BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg898965

Length=168
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22850.1 | Symbols:  | Eukaryotic aspartyl protease family p...   191    2e-48


> AT5G22850.1 | Symbols:  | Eukaryotic aspartyl protease family 
protein | chr5:7633437-7636567 REVERSE LENGTH=2031
Length=2031

 Score =  191 bits (103),  Expect = 2e-48
 Identities = 130/142 (92%), Gaps = 6/142 (4%)
 Strand=Plus/Plus

Query  24    AGAGTTGGTTCTTAAAGACAAGGTCTTTGTCTATGATCTGGTCGGTCAGAGAATCGGATG  83
             ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  1514  AGATTTGGTTCTTAAAGACAAGATCTTTGTCTATGATCTGGTCGGTCAGAGAATCGGATG  1573

Query  84    GACAAACGCAAACTCCGACTGTTCAATGTCGGTAAATGTCTCAGCGACTAGCAGCAGCAG  143
             |      ||||||| ||||||||| | ||||||||||||||||||||||||||||||| |
Sbjct  1574  G------GCAAACTACGACTGTTCGACGTCGGTAAATGTCTCAGCGACTAGCAGCAGCGG  1627

Query  144   AAGAAGCGAATATGTGAACGCA  165
             ||||||||||||||||||||||
Sbjct  1628  AAGAAGCGAATATGTGAACGCA  1649



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7293695895


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5