BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898988
Length=516
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60270.1 | Symbols: | Cupredoxin superfamily protein | chr3... 464 3e-130
AT3G60280.1 | Symbols: UCC3 | uclacyanin 3 | chr3:22279664-2228... 339 2e-92
> AT3G60270.1 | Symbols: | Cupredoxin superfamily protein | chr3:22278029-22278762
REVERSE LENGTH=564
Length=564
Score = 464 bits (251), Expect = 3e-130
Identities = 345/391 (88%), Gaps = 4/391 (1%)
Strand=Plus/Plus
Query 22 CTCCTCCTCTTCCTAGCGGCAGTCCCTGCCGTCTTTGCCGTGACTTTCAAGGTCGGCGAT 81
||||||||| |||||| ||||||||||||||||||||||||||||||| |||| || |||
Sbjct 31 CTCCTCCTCCTCCTAGTGGCAGTCCCTGCCGTCTTTGCCGTGACTTTCCAGGTGGGAGAT 90
Query 82 AATGCTGGCTGGGCTGGTGGTGTCGATTACACG-GATTGGGTCACTGGAAAGACTTTCAG 140
|||| ||| ||| | ||||||||| |||||| | |||||| | || ||||||||||||
Sbjct 91 AATGATGGTTGGACCATTGGTGTCGAGTACACGAG-TTGGGTTAGTGAAAAGACTTTCAG 149
Query 141 AGTCGGTGACACCCTAGAGTTCAAATATGGTCTTTCACATTCGGTGTCCGTGGTGGATAA 200
|||||||||||| ||||||||||||||||||| ||| || |||||| |||||||| ||||
Sbjct 150 AGTCGGTGACACTCTAGAGTTCAAATATGGTCCTTCGCACTCGGTGGCCGTGGTGAATAA 209
Query 201 AGCCGACTACGATGGCTGTGAAACTAGCAGACCGACGCAGAGCTTTTCAGGCGGAGACAC 260
||||||||| |||||||| ||||||||||||||||||||||| ||||| | |||||||||
Sbjct 210 AGCCGACTATGATGGCTGCGAAACTAGCAGACCGACGCAGAGTTTTTCTGACGGAGACAC 269
Query 261 TAAGATAAATCTTACAAGAGTAGGTGCTATACACTTCCTTTGCCCTAGTCCTGGTCACTG 320
|||||| ||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 270 TAAGATCGATCTTACAAAAGTAGGTGCTATACACTTCCTTTGCCTTACTCCTGGTCACTG 329
Query 321 CCTCGGTGGCATGAAACTCGCCGTTACC-GTACTTGCCGCCGTTTCATCAGCGCCTTCAC 379
| | |||||||||||||||||| || |||||||| |||||||||| || |||| |||
Sbjct 330 CAGCCTTGGCATGAAACTCGCCGT-ACAAGTACTTGCTGCCGTTTCATTAGAGCCTCCAC 388
Query 380 CGTCTCCATCAGGGCCATCGCCGTCTCCATC 410
|||||||||||| |||||||||||||||||
Sbjct 389 CGTCTCCATCAGCTCCATCGCCGTCTCCATC 419
Score = 185 bits (100), Expect = 3e-46
Identities = 138/156 (88%), Gaps = 4/156 (3%)
Strand=Plus/Plus
Query 357 CGCCGT-TTCATCAGCGCCTTCACCGTCTCCATCAGGGCCATCGCCGTCTCCATCGCCGG 415
|||||| | ||||||| || |||||||||||||||| ||||||||||||||||||||||
Sbjct 407 CGCCGTCTCCATCAGCTCCATCACCGTCTCCATCAGCTCCATCGCCGTCTCCATCGCCGG 466
Query 416 GAAACGCAGAAAACGTGAAAAACGCCGAGTCTAAGAGAACCATGATGAGCTATGGAATGA 475
|||||||||||||| ||||||| || | ||||||| | | || ||||||||||||| ||
Sbjct 467 GAAACGCAGAAAACTTGAAAAATGCGGCGTCTAAG-GGA--ATCATGAGCTATGGAAAGA 523
Query 476 TTGGGGTGACGATGGTGTTGATGTACGGTGTGATTA 511
||| |||||||||||||||||||||||||||| |||
Sbjct 524 TTGTGGTGACGATGGTGTTGATGTACGGTGTGCTTA 559
> AT3G60280.1 | Symbols: UCC3 | uclacyanin 3 | chr3:22279664-22280675
REVERSE LENGTH=914
Length=914
Score = 339 bits (183), Expect = 2e-92
Identities = 312/374 (83%), Gaps = 9/374 (2%)
Strand=Plus/Plus
Query 1 ATGGGATTAACC---GCCGGCGCTCTCCTCCTCTTCCTAGCGGCAGTCCCTGCCGTCTTT 57
||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 43 ATGGGATCAACCGTGGCCGCCGCTCTCCTCCTCTTCCTAGCGGCAGTCCCTGCCGTCTTT 102
Query 58 GCCGTGACTTTCAAGGTCGGCGATAATGCTGGCTGGGCTGGTGGTGTCGATTACACGGAT 117
|||| ||||||||||||||||||| | |||||||| | || | | |||||||||| |
Sbjct 103 GCCGCAACTTTCAAGGTCGGCGATATTTCTGGCTGGACCAGTAATCTTGATTACACGGTT 162
Query 118 TGGGTCACTGGAAAGACTTTCAGAGTCGGTGACACCCTAGAGTTCAAATATGGTCTTTCA 177
||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 163 TGGCTCACTGGAAAGACTTTCAGAGTCGGTGACACTCTAGAGTTCGTATATGGTCTTTCA 222
Query 178 CATTCGGTGTCCGTGGTGGATAAAGCCGACTACGATGGCTGTGAAACTAGCAGA-CCGAC 236
|| ||||||||||||||||||||||| | ||||||| ||| || | |||| || || ||
Sbjct 223 CACTCGGTGTCCGTGGTGGATAAAGCTGGCTACGATAACTGCGACAGTAGCGGAGCC-AC 281
Query 237 GCAGAGCTTTTCAGGCGGAGACACTAAGATAAATCTTACAAGAGTAGGTGCTATACACTT 296
|||| |||| | | |||||||||||||| ||||||| | ||| || | || |||||
Sbjct 282 ACAGAACTTTGCCGATGGAGACACTAAGATCGATCTTACCACAGTTGGAACAATGCACTT 341
Query 297 CCTTTGCCCTAGTCCTGGTCACTGCCTCGGT-GGCATGAAACTCGCCGTTACC-GTACTT 354
||||||||||| | |||||||||| | |||||||||||||||||| || || ||
Sbjct 342 CCTTTGCCCTACTTTTGGTCACTGCAA-GAACGGCATGAAACTCGCCGTT-CCTGTCCTC 399
Query 355 GCCGCCGTTTCATC 368
||||||| | ||||
Sbjct 400 GCCGCCGCTCCATC 413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24664966177
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5