCGTTCCGTGCTCTTCTTGATGTT 444
||| ||| || || || || |||| | | |||||||| |||||||||||||||||||||
Sbjct 447 AGACTTT-TCCGTTGAGCCAACTG-ATTCAAGGAGACCTTTCCGTGCTCTTCTTGATGTT 504
Query 445 GGACTTATCAGAACAACTACCGGAAACCGTGTCTTTGGTGCTCTGAAGGGTGCACTTG-A 503
||||||||||| || || || ||||||||||| || |||||||| |||||||| ||| |
Sbjct 505 GGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGGGTGCT-TTGGA 563
Query 504 TGGTGGTCTTGATATACCTCATAGCGACAAGAGATTCGCAGGATTCTC-CAAAGAAAACA 562
||||||||||||||| ||||| || ||||||||||| || || ||| | ||| || ||||
Sbjct 564 TGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGGTTC-CACAAGGAGAACA 622
Query 563 AACAGCTCGATTCCGCAACTC-ACACCAAATACATCTATGGTGGTCATGT-TGCAGATTA 620
| || || ||| | | || || ||| || |||||||||||||| ||||| | || | ||
Sbjct 623 AGCAACTTGATGCTGAAA-TCCACAGGAACTACATCTATGGTGGCCATGTCT-CAAACTA 680
Query 621 CATGAAGACTCTAA--ACGAAGACGAGCCCGAGAAATTCCAGACTCATTTCAGTGAGTAT 678
||||||| || | | ||||| ||||| ||||| || || ||||| ||||||| ||
Sbjct 681 CATGAAG-CTGTTGGGA-GAAGATGAGCCAGAGAAGTTACAAACTCACTTCAGTGCTTAC 738
Query 679 GTGAAGAAAGGTA-TTGAAGCAGATGAA-ATGGAGGCA-TTGTACAAGAAGGTTCATGCC 735
| |||||||| | ||||||| || || || |||| | ||||||||||||||||| ||
Sbjct 739 ATCAAGAAAGG-AGTTGAAGCTGA-GAGCATTGAGG-AGTTGTACAAGAAGGTTCACGCA 795
Query 736 GCGATCCGAGCTGACCC 752
|| || || ||||||||
Sbjct 796 GCTATTCGTGCTGACCC 812
> AT5G39740.1 | Symbols: OLI7, RPL5B | ribosomal protein L5 B |
chr5:15903296-15905464 FORWARD LENGTH=1254
Length=1254
Score = 501 bits (271), Expect = 5e-141
Identities = 603/760 (79%), Gaps = 36/760 (5%)
Strand=Plus/Plus
Query 10 GTGAAG-CC-CCAGAATTC-AAGGCCTTA-TTCGATGAGGTATCAGGTCAAATACAGGAG 65
|||||| || ||| || || || | |||| ||| | |||||| || || || | ||||||
Sbjct 79 GTGAAGTCCTCCA-AA-TCGAATG-CTTACTTC-AAGAGGTACCAAGTGAAGTTCAGGAG 134
Query 66 AAGAAGAGATGGCAAGACTGATTATC-GTGCCAGAATCCGTCGTCTAATCAATCAAGACA 124
||| |||||||| ||||||||||| | | || || ||||||| | | |||||||||||||
Sbjct 135 AAGGAGAGATGGGAAGACTGATTA-CAGGGCAAGGATCCGTC-T-T-ATCAATCAAGACA 190
Query 125 AGAACAAATACAACACTCCAAAGTATCGGTTTGTTGTTAGATTTACAAACAAAGACATAA 184
||||||| |||||||| || ||||| || ||||||||| ||||||| |||||||||||
Sbjct 191 AGAACAAGTACAACACCCCTAAGTACCGTTTTGTTGTTCGATTTACCAACAAAGACATTG 250
Query 185 CGGCACAGATTGTATCTGCGAGCATTGCTGGTGATGTAATTCTCGCTGCTGCTTATGCTC 244
|||||||||||||||||| ||||| |||||||| | || ||| | ||||| || |
Sbjct 251 TGGCACAGATTGTATCTGCAAGCATAGCTGGTGACATTGTTAAAGCTTCGGCTTACGCAC 310
Query 245 ACGAGCTGCCACAATATGGGCTTAATGTTGGTCTTACAAACTATTCTGCAGCATACTGTA 304
| ||||| || || ||||| || | |||||||||||| |||||| ||||||| |||||||
Sbjct 311 ATGAGCTTCCTCAGTATGGACTCACTGTTGGTCTTACCAACTATGCTGCAGCTTACTGTA 370
Query 305 CTGGACTTCTCCTGGCTCGACGTGTCCTGAAAATGTTTGAAATGGATGCA-GAGTATGAA 363
|||| ||||| ||||||| ||||| ||||||||| | |||||||||| | ||||| ||
Sbjct 371 CTGGCCTTCTTTTGGCTCGTCGTGTTCTGAAAATGCTGGAAATGGATG-ATGAGTACGAG 429
Query 364 GGAAATC-TCGAGGCCTCTGGGGAAGA-TTTCTCAGTGGAACCTACTGAAAACAGGAGAC 421
||||| | | |||||| |||| || || ||| || |||||||| ||||| ||| ||||
Sbjct 430 GGAAA-CGTAGAGGCCACTGGAGAGGACTTT-TCTGTGGAACCAACTGATTCCAGAAGAC 487
Query 422 CGTTCCGTGCTCTTCTTGATGTTGGACTTATCAGAACAACTACCGGAAACCGTGTCTTTG 481
| |||||||||||||||||||||||||||||||| || || || ||||||||||| ||||
Sbjct 488 CTTTCCGTGCTCTTCTTGATGTTGGACTTATCAGGACTACCACTGGAAACCGTGTGTTTG 547
Query 482 GTGCTCTGAAGGGTGCACTTG-ATGGTGGTCTTGATATACCTCATAGCGACAAGAGATTC 540
|||| || ||||| || ||| | || ||||||||||| ||||| || |||||||||||
Sbjct 548 GTGCACTCAAGGGAGCT-TTGGACGGAGGTCTTGATATCCCTCACAGTGACAAGAGATTT 606
Query 541 GCAGGATTCTC-CAAAGAAAACAAACAGCTCGATTCCGCAACTC-ACACCAAATACATCT 598
|| || ||| | |||||| ||||| || || ||| | | || || ||| || |||||||
Sbjct 607 GCTGGTTTC-CACAAAGAGAACAAGCAACTTGATGCTGAAA-TCCACAGGAACTACATCT 664
Query 599 ATGGTGGTCATGT-TGCAGATTACATGAAGACTCTAAACG-AAGACGAGCCCGAGAAATT 656
| ||||| || || | || | ||||||||| || | | |||| ||||| ||||| ||
Sbjct 665 ACGGTGGCCACGTCT-CAAACTACATGAAG-CTGTTGGGGGAAGATGAGCCGGAGAAGTT 722
Query 657 CCAGACTCATTTCAGTGAGTATGTGAAGAAAGGTA-TTGAAGCAGATGAA-ATGGAGGC- 713
|| ||||| ||||||| || | |||||||| | ||||||| || || || ||||
Sbjct 723 GCAAACTCACTTCAGTGCTTACATTAAGAAAGG-AGTTGAAGCTGA-GAGCATCGAGGAG 780
Query 714 ATTGTACAAGAAGGTTCATGCCGCGATCCGAGCTGA-CCC 752
|| ||||||||||||||| || || |||||||| || |||
Sbjct 781 AT-GTACAAGAAGGTTCACGCAGCTATCCGAGCAGAACCC 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44256283507
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5