BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898951
Length=243
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59930.1 | Symbols: | Encodes a defensin-like (DEFL) family... 350 4e-96
AT5G33355.1 | Symbols: | Defensin-like (DEFL) family protein |... 344 2e-94
> AT3G59930.1 | Symbols: | Encodes a defensin-like (DEFL) family
protein. | chr3:22139551-22140320 REVERSE LENGTH=657
Length=657
Score = 350 bits (189), Expect = 4e-96
Identities = 226/244 (93%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 1 ATGGCAAAAAACATCAACTCCGTTAGTTTCACCGTTCTCTTGCTTGTTCTTTTGATGACT 60
|||||||| ||| ||||||||||||| ||||||||||||||||| ||||||||| || ||
Sbjct 194 ATGGCAAAGAACCTCAACTCCGTTAGCTTCACCGTTCTCTTGCTGGTTCTTTTGGTGGCT 253
Query 61 TCCACCGAAATCGTGAAGAGCGATGCTGCATGCTTCACGTTCTTAGGCGAGTGCGGGCCG 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 TCCACCGAAATCCTGAAGAGCGATGCTGCATGCTTCACGTTCTTAGGCGAGTGCGGGCCG 313
Query 121 GAGCCATTTACAGGTTCAAATGCTGATTGCTTGGCCTGTTGTGTAGCACTTTACA-GTAG 179
||||| |||||||||||||||||||||||||| || ||||||||||| || |||| | ||
Sbjct 314 GAGCCGTTTACAGGTTCAAATGCTGATTGCTTAGCGTGTTGTGTAGCTCTCTACAAG-AG 372
Query 180 TCCACCAGTTTGTGCTGGACGTGTTGAGGGAAACCCGGCTCACTGCCACTGCTACAAATC 239
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 373 TCCACCAGTTTGTGCTGGACGTGTTGAGGGAGTCCCGGCTCACTGCCATTGCTACAAATC 432
Query 240 TTAA 243
|||
Sbjct 433 GTAA 436
> AT5G33355.1 | Symbols: | Defensin-like (DEFL) family protein
| chr5:12599253-12599671 FORWARD LENGTH=309
Length=309
Score = 344 bits (186), Expect = 2e-94
Identities = 225/244 (92%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 1 ATGGCAAAAAACATCAACTCCGTTAGTTTCACCGTTCTCTTGCTTGTTCTTTTGATGACT 60
|||||||| ||| ||||||||||||| |||| |||||||||||| ||||||||| || ||
Sbjct 67 ATGGCAAAGAACCTCAACTCCGTTAGCTTCATCGTTCTCTTGCTGGTTCTTTTGGTGGCT 126
Query 61 TCCACCGAAATCGTGAAGAGCGATGCTGCATGCTTCACGTTCTTAGGCGAGTGCGGGCCG 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TCCACCGAAATCCTGAAGAGCGATGCTGCATGCTTCACGTTCTTAGGCGAGTGCGGGCCG 186
Query 121 GAGCCATTTACAGGTTCAAATGCTGATTGCTTGGCCTGTTGTGTAGCACTTTACA-GTAG 179
||||| |||||||||||||||||||||||||| || ||||||||||| || |||| | ||
Sbjct 187 GAGCCGTTTACAGGTTCAAATGCTGATTGCTTAGCGTGTTGTGTAGCTCTCTACAAG-AG 245
Query 180 TCCACCAGTTTGTGCTGGACGTGTTGAGGGAAACCCGGCTCACTGCCACTGCTACAAATC 239
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 246 TCCACCAGTTTGTGCTGGACGTGTTGAGGGAGTCCCGGCTCACTGCCATTGCTACAAATC 305
Query 240 TTAA 243
|||
Sbjct 306 GTAA 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11008637031
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5